Wall clock time and date at job start Tue Mar 31 2020 00:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86799 * 119.99773 * 2 1 4 4 H 1.48506 * 109.46956 * 269.99741 * 3 2 1 5 5 H 1.48501 * 109.47076 * 29.99854 * 3 2 1 6 6 H 1.48499 * 109.47221 * 149.99801 * 3 2 1 7 7 C 1.40027 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.41311 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.40587 * 119.78570 * 179.97438 * 9 7 2 11 11 C 1.38344 * 119.14979 * 180.02562 * 10 9 7 12 12 C 1.38641 * 118.68305 * 359.74880 * 11 10 9 13 13 C 1.39759 * 119.48693 * 0.49548 * 12 11 10 14 14 N 1.38822 * 119.58420 * 179.76886 * 13 12 11 15 15 C 1.46850 * 111.00121 * 55.77450 * 14 13 12 16 16 C 1.53036 * 109.52384 * 174.16173 * 15 14 13 17 17 C 1.53120 * 109.27700 * 59.18090 * 16 15 14 18 18 H 1.08998 * 109.52402 * 62.31384 * 17 16 15 19 19 C 1.53002 * 109.51787 * 182.44145 * 17 16 15 20 20 O 1.42905 * 109.47197 * 294.99341 * 19 17 16 21 21 C 1.53120 * 109.15972 * 302.34018 * 17 16 15 22 22 H 1.09000 * 109.49976 * 177.59581 * 21 17 16 23 23 O 1.42900 * 109.50330 * 297.71850 * 21 17 16 24 24 C 1.46850 * 111.00209 * 291.56344 * 14 13 12 25 25 N 1.31981 * 120.82971 * 359.49431 * 13 12 11 26 26 H 0.96995 * 119.99814 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.42447 * 0.04487 * 10 9 7 28 28 H 1.08000 * 120.65823 * 180.02562 * 11 10 9 29 29 H 1.07997 * 120.25909 * 180.26952 * 12 11 10 30 30 H 1.08995 * 109.45831 * 54.13962 * 15 14 13 31 31 H 1.08998 * 109.45719 * 294.17812 * 15 14 13 32 32 H 1.08998 * 109.49982 * 179.12006 * 16 15 14 33 33 H 1.08997 * 109.50239 * 299.19542 * 16 15 14 34 34 H 1.08995 * 109.47518 * 54.99743 * 19 17 16 35 35 H 1.08998 * 109.46938 * 174.99947 * 19 17 16 36 36 H 0.96700 * 114.00022 * 179.97438 * 20 19 17 37 37 H 0.96708 * 113.99450 * 179.97438 * 23 21 17 38 38 H 1.09007 * 109.46080 * 65.82294 * 24 14 13 39 39 H 1.09001 * 109.45527 * 305.85191 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4403 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3036 -4.8417 0.0000 12 6 -0.0820 -4.7945 0.0048 13 6 -0.7281 -3.5552 -0.0005 14 7 -2.1154 -3.5056 -0.0005 15 6 -2.6688 -4.2525 1.1363 16 6 -4.1856 -4.0559 1.1877 17 6 -4.8043 -4.5515 -0.1223 18 1 -4.6131 -5.6187 -0.2347 19 6 -6.3136 -4.3018 -0.1015 20 8 -6.9138 -5.0962 0.9235 21 6 -4.1760 -3.7916 -1.2939 22 1 -4.5815 -4.1700 -2.2322 23 8 -4.4716 -2.3988 -1.1725 24 6 -2.6595 -3.9958 -1.2734 25 7 -0.0359 -2.4315 0.0000 26 1 -0.4849 0.8400 0.0004 27 1 3.0886 -3.6553 0.0013 28 1 1.8224 -5.7890 0.0004 29 1 -0.6576 -5.7082 0.0089 30 1 -2.2236 -3.8875 2.0618 31 1 -2.4437 -5.3125 1.0185 32 1 -4.5979 -4.6230 2.0223 33 1 -4.4112 -2.9978 1.3200 34 1 -6.5048 -3.2473 0.0973 35 1 -6.7400 -4.5725 -1.0674 36 1 -7.8721 -4.9880 0.9946 37 1 -4.1033 -1.8553 -1.8826 38 1 -2.4345 -5.0571 -1.3798 39 1 -2.2076 -3.4443 -2.0978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117687476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:45 Heat of formation + Delta-G solvation = -78.070176 kcal Electronic energy + Delta-G solvation = -22186.872933 eV Core-core repulsion = 18900.443303 eV Total energy + Delta-G solvation = -3286.429629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19099 -39.63021 -37.60098 -36.78358 -35.35555 -34.00809 -32.37613 -31.02853 -30.96639 -27.93295 -26.98125 -24.08738 -23.74864 -23.27587 -22.04814 -20.65791 -19.41822 -18.24784 -18.01303 -17.61752 -16.65743 -16.42059 -16.31590 -16.07979 -15.49169 -15.39747 -15.21710 -14.83348 -14.54784 -14.09896 -13.90242 -13.67820 -13.50667 -13.08951 -12.81884 -12.79742 -12.67909 -12.59979 -12.34935 -11.96450 -11.80380 -11.60057 -11.36942 -11.19778 -10.77785 -10.72367 -10.11102 -9.91553 -9.45542 -8.93713 -8.19681 -6.52457 0.78644 1.14945 1.41004 1.52216 1.55681 2.23342 2.79361 2.82335 3.27125 3.45131 3.74720 3.81631 3.88866 4.15588 4.23952 4.31535 4.34605 4.38351 4.48526 4.54687 4.59919 4.68856 4.76194 4.84399 4.85677 4.88549 4.96787 5.04165 5.05748 5.16890 5.35221 5.45356 5.62983 5.80629 5.92573 6.20508 6.24785 6.47581 6.80185 6.94334 6.96868 7.01549 8.24087 8.46293 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022024 B = 0.005084 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.037956 B = 5506.409236 C = 6325.218512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.023 3.977 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.465 4.465 8 H 0.091 0.909 9 C 0.228 3.772 10 C -0.305 4.305 11 C -0.048 4.048 12 C -0.345 4.345 13 C 0.308 3.692 14 N -0.493 5.493 15 C 0.074 3.926 16 C -0.089 4.089 17 C -0.079 4.079 18 H 0.091 0.909 19 C 0.094 3.906 20 O -0.591 6.591 21 C 0.126 3.874 22 H 0.090 0.910 23 O -0.564 6.564 24 C 0.043 3.957 25 N -0.495 5.495 26 H 0.278 0.722 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.386 0.614 38 H 0.046 0.954 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.141 -6.017 -2.914 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.200 4.200 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.496 4.496 8 H 0.109 0.891 9 C 0.103 3.897 10 C -0.327 4.327 11 C -0.072 4.072 12 C -0.371 4.371 13 C 0.070 3.930 14 N -0.216 5.216 15 C -0.053 4.053 16 C -0.127 4.127 17 C -0.098 4.098 18 H 0.109 0.891 19 C 0.016 3.984 20 O -0.399 6.399 21 C 0.066 3.934 22 H 0.108 0.892 23 O -0.371 6.371 24 C -0.085 4.085 25 N -0.209 5.209 26 H 0.089 0.911 27 H 0.128 0.872 28 H 0.148 0.852 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.235 0.765 38 H 0.065 0.935 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.582 -4.951 -2.239 12.793 hybrid contribution 1.157 -0.572 -0.546 1.401 sum -10.425 -5.523 -2.785 12.122 Atomic orbital electron populations 1.70299 1.08687 1.28996 1.28233 1.27011 0.95732 1.04465 0.92782 0.85158 0.78963 0.75786 0.79485 1.18578 1.19441 1.17906 1.19994 0.94795 0.90348 1.44414 0.89133 1.18965 0.88106 0.93456 0.89199 1.21919 0.99455 0.93664 1.17707 1.21110 0.93819 0.97439 0.94847 1.21874 0.95699 0.97757 1.21796 1.20024 0.89760 0.88979 0.94200 1.58303 1.02938 1.56878 1.03456 1.22000 0.96052 0.95027 0.92241 1.21370 0.92005 1.01420 0.97864 1.21220 0.94618 0.99618 0.94330 0.89071 1.21984 0.91628 0.94133 0.90622 1.86411 1.27510 1.68529 1.57447 1.21781 0.90708 0.82778 0.98091 0.89220 1.86442 1.77949 1.18004 1.54698 1.22760 0.96955 0.98280 0.90505 1.68387 1.07268 1.27501 1.17711 0.91142 0.87170 0.85164 0.86977 0.93577 0.94251 0.90384 0.92573 0.93533 0.91877 0.75399 0.76500 0.93544 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -41.21 11.46 21.84 0.25 -40.96 16 2 C 0.02 1.19 5.50 85.29 0.47 1.66 16 3 Si 0.99 38.78 29.56 68.60 2.03 40.81 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 7 C -0.46 -25.77 9.14 23.46 0.21 -25.55 16 8 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 9 C 0.23 13.05 6.55 40.19 0.26 13.32 16 10 C -0.30 -15.40 9.83 22.87 0.22 -15.17 16 11 C -0.05 -2.15 10.15 22.39 0.23 -1.92 16 12 C -0.35 -15.71 8.75 22.73 0.20 -15.51 16 13 C 0.31 15.45 5.67 133.40 0.76 16.21 16 14 N -0.49 -21.06 4.58 -701.89 -3.22 -24.28 16 15 C 0.07 2.78 5.04 86.32 0.44 3.22 16 16 C -0.09 -2.79 5.09 30.65 0.16 -2.63 16 17 C -0.08 -2.04 2.33 -10.71 -0.02 -2.06 16 18 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 19 C 0.09 1.99 6.19 71.98 0.45 2.44 16 20 O -0.59 -12.06 13.25 -148.98 -1.97 -14.03 16 21 C 0.13 3.35 3.27 30.65 0.10 3.45 16 22 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 23 O -0.56 -16.79 11.98 -148.98 -1.78 -18.58 16 24 C 0.04 1.46 4.87 86.32 0.42 1.88 16 25 N -0.49 -28.56 7.89 -186.60 -1.47 -30.03 16 26 H 0.28 14.08 8.29 -92.71 -0.77 13.32 16 27 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 28 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.11 4.49 7.08 -2.91 -0.02 4.47 16 30 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 31 H 0.04 1.37 7.09 -2.39 -0.02 1.36 16 32 H 0.08 2.27 7.90 -2.39 -0.02 2.25 16 33 H 0.06 2.02 7.80 -2.39 -0.02 2.00 16 34 H 0.05 1.09 7.78 -2.39 -0.02 1.07 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.40 4.22 9.12 -74.06 -0.68 3.54 16 37 H 0.39 9.88 9.08 -74.05 -0.67 9.21 16 38 H 0.05 1.49 7.76 -2.38 -0.02 1.47 16 39 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -70.52 318.89 -2.56 -73.08 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.27 Total: 34.67 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 3.89 Total: -20.68 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -4.44 Total: -95.27 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -3.76 Total: -32.61 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -70.52 -2.56 -73.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117687476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.992 kcal (2) G-P(sol) polarization free energy of solvation -70.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds