Wall clock time and date at job start Tue Mar 31 2020 00:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48504 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47083 * 299.99910 * 3 2 1 6 6 H 1.48502 * 109.47241 * 60.00151 * 3 2 1 7 7 C 1.40027 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.41324 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.40587 * 119.78278 * 180.27342 * 9 7 2 11 11 C 1.38348 * 119.14834 * 180.25214 * 10 9 7 12 12 C 1.38634 * 118.67775 * 359.47952 * 11 10 9 13 13 C 1.39762 * 119.49294 * 0.25911 * 12 11 10 14 14 N 1.38828 * 119.58433 * 179.97438 * 13 12 11 15 15 C 1.46494 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.53001 * 109.47395 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.53751 * 65.00019 * 16 15 14 18 18 C 1.53173 * 109.54299 * 304.82695 * 16 15 14 19 19 C 1.53105 * 109.15986 * 183.23819 * 18 16 15 20 20 O 1.42905 * 109.48583 * 57.46856 * 19 18 16 21 21 C 1.42890 * 114.10002 * 298.89419 * 20 19 18 22 22 C 1.53093 * 109.41905 * 61.15635 * 21 20 19 23 23 N 1.31977 * 120.83087 * 0.02562 * 13 12 11 24 24 H 0.97005 * 119.99769 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.42884 * 359.97438 * 10 9 7 26 26 H 1.08002 * 120.66517 * 179.76384 * 11 10 9 27 27 H 1.08000 * 120.25521 * 180.23148 * 12 11 10 28 28 H 0.96996 * 119.99781 * 179.97438 * 14 13 12 29 29 H 1.09003 * 109.47582 * 300.00134 * 15 14 13 30 30 H 1.09008 * 109.47482 * 59.99987 * 15 14 13 31 31 H 0.96702 * 114.00566 * 300.00323 * 17 16 15 32 32 H 1.08996 * 109.52508 * 303.05786 * 18 16 15 33 33 H 1.09007 * 109.52605 * 63.24318 * 18 16 15 34 34 H 1.09007 * 109.40443 * 297.49466 * 19 18 16 35 35 H 1.08998 * 109.49777 * 177.51045 * 19 18 16 36 36 H 1.09006 * 109.48386 * 301.17053 * 21 20 19 37 37 H 1.08998 * 109.49172 * 181.14462 * 21 20 19 38 38 H 1.09005 * 109.52531 * 182.48287 * 22 21 20 39 39 H 1.08997 * 109.57332 * 62.32542 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3963 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4366 -0.0005 10 6 2.0083 -3.6514 0.0047 11 6 1.3032 -4.8418 -0.0006 12 6 -0.0823 -4.7944 -0.0001 13 6 -0.7284 -3.5551 0.0004 14 7 -2.1158 -3.5054 0.0005 15 6 -2.8932 -4.7471 -0.0005 16 6 -4.3865 -4.4139 0.0004 17 8 -4.7294 -3.7531 -1.2193 18 6 -4.7066 -3.4990 1.1864 19 6 -6.2145 -3.2369 1.2262 20 8 -6.9124 -4.4808 1.3156 21 6 -6.6881 -5.3564 0.2089 22 6 -5.1996 -5.7056 0.1296 23 7 -0.0362 -2.4314 -0.0002 24 1 -0.4850 0.8401 -0.0004 25 1 3.0883 -3.6555 0.0084 26 1 1.8219 -5.7892 -0.0006 27 1 -0.6580 -5.7082 -0.0004 28 1 -2.5704 -2.6486 0.0012 29 1 -2.6505 -5.3271 -0.8910 30 1 -2.6505 -5.3285 0.8890 31 1 -4.2529 -2.9244 -1.3652 32 1 -4.3976 -3.9824 2.1132 33 1 -4.1743 -2.5547 1.0722 34 1 -6.5156 -2.7157 0.3173 35 1 -6.4542 -2.6224 2.0939 36 1 -6.9954 -4.8631 -0.7132 37 1 -7.2688 -6.2690 0.3438 38 1 -5.0196 -6.3379 -0.7398 39 1 -4.9002 -6.2355 1.0338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116664537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:57 Heat of formation + Delta-G solvation = -82.407999 kcal Electronic energy + Delta-G solvation = -21827.672034 eV Core-core repulsion = 18541.054302 eV Total energy + Delta-G solvation = -3286.617732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13784 -39.99758 -37.99910 -36.14104 -34.99207 -33.25960 -32.26575 -32.14476 -30.79419 -27.84038 -27.25811 -24.72281 -24.02979 -23.26092 -22.11036 -21.12470 -19.28031 -18.53192 -17.62772 -17.12929 -16.93884 -16.59631 -16.29543 -16.18674 -15.88169 -15.59099 -15.37811 -14.75355 -14.63445 -14.33152 -13.95111 -13.71055 -13.50695 -13.26250 -12.91227 -12.84855 -12.74177 -12.59556 -12.32225 -12.22656 -11.91530 -11.73001 -11.43863 -11.31053 -11.06228 -10.69950 -10.42224 -9.85071 -9.47128 -8.34233 -8.24668 -6.48834 1.03939 1.32479 1.42010 1.56479 1.56702 2.24807 2.52451 2.91080 2.93745 3.12665 3.59198 3.64711 3.76581 4.01197 4.04216 4.27422 4.36158 4.45785 4.48055 4.60087 4.62717 4.70708 4.74740 4.76842 4.86833 4.96683 4.99133 5.02504 5.05158 5.09694 5.21903 5.35362 5.69616 5.94627 6.03559 6.21276 6.22679 6.50358 6.57518 6.80728 6.90614 7.18386 8.31758 8.49659 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.004450 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.973147 B = 6290.354475 C = 7251.948325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.471 4.471 8 H 0.085 0.915 9 C 0.259 3.741 10 C -0.343 4.343 11 C -0.030 4.030 12 C -0.369 4.369 13 C 0.395 3.605 14 N -0.729 5.729 15 C 0.120 3.880 16 C 0.132 3.868 17 O -0.562 6.562 18 C -0.177 4.177 19 C 0.068 3.932 20 O -0.399 6.399 21 C 0.064 3.936 22 C -0.137 4.137 23 N -0.562 5.562 24 H 0.276 0.724 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.392 0.608 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.384 0.616 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 -5.867 0.750 13.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.503 4.503 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.366 4.366 11 C -0.054 4.054 12 C -0.394 4.394 13 C 0.154 3.846 14 N -0.366 5.366 15 C -0.005 4.005 16 C 0.091 3.909 17 O -0.369 6.369 18 C -0.215 4.215 19 C -0.009 4.009 20 O -0.318 6.318 21 C -0.012 4.012 22 C -0.175 4.175 23 N -0.284 5.284 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.228 0.772 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.827 -5.733 0.841 14.075 hybrid contribution 1.550 0.732 -0.173 1.723 sum -11.277 -5.001 0.668 12.354 Atomic orbital electron populations 1.70230 1.08687 1.28631 1.29690 1.26909 0.95758 1.04204 0.92504 0.85129 0.79407 0.76235 0.78721 1.18030 1.19133 1.19156 1.19965 0.94596 0.90521 1.45175 0.89675 1.18674 0.87719 0.93143 0.87309 1.21700 0.99002 0.93804 1.22073 1.21004 0.93744 0.97186 0.93515 1.20953 0.95002 0.96124 1.27368 1.18923 0.85882 0.90261 0.89527 1.44154 1.01428 1.07814 1.83205 1.21908 0.90515 0.86710 1.01410 1.21391 0.91461 0.93810 0.84220 1.86458 1.68671 1.41415 1.40387 1.22787 0.98394 1.00997 0.99343 1.22535 0.89731 0.85879 1.02755 1.87882 1.69667 1.28822 1.45444 1.22622 0.94743 0.94560 0.89314 1.22168 0.95991 0.94883 1.04483 1.68176 1.07910 1.25932 1.26400 0.91297 0.88026 0.85408 0.86619 0.77222 0.92355 0.91839 0.76751 0.90371 0.90838 0.92545 0.87846 0.92832 0.86729 0.88964 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.83 11.46 21.84 0.25 -39.58 16 2 C 0.03 1.44 5.50 85.29 0.47 1.91 16 3 Si 0.98 38.27 29.56 68.60 2.03 40.30 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.47 -26.05 9.14 23.46 0.21 -25.83 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.43 16 9 C 0.26 14.71 6.55 40.19 0.26 14.97 16 10 C -0.34 -17.55 9.83 22.87 0.22 -17.33 16 11 C -0.03 -1.37 10.15 22.39 0.23 -1.15 16 12 C -0.37 -16.54 9.34 22.73 0.21 -16.32 16 13 C 0.39 18.94 7.65 133.40 1.02 19.96 16 14 N -0.73 -27.42 5.21 -344.99 -1.80 -29.22 16 15 C 0.12 3.48 4.06 86.38 0.35 3.83 16 16 C 0.13 3.14 0.72 -10.68 -0.01 3.13 16 17 O -0.56 -14.12 11.95 -148.98 -1.78 -15.90 16 18 C -0.18 -4.17 4.84 30.69 0.15 -4.02 16 19 C 0.07 1.45 6.69 72.02 0.48 1.93 16 20 O -0.40 -9.19 10.77 -148.98 -1.60 -10.80 16 21 C 0.06 1.22 6.69 72.01 0.48 1.70 16 22 C -0.14 -2.69 5.15 30.68 0.16 -2.53 16 23 N -0.56 -31.17 7.89 -186.58 -1.47 -32.65 16 24 H 0.28 13.17 8.29 -92.70 -0.77 12.40 16 25 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 26 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 27 H 0.12 4.48 6.68 -2.91 -0.02 4.46 16 28 H 0.39 14.55 6.53 -92.71 -0.61 13.94 16 29 H 0.06 1.76 7.92 -2.39 -0.02 1.74 16 30 H 0.06 1.82 7.92 -2.38 -0.02 1.80 16 31 H 0.38 9.17 8.20 -74.06 -0.61 8.57 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.87 6.71 -2.38 -0.02 1.85 16 34 H 0.06 1.20 7.82 -2.38 -0.02 1.18 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.08 7.82 -2.38 -0.02 1.06 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.00 317.04 -0.27 -65.27 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.14 Total: 42.31 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.24 Total: -19.74 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -3.02 Total: -101.44 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -3.38 Total: -26.70 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -65.00 -0.27 -65.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116664537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.134 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds