Wall clock time and date at job start Tue Mar 31 2020 00:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86804 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47035 * 300.00220 * 3 2 1 6 6 H 1.48501 * 109.47373 * 60.00104 * 3 2 1 7 7 C 1.40022 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00250 * 179.97438 * 7 2 1 9 9 C 1.41318 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.40590 * 119.78627 * 180.02562 * 9 7 2 11 11 C 1.38351 * 119.14549 * 179.97438 * 10 9 7 12 12 C 1.38634 * 118.67954 * 359.74496 * 11 10 9 13 13 C 1.39758 * 119.49403 * 0.47986 * 12 11 10 14 14 N 1.38824 * 119.58226 * 179.79098 * 13 12 11 15 15 C 1.46850 * 111.00074 * 303.67576 * 14 13 12 16 16 C 1.53032 * 109.52379 * 174.16167 * 15 14 13 17 17 C 1.53127 * 109.27890 * 59.17833 * 16 15 14 18 18 H 1.09001 * 109.51686 * 62.31307 * 17 16 15 19 19 C 1.52997 * 109.52427 * 182.43883 * 17 16 15 20 20 O 1.42898 * 109.47319 * 294.87783 * 19 17 16 21 21 C 1.53118 * 109.21297 * 302.38248 * 17 16 15 22 22 H 1.09002 * 109.49743 * 297.67622 * 21 17 16 23 23 O 1.42898 * 109.50193 * 177.56545 * 21 17 16 24 24 C 1.46845 * 110.99935 * 179.46814 * 14 13 12 25 25 N 1.31981 * 120.83036 * 359.50955 * 13 12 11 26 26 H 0.97000 * 120.00003 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.42304 * 0.02562 * 10 9 7 28 28 H 1.08004 * 120.65383 * 180.02562 * 11 10 9 29 29 H 1.08004 * 120.25306 * 180.26945 * 12 11 10 30 30 H 1.09002 * 109.45951 * 54.14782 * 15 14 13 31 31 H 1.08997 * 109.45043 * 294.17510 * 15 14 13 32 32 H 1.09002 * 109.50725 * 299.24362 * 16 15 14 33 33 H 1.08996 * 109.50683 * 179.12018 * 16 15 14 34 34 H 1.09002 * 109.47153 * 174.87476 * 19 17 16 35 35 H 1.09001 * 109.46832 * 54.87667 * 19 17 16 36 36 H 0.96701 * 113.99881 * 180.02562 * 20 19 17 37 37 H 0.96706 * 113.99764 * 179.97438 * 23 21 17 38 38 H 1.09002 * 109.46118 * 305.85563 * 24 14 13 39 39 H 1.09001 * 109.46628 * 65.83003 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7015 1.3465 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8828 2.3965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0086 -3.6514 -0.0005 11 6 1.3035 -4.8417 0.0000 12 6 -0.0820 -4.7944 0.0059 13 6 -0.7281 -3.5551 0.0010 14 7 -2.1155 -3.5055 0.0025 15 6 -2.6700 -4.2517 -1.1342 16 6 -4.1954 -4.2985 -1.0201 17 6 -4.7454 -2.8695 -1.0064 18 1 -4.4994 -2.3756 -1.9465 19 6 -6.2648 -2.9080 -0.8314 20 8 -6.8603 -3.5281 -1.9729 21 6 -4.1156 -2.0983 0.1568 22 1 -4.3948 -2.5694 1.0992 23 8 -4.5815 -0.7475 0.1414 24 6 -2.5924 -2.1167 0.0094 25 7 -0.0359 -2.4314 0.0005 26 1 -0.4850 0.8400 0.0004 27 1 3.0886 -3.6553 -0.0001 28 1 1.8223 -5.7890 0.0004 29 1 -0.6577 -5.7082 0.0109 30 1 -2.2742 -5.2673 -1.1297 31 1 -2.3903 -3.7570 -2.0643 32 1 -4.4759 -4.8051 -0.0967 33 1 -4.6077 -4.8389 -1.8721 34 1 -6.6449 -1.8914 -0.7305 35 1 -6.5131 -3.4792 0.0632 36 1 -7.8246 -3.5865 -1.9305 37 1 -4.2225 -0.1995 0.8528 38 1 -2.1403 -1.5816 0.8445 39 1 -2.3133 -1.6322 -0.9262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117687475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:44 Heat of formation + Delta-G solvation = -60.174300 kcal Electronic energy + Delta-G solvation = -22291.136006 eV Core-core repulsion = 19005.482400 eV Total energy + Delta-G solvation = -3285.653606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.64630 -38.02632 -36.48937 -35.70142 -33.65275 -32.75256 -30.55690 -29.31092 -29.19023 -26.56956 -25.23051 -22.79330 -22.33243 -21.09135 -20.35118 -19.44468 -17.64108 -17.32386 -16.81716 -16.04310 -15.04355 -14.87135 -14.81974 -14.56165 -14.32047 -13.71968 -13.67060 -13.45276 -12.91316 -12.64984 -12.26559 -12.11518 -11.88776 -11.73561 -11.51650 -11.22009 -11.06208 -10.78093 -10.64655 -10.60766 -10.43016 -10.08667 -9.90892 -9.84579 -9.59325 -9.42048 -8.71617 -8.05018 -7.63421 -6.98433 -6.44818 -4.54843 2.70454 2.98978 3.07318 3.11173 3.18911 3.92079 4.17824 4.30783 4.58376 4.76525 4.94910 5.22766 5.28796 5.47232 5.54566 5.63873 5.69825 5.76015 5.89237 6.04788 6.07164 6.15961 6.18176 6.28435 6.42151 6.55591 6.59429 6.64022 6.77954 6.88460 7.07067 7.12344 7.43175 7.61743 7.65727 7.76616 7.78816 7.93642 8.16361 8.34324 8.67573 8.96176 10.05341 10.27406 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.005890 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.453498 B = 4752.993657 C = 6066.032061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.432 4.432 8 H 0.083 0.917 9 C 0.275 3.725 10 C -0.295 4.295 11 C -0.045 4.045 12 C -0.320 4.320 13 C 0.321 3.679 14 N -0.477 5.477 15 C 0.062 3.938 16 C -0.103 4.103 17 C -0.080 4.080 18 H 0.080 0.920 19 C 0.085 3.915 20 O -0.575 6.575 21 C 0.109 3.891 22 H 0.057 0.943 23 O -0.569 6.569 24 C 0.053 3.947 25 N -0.508 5.508 26 H 0.270 0.730 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.374 0.626 37 H 0.380 0.620 38 H 0.097 0.903 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 -2.631 -0.005 10.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.153 4.153 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.101 0.899 9 C 0.148 3.852 10 C -0.317 4.317 11 C -0.069 4.069 12 C -0.345 4.345 13 C 0.083 3.917 14 N -0.198 5.198 15 C -0.065 4.065 16 C -0.141 4.141 17 C -0.098 4.098 18 H 0.099 0.901 19 C 0.007 3.993 20 O -0.379 6.379 21 C 0.050 3.950 22 H 0.075 0.925 23 O -0.374 6.374 24 C -0.075 4.075 25 N -0.226 5.226 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.220 0.780 37 H 0.228 0.772 38 H 0.115 0.885 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.463 -2.146 -0.289 10.685 hybrid contribution 0.909 0.478 0.128 1.035 sum -9.555 -1.668 -0.161 9.700 Atomic orbital electron populations 1.70113 1.07115 1.27396 1.29164 1.26027 0.94919 1.00935 0.93429 0.86302 0.80896 0.81284 0.78505 1.18480 1.19914 1.19870 1.19623 0.94251 0.89346 1.43097 0.89851 1.18339 0.87388 0.91984 0.87469 1.21647 0.98612 0.93484 1.18001 1.20703 0.93580 0.96590 0.96072 1.20686 0.94285 0.95867 1.23686 1.19785 0.88004 0.90564 0.93351 1.59072 1.05971 1.14385 1.40328 1.22148 0.94157 0.98930 0.91308 1.21571 0.94498 0.95353 1.02702 1.21174 0.92907 0.96352 0.99404 0.90138 1.22194 0.93514 0.96383 0.87204 1.86480 1.24566 1.83160 1.43739 1.21843 0.93976 0.82048 0.97159 0.92537 1.86419 1.71879 1.22394 1.56681 1.22429 0.91685 0.88633 1.04710 1.68649 1.07900 1.24785 1.21232 0.91868 0.88478 0.88572 0.88645 0.90099 0.94476 0.91270 0.90366 0.92881 0.93976 0.77959 0.77215 0.88457 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.08 11.46 55.55 0.64 -17.44 16 2 C 0.07 1.78 5.50 -17.35 -0.10 1.69 16 3 Si 0.91 18.33 29.56 -169.99 -5.02 13.30 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.43 -11.39 9.14 -37.74 -0.34 -11.74 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.27 7.45 6.55 -85.00 -0.56 6.90 16 10 C -0.29 -7.29 9.83 -38.65 -0.38 -7.67 16 11 C -0.04 -1.02 10.15 -39.39 -0.40 -1.42 16 12 C -0.32 -7.33 9.20 -38.87 -0.36 -7.69 16 13 C 0.32 7.76 6.40 -155.31 -0.99 6.77 16 14 N -0.48 -9.84 4.67 -173.21 -0.81 -10.65 16 15 C 0.06 1.09 5.25 -3.83 -0.02 1.07 16 16 C -0.10 -1.53 5.25 -26.65 -0.14 -1.67 16 17 C -0.08 -1.22 2.22 -90.49 -0.20 -1.42 16 18 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 19 C 0.08 1.08 6.37 37.16 0.24 1.31 16 20 O -0.57 -6.99 13.25 -35.23 -0.47 -7.46 16 21 C 0.11 1.75 3.04 -26.65 -0.08 1.67 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 O -0.57 -8.69 12.68 -35.23 -0.45 -9.14 16 24 C 0.05 1.07 4.27 -3.84 -0.02 1.05 16 25 N -0.51 -13.54 6.16 -10.33 -0.06 -13.61 16 26 H 0.27 6.20 8.29 -40.82 -0.34 5.87 16 27 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 28 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.10 1.97 7.16 -52.48 -0.38 1.59 16 30 H 0.08 1.38 6.68 -51.93 -0.35 1.03 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 34 H 0.05 0.68 7.62 -51.93 -0.40 0.29 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.37 2.68 9.12 45.56 0.42 3.09 16 37 H 0.38 4.64 9.09 45.56 0.41 5.05 16 38 H 0.10 2.17 7.70 -51.93 -0.40 1.77 16 39 H 0.06 1.30 8.11 -51.93 -0.42 0.88 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -30.10 318.61 -8.75 -38.85 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.03 Total: 12.49 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.35 Total: -11.14 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.24 Total: -41.70 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.91 Total: -16.60 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.10 -8.75 -38.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117687475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.329 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds