Wall clock time and date at job start Tue Mar 31 2020 00:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86799 * 119.99773 * 2 1 4 4 H 1.48506 * 109.46956 * 269.99741 * 3 2 1 5 5 H 1.48501 * 109.47076 * 29.99854 * 3 2 1 6 6 H 1.48499 * 109.47221 * 149.99801 * 3 2 1 7 7 C 1.40027 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.41311 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.40587 * 119.78570 * 179.97438 * 9 7 2 11 11 C 1.38344 * 119.14979 * 180.02562 * 10 9 7 12 12 C 1.38641 * 118.68305 * 359.74880 * 11 10 9 13 13 C 1.39759 * 119.48693 * 0.49548 * 12 11 10 14 14 N 1.38822 * 119.58420 * 179.76886 * 13 12 11 15 15 C 1.46850 * 111.00121 * 55.77450 * 14 13 12 16 16 C 1.53036 * 109.52384 * 174.16173 * 15 14 13 17 17 C 1.53120 * 109.27700 * 59.18090 * 16 15 14 18 18 H 1.08998 * 109.52402 * 62.31384 * 17 16 15 19 19 C 1.53002 * 109.51787 * 182.44145 * 17 16 15 20 20 O 1.42905 * 109.47197 * 294.99341 * 19 17 16 21 21 C 1.53120 * 109.15972 * 302.34018 * 17 16 15 22 22 H 1.09000 * 109.49976 * 177.59581 * 21 17 16 23 23 O 1.42900 * 109.50330 * 297.71850 * 21 17 16 24 24 C 1.46850 * 111.00209 * 291.56344 * 14 13 12 25 25 N 1.31981 * 120.82971 * 359.49431 * 13 12 11 26 26 H 0.96995 * 119.99814 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.42447 * 0.04487 * 10 9 7 28 28 H 1.08000 * 120.65823 * 180.02562 * 11 10 9 29 29 H 1.07997 * 120.25909 * 180.26952 * 12 11 10 30 30 H 1.08995 * 109.45831 * 54.13962 * 15 14 13 31 31 H 1.08998 * 109.45719 * 294.17812 * 15 14 13 32 32 H 1.08998 * 109.49982 * 179.12006 * 16 15 14 33 33 H 1.08997 * 109.50239 * 299.19542 * 16 15 14 34 34 H 1.08995 * 109.47518 * 54.99743 * 19 17 16 35 35 H 1.08998 * 109.46938 * 174.99947 * 19 17 16 36 36 H 0.96700 * 114.00022 * 179.97438 * 20 19 17 37 37 H 0.96708 * 113.99450 * 179.97438 * 23 21 17 38 38 H 1.09007 * 109.46080 * 65.82294 * 24 14 13 39 39 H 1.09001 * 109.45527 * 305.85191 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4403 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3036 -4.8417 0.0000 12 6 -0.0820 -4.7945 0.0048 13 6 -0.7281 -3.5552 -0.0005 14 7 -2.1154 -3.5056 -0.0005 15 6 -2.6688 -4.2525 1.1363 16 6 -4.1856 -4.0559 1.1877 17 6 -4.8043 -4.5515 -0.1223 18 1 -4.6131 -5.6187 -0.2347 19 6 -6.3136 -4.3018 -0.1015 20 8 -6.9138 -5.0962 0.9235 21 6 -4.1760 -3.7916 -1.2939 22 1 -4.5815 -4.1700 -2.2322 23 8 -4.4716 -2.3988 -1.1725 24 6 -2.6595 -3.9958 -1.2734 25 7 -0.0359 -2.4315 0.0000 26 1 -0.4849 0.8400 0.0004 27 1 3.0886 -3.6553 0.0013 28 1 1.8224 -5.7890 0.0004 29 1 -0.6576 -5.7082 0.0089 30 1 -2.2236 -3.8875 2.0618 31 1 -2.4437 -5.3125 1.0185 32 1 -4.5979 -4.6230 2.0223 33 1 -4.4112 -2.9978 1.3200 34 1 -6.5048 -3.2473 0.0973 35 1 -6.7400 -4.5725 -1.0674 36 1 -7.8721 -4.9880 0.9946 37 1 -4.1033 -1.8553 -1.8826 38 1 -2.4345 -5.0571 -1.3798 39 1 -2.2076 -3.4443 -2.0978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117687476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:46 Heat of formation + Delta-G solvation = -52.983164 kcal Electronic energy + Delta-G solvation = -22185.785078 eV Core-core repulsion = 18900.443303 eV Total energy + Delta-G solvation = -3285.341775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.69880 -38.02201 -36.54822 -35.37617 -33.56606 -32.62520 -30.47060 -29.66373 -29.23298 -26.46078 -25.22504 -22.73857 -22.38256 -21.39334 -20.41958 -19.37851 -17.61329 -17.28295 -16.54943 -16.12808 -15.07156 -14.88763 -14.64056 -14.44176 -14.30723 -14.03779 -13.85292 -13.34153 -12.99685 -12.66378 -12.42611 -12.07874 -11.89087 -11.79165 -11.35396 -11.13088 -11.04683 -10.79419 -10.66593 -10.54771 -10.42527 -10.19222 -9.98909 -9.82454 -9.51486 -9.32780 -8.21122 -8.11875 -7.53082 -7.17788 -6.31009 -4.51579 2.66505 3.00577 3.10534 3.13264 3.19642 3.96164 4.17284 4.29469 4.62569 4.71883 4.93843 5.04964 5.23003 5.39588 5.48382 5.56951 5.72943 5.75191 5.86192 5.95121 6.05263 6.09965 6.12011 6.18095 6.31139 6.35674 6.47259 6.72343 6.73248 6.85426 6.90913 7.22835 7.53496 7.59859 7.67228 7.70071 7.76506 8.03189 8.20887 8.32645 8.72009 8.95377 10.15480 10.34113 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022024 B = 0.005084 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.037956 B = 5506.409236 C = 6325.218512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.067 3.933 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.429 4.429 8 H 0.084 0.916 9 C 0.261 3.739 10 C -0.285 4.285 11 C -0.050 4.050 12 C -0.348 4.348 13 C 0.320 3.680 14 N -0.474 5.474 15 C 0.071 3.929 16 C -0.100 4.100 17 C -0.079 4.079 18 H 0.081 0.919 19 C 0.086 3.914 20 O -0.575 6.575 21 C 0.119 3.881 22 H 0.053 0.947 23 O -0.549 6.549 24 C 0.043 3.957 25 N -0.456 5.456 26 H 0.274 0.726 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.375 0.625 37 H 0.379 0.621 38 H 0.037 0.963 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.238 -5.115 -2.303 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.160 4.160 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.460 4.460 8 H 0.102 0.898 9 C 0.136 3.864 10 C -0.308 4.308 11 C -0.074 4.074 12 C -0.374 4.374 13 C 0.081 3.919 14 N -0.196 5.196 15 C -0.056 4.056 16 C -0.138 4.138 17 C -0.097 4.097 18 H 0.099 0.901 19 C 0.008 3.992 20 O -0.380 6.380 21 C 0.059 3.941 22 H 0.071 0.929 23 O -0.354 6.354 24 C -0.086 4.086 25 N -0.169 5.169 26 H 0.085 0.915 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.221 0.779 37 H 0.226 0.774 38 H 0.055 0.945 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.650 -4.018 -1.623 11.497 hybrid contribution 0.931 -0.713 -0.757 1.396 sum -9.718 -4.731 -2.380 11.068 Atomic orbital electron populations 1.70177 1.06878 1.27802 1.27116 1.26094 0.94953 1.00960 0.93980 0.86372 0.80486 0.81068 0.79174 1.19459 1.20086 1.18606 1.19611 0.94234 0.89347 1.42767 0.89772 1.18477 0.87479 0.91995 0.88484 1.21724 0.98668 0.93559 1.16861 1.20697 0.93668 0.96526 0.96523 1.21576 0.95246 0.97355 1.23232 1.19551 0.88131 0.88995 0.95208 1.58282 1.04533 1.55372 1.01380 1.21998 0.94488 0.95047 0.94106 1.21498 0.93935 1.02584 0.95792 1.21191 0.93119 0.99337 0.96092 0.90106 1.22149 0.93069 0.94629 0.89331 1.86472 1.25400 1.68693 1.57480 1.21711 0.93148 0.83039 0.96184 0.92915 1.86461 1.77954 1.17186 1.53838 1.22646 0.94750 0.98300 0.92857 1.68421 1.06754 1.25574 1.16130 0.91501 0.88388 0.88905 0.89374 0.90904 0.95294 0.91431 0.90302 0.92476 0.94298 0.77885 0.77414 0.94488 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.79 11.46 55.55 0.64 -18.16 16 2 C 0.07 1.70 5.50 -17.34 -0.10 1.61 16 3 Si 0.90 18.63 29.56 -169.99 -5.02 13.60 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.43 -11.53 9.14 -37.74 -0.34 -11.87 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.26 7.23 6.55 -85.00 -0.56 6.67 16 10 C -0.29 -7.13 9.83 -38.66 -0.38 -7.51 16 11 C -0.05 -1.14 10.15 -39.39 -0.40 -1.54 16 12 C -0.35 -8.04 8.75 -38.86 -0.34 -8.38 16 13 C 0.32 7.88 5.67 -155.32 -0.88 7.00 16 14 N -0.47 -10.03 4.58 -173.20 -0.79 -10.82 16 15 C 0.07 1.34 5.04 -3.83 -0.02 1.32 16 16 C -0.10 -1.61 5.09 -26.65 -0.14 -1.75 16 17 C -0.08 -1.11 2.33 -90.50 -0.21 -1.32 16 18 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.09 1.03 6.19 37.16 0.23 1.26 16 20 O -0.58 -6.71 13.25 -35.23 -0.47 -7.18 16 21 C 0.12 1.70 3.27 -26.65 -0.09 1.62 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 O -0.55 -8.42 11.98 -35.23 -0.42 -8.84 16 24 C 0.04 0.75 4.87 -3.83 -0.02 0.73 16 25 N -0.46 -12.71 7.89 -10.33 -0.08 -12.79 16 26 H 0.27 6.71 8.29 -40.82 -0.34 6.37 16 27 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 28 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 29 H 0.09 1.86 7.08 -52.49 -0.37 1.49 16 30 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 31 H 0.03 0.52 7.09 -51.93 -0.37 0.15 16 32 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 33 H 0.08 1.41 7.80 -51.93 -0.41 1.00 16 34 H 0.06 0.73 7.78 -51.93 -0.40 0.32 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.55 9.12 45.56 0.42 2.97 16 37 H 0.38 4.90 9.08 45.56 0.41 5.32 16 38 H 0.04 0.63 7.76 -51.92 -0.40 0.23 16 39 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -31.72 318.89 -8.62 -40.34 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.03 Total: 11.20 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -3.24 Total: -12.16 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.24 Total: -41.76 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.89 Total: -16.02 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.72 -8.62 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117687476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.646 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds