Wall clock time and date at job start Tue Mar 31 2020 00:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86804 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47035 * 300.00220 * 3 2 1 6 6 H 1.48501 * 109.47373 * 60.00104 * 3 2 1 7 7 C 1.40022 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00250 * 179.97438 * 7 2 1 9 9 C 1.41318 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.40590 * 119.78627 * 180.02562 * 9 7 2 11 11 C 1.38351 * 119.14549 * 179.97438 * 10 9 7 12 12 C 1.38634 * 118.67954 * 359.74496 * 11 10 9 13 13 C 1.39758 * 119.49403 * 0.47986 * 12 11 10 14 14 N 1.38824 * 119.58226 * 179.79098 * 13 12 11 15 15 C 1.46850 * 111.00074 * 303.67576 * 14 13 12 16 16 C 1.53032 * 109.52379 * 174.16167 * 15 14 13 17 17 C 1.53127 * 109.27890 * 59.17833 * 16 15 14 18 18 H 1.09001 * 109.51686 * 62.31307 * 17 16 15 19 19 C 1.52997 * 109.52427 * 182.43883 * 17 16 15 20 20 O 1.42898 * 109.47319 * 294.87783 * 19 17 16 21 21 C 1.53118 * 109.21297 * 302.38248 * 17 16 15 22 22 H 1.09002 * 109.49743 * 297.67622 * 21 17 16 23 23 O 1.42898 * 109.50193 * 177.56545 * 21 17 16 24 24 C 1.46845 * 110.99935 * 179.46814 * 14 13 12 25 25 N 1.31981 * 120.83036 * 359.50955 * 13 12 11 26 26 H 0.97000 * 120.00003 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.42304 * 0.02562 * 10 9 7 28 28 H 1.08004 * 120.65383 * 180.02562 * 11 10 9 29 29 H 1.08004 * 120.25306 * 180.26945 * 12 11 10 30 30 H 1.09002 * 109.45951 * 54.14782 * 15 14 13 31 31 H 1.08997 * 109.45043 * 294.17510 * 15 14 13 32 32 H 1.09002 * 109.50725 * 299.24362 * 16 15 14 33 33 H 1.08996 * 109.50683 * 179.12018 * 16 15 14 34 34 H 1.09002 * 109.47153 * 174.87476 * 19 17 16 35 35 H 1.09001 * 109.46832 * 54.87667 * 19 17 16 36 36 H 0.96701 * 113.99881 * 180.02562 * 20 19 17 37 37 H 0.96706 * 113.99764 * 179.97438 * 23 21 17 38 38 H 1.09002 * 109.46118 * 305.85563 * 24 14 13 39 39 H 1.09001 * 109.46628 * 65.83003 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7015 1.3465 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8828 2.3965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0086 -3.6514 -0.0005 11 6 1.3035 -4.8417 0.0000 12 6 -0.0820 -4.7944 0.0059 13 6 -0.7281 -3.5551 0.0010 14 7 -2.1155 -3.5055 0.0025 15 6 -2.6700 -4.2517 -1.1342 16 6 -4.1954 -4.2985 -1.0201 17 6 -4.7454 -2.8695 -1.0064 18 1 -4.4994 -2.3756 -1.9465 19 6 -6.2648 -2.9080 -0.8314 20 8 -6.8603 -3.5281 -1.9729 21 6 -4.1156 -2.0983 0.1568 22 1 -4.3948 -2.5694 1.0992 23 8 -4.5815 -0.7475 0.1414 24 6 -2.5924 -2.1167 0.0094 25 7 -0.0359 -2.4314 0.0005 26 1 -0.4850 0.8400 0.0004 27 1 3.0886 -3.6553 -0.0001 28 1 1.8223 -5.7890 0.0004 29 1 -0.6577 -5.7082 0.0109 30 1 -2.2742 -5.2673 -1.1297 31 1 -2.3903 -3.7570 -2.0643 32 1 -4.4759 -4.8051 -0.0967 33 1 -4.6077 -4.8389 -1.8721 34 1 -6.6449 -1.8914 -0.7305 35 1 -6.5131 -3.4792 0.0632 36 1 -7.8246 -3.5865 -1.9305 37 1 -4.2225 -0.1995 0.8528 38 1 -2.1403 -1.5816 0.8445 39 1 -2.3133 -1.6322 -0.9262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117687475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:43 Heat of formation + Delta-G solvation = -83.372426 kcal Electronic energy + Delta-G solvation = -22292.141952 eV Core-core repulsion = 19005.482400 eV Total energy + Delta-G solvation = -3286.659552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.20439 -39.60816 -37.59155 -37.12926 -35.43108 -34.18278 -32.38720 -30.95600 -30.75085 -28.11605 -26.90723 -24.28488 -23.76919 -22.84162 -21.98101 -20.83038 -19.43935 -18.42303 -18.12947 -17.67560 -16.64717 -16.54355 -16.29601 -16.04852 -15.67649 -15.28599 -15.10408 -14.94055 -14.55365 -13.94692 -13.87296 -13.77627 -13.26225 -13.20639 -12.85986 -12.85205 -12.78175 -12.62719 -12.35238 -11.94040 -11.80380 -11.67893 -11.34422 -11.27615 -10.94400 -10.77975 -10.48378 -9.93567 -9.52651 -8.81437 -8.30011 -6.51227 0.86820 1.17226 1.39606 1.51011 1.53630 2.21512 2.71156 2.88952 3.22918 3.34049 3.71583 3.88328 3.99146 4.08691 4.14135 4.32280 4.35647 4.39515 4.50818 4.53690 4.62873 4.80848 4.82570 4.84451 4.91386 4.92891 5.02452 5.06222 5.14401 5.26095 5.29255 5.37956 5.64325 5.87372 5.94214 5.99259 6.28746 6.46684 6.76924 6.78949 6.95998 7.04121 8.15824 8.43471 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.005890 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.453498 B = 4752.993657 C = 6066.032061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.028 3.972 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.239 3.761 10 C -0.318 4.318 11 C -0.042 4.042 12 C -0.321 4.321 13 C 0.300 3.700 14 N -0.472 5.472 15 C 0.061 3.939 16 C -0.091 4.091 17 C -0.082 4.082 18 H 0.053 0.947 19 C 0.095 3.905 20 O -0.589 6.589 21 C 0.122 3.878 22 H 0.074 0.926 23 O -0.573 6.573 24 C 0.069 3.931 25 N -0.533 5.533 26 H 0.276 0.724 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.014 0.986 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.393 0.607 38 H 0.068 0.932 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.304 -3.419 0.358 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.113 3.887 10 C -0.341 4.341 11 C -0.066 4.066 12 C -0.346 4.346 13 C 0.062 3.938 14 N -0.192 5.192 15 C -0.065 4.065 16 C -0.128 4.128 17 C -0.101 4.101 18 H 0.072 0.928 19 C 0.017 3.983 20 O -0.398 6.398 21 C 0.063 3.937 22 H 0.092 0.908 23 O -0.380 6.380 24 C -0.059 4.059 25 N -0.252 5.252 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.152 0.848 29 H 0.141 0.859 30 H 0.110 0.890 31 H 0.032 0.968 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.247 0.753 37 H 0.242 0.758 38 H 0.086 0.914 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -11.844 -2.956 0.077 12.207 hybrid contribution 1.279 0.635 -0.007 1.428 sum -10.565 -2.320 0.070 10.817 Atomic orbital electron populations 1.70211 1.08492 1.28632 1.29181 1.26884 0.95812 1.04109 0.92640 0.85137 0.79401 0.76346 0.78675 1.18067 1.19479 1.18976 1.19946 0.94617 0.90428 1.44867 0.89639 1.18834 0.88154 0.93361 0.88364 1.21833 0.99273 0.93751 1.19258 1.21114 0.93714 0.97459 0.94296 1.21046 0.94792 0.96343 1.22429 1.20340 0.89609 0.90781 0.93028 1.59185 1.04253 1.14622 1.41178 1.22269 0.96474 0.98552 0.89201 1.21517 0.91714 0.95370 1.04214 1.21162 0.95297 0.96099 0.97519 0.92837 1.21998 0.91230 0.96894 0.88172 1.86417 1.26829 1.82953 1.43576 1.21700 0.90776 0.82826 0.98430 0.90779 1.86401 1.71630 1.22329 1.57632 1.22223 0.94591 0.87885 1.01244 1.68633 1.08061 1.26310 1.22199 0.91292 0.87581 0.84771 0.85946 0.88970 0.96785 0.89510 0.88847 0.93064 0.91777 0.75276 0.75756 0.91368 0.96561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.04 11.46 21.84 0.25 -38.79 16 2 C 0.03 1.42 5.50 85.29 0.47 1.89 16 3 Si 0.98 38.32 29.56 68.60 2.03 40.35 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.47 -25.60 9.14 23.46 0.21 -25.39 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 9 C 0.24 13.48 6.55 40.19 0.26 13.74 16 10 C -0.32 -16.01 9.83 22.87 0.22 -15.79 16 11 C -0.04 -1.85 10.15 22.39 0.23 -1.62 16 12 C -0.32 -14.43 9.20 22.73 0.21 -14.22 16 13 C 0.30 14.77 6.40 133.40 0.85 15.62 16 14 N -0.47 -19.58 4.67 -701.91 -3.28 -22.86 16 15 C 0.06 2.14 5.25 86.32 0.45 2.59 16 16 C -0.09 -2.48 5.25 30.65 0.16 -2.32 16 17 C -0.08 -2.39 2.22 -10.71 -0.02 -2.41 16 18 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 19 C 0.09 2.14 6.37 71.98 0.46 2.60 16 20 O -0.59 -12.60 13.25 -148.98 -1.97 -14.57 16 21 C 0.12 3.85 3.04 30.65 0.09 3.94 16 22 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 23 O -0.57 -17.20 12.68 -148.98 -1.89 -19.09 16 24 C 0.07 2.85 4.27 86.33 0.37 3.21 16 25 N -0.53 -29.59 6.16 -186.59 -1.15 -30.74 16 26 H 0.28 13.15 8.29 -92.71 -0.77 12.39 16 27 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 28 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.12 4.74 7.16 -2.91 -0.02 4.72 16 30 H 0.09 2.98 6.68 -2.39 -0.02 2.96 16 31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.33 7.90 -2.39 -0.02 2.31 16 34 H 0.05 1.19 7.62 -2.39 -0.02 1.17 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.40 4.37 9.12 -74.06 -0.68 3.69 16 37 H 0.39 9.46 9.09 -74.05 -0.67 8.78 16 38 H 0.07 3.19 7.70 -2.39 -0.02 3.17 16 39 H 0.02 0.79 8.11 -2.39 -0.02 0.77 16 Total: -1.00 -67.41 318.61 -2.32 -69.73 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.27 Total: 34.11 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 3.97 Total: -18.14 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -4.18 Total: -92.39 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -3.86 Total: -33.66 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -67.41 -2.32 -69.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117687475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.645 kcal (2) G-P(sol) polarization free energy of solvation -67.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds