Wall clock time and date at job start Tue Mar 31 2020 00:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48501 * 109.47169 * 269.99747 * 3 2 1 5 5 H 1.48500 * 109.47050 * 29.99756 * 3 2 1 6 6 H 1.48494 * 109.47151 * 150.00012 * 3 2 1 7 7 C 1.40024 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.41308 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.40593 * 119.78750 * 180.02562 * 9 7 2 11 11 C 1.38343 * 119.15145 * 179.97438 * 10 9 7 12 12 C 1.38639 * 118.67839 * 0.02562 * 11 10 9 13 13 C 1.39748 * 119.49295 * 359.97438 * 12 11 10 14 14 N 1.38830 * 119.58464 * 180.29999 * 13 12 11 15 15 C 1.46843 * 110.99963 * 55.50912 * 14 13 12 16 16 C 1.53042 * 109.52215 * 185.84103 * 15 14 13 17 17 C 1.53117 * 109.27616 * 300.82294 * 16 15 14 18 18 H 1.08998 * 109.52372 * 297.74606 * 17 16 15 19 19 C 1.53004 * 109.57242 * 177.58932 * 17 16 15 20 20 O 1.42907 * 109.46903 * 65.28390 * 19 17 16 21 21 C 1.53123 * 109.16388 * 57.65625 * 17 16 15 22 22 H 1.08997 * 109.50112 * 182.40417 * 21 17 16 23 23 O 1.42894 * 109.53377 * 62.30048 * 21 17 16 24 24 C 1.46845 * 111.00135 * 179.72532 * 14 13 12 25 25 N 1.31984 * 120.83198 * 0.02562 * 13 12 11 26 26 H 0.97002 * 120.00573 * 359.97438 * 1 2 3 27 27 H 1.08010 * 120.42231 * 0.02768 * 10 9 7 28 28 H 1.08001 * 120.65902 * 179.97438 * 11 10 9 29 29 H 1.08002 * 120.25074 * 180.02562 * 12 11 10 30 30 H 1.08996 * 109.46606 * 305.85610 * 15 14 13 31 31 H 1.09003 * 109.46387 * 65.82665 * 15 14 13 32 32 H 1.09001 * 109.50171 * 180.88311 * 16 15 14 33 33 H 1.08995 * 109.53296 * 60.78142 * 16 15 14 34 34 H 1.08997 * 109.46971 * 185.28456 * 19 17 16 35 35 H 1.08997 * 109.47303 * 305.28390 * 19 17 16 36 36 H 0.96706 * 113.99681 * 179.97438 * 20 19 17 37 37 H 0.96703 * 113.99971 * 180.17476 * 23 21 17 38 38 H 1.09005 * 109.45923 * 294.17136 * 24 14 13 39 39 H 1.08995 * 109.46491 * 54.14919 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5388 1.4403 0.7000 7 6 2.0075 -1.2126 0.0005 8 1 3.0875 -1.2125 0.0001 9 6 1.3010 -2.4364 0.0005 10 6 2.0086 -3.6513 0.0016 11 6 1.3036 -4.8417 0.0022 12 6 -0.0819 -4.7944 0.0010 13 6 -0.7280 -3.5552 0.0000 14 7 -2.1154 -3.5056 0.0052 15 6 -2.6647 -4.2594 1.1394 16 6 -4.1907 -4.3054 1.0320 17 6 -4.7406 -2.8764 1.0303 18 1 -4.4894 -2.3884 1.9720 19 6 -6.2610 -2.9125 0.8627 20 8 -6.8514 -3.5362 2.0050 21 6 -4.1161 -2.0988 -0.1316 22 1 -4.4712 -1.0685 -0.1124 23 8 -4.4878 -2.7088 -1.3692 24 6 -2.5924 -2.1168 0.0096 25 7 -0.0359 -2.4315 -0.0005 26 1 -0.4851 0.8400 0.0004 27 1 3.0887 -3.6552 0.0029 28 1 1.8224 -5.7890 0.0026 29 1 -0.6576 -5.7082 0.0018 30 1 -2.2690 -5.2749 1.1264 31 1 -2.3808 -3.7710 2.0716 32 1 -4.5990 -4.8516 1.8823 33 1 -4.4759 -4.8062 0.1068 34 1 -6.6403 -1.8951 0.7676 35 1 -6.5145 -3.4799 -0.0327 36 1 -7.8160 -3.5933 1.9672 37 1 -4.1241 -2.2684 -2.1495 38 1 -2.3089 -1.6385 0.9472 39 1 -2.1442 -1.5762 -0.8240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117687478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:50 Heat of formation + Delta-G solvation = -57.818058 kcal Electronic energy + Delta-G solvation = -22374.583990 eV Core-core repulsion = 19089.032558 eV Total energy + Delta-G solvation = -3285.551432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.65095 -38.00187 -36.49760 -35.33107 -33.58711 -32.67215 -30.56028 -29.45528 -29.16366 -26.53291 -25.23856 -22.82722 -22.30806 -21.04269 -20.32746 -19.37668 -17.54312 -17.29750 -16.74469 -15.83901 -15.06174 -14.88437 -14.56004 -14.34465 -14.27254 -14.14821 -13.59469 -13.30463 -12.96775 -12.67540 -12.27976 -12.21197 -11.81413 -11.66623 -11.26112 -11.14098 -11.06880 -10.82264 -10.61206 -10.53566 -10.41424 -10.09038 -9.99277 -9.76933 -9.47980 -9.36261 -8.65900 -8.01919 -7.61202 -6.90915 -6.44340 -4.53885 2.73051 3.01324 3.06026 3.09094 3.20569 3.91793 4.22557 4.39899 4.62891 4.82842 4.99478 5.14344 5.28106 5.47632 5.61824 5.67092 5.77125 5.79256 5.93171 6.07706 6.08629 6.20720 6.26136 6.29396 6.45613 6.59993 6.66509 6.72522 6.80182 6.83662 7.07056 7.12991 7.48322 7.61931 7.69998 7.79961 7.84007 8.03180 8.19292 8.37986 8.68933 8.98588 10.07483 10.28031 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.005694 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.200842 B = 4916.516647 C = 5961.945836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.082 0.918 9 C 0.276 3.724 10 C -0.296 4.296 11 C -0.045 4.045 12 C -0.320 4.320 13 C 0.321 3.679 14 N -0.469 5.469 15 C 0.065 3.935 16 C -0.100 4.100 17 C -0.080 4.080 18 H 0.082 0.918 19 C 0.086 3.914 20 O -0.576 6.576 21 C 0.110 3.890 22 H 0.054 0.946 23 O -0.558 6.558 24 C 0.052 3.948 25 N -0.510 5.510 26 H 0.269 0.731 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.374 0.626 37 H 0.376 0.624 38 H 0.054 0.946 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 -1.378 0.785 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.152 4.152 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.101 0.899 9 C 0.149 3.851 10 C -0.319 4.319 11 C -0.069 4.069 12 C -0.345 4.345 13 C 0.084 3.916 14 N -0.187 5.187 15 C -0.062 4.062 16 C -0.138 4.138 17 C -0.099 4.099 18 H 0.100 0.900 19 C 0.008 3.992 20 O -0.381 6.381 21 C 0.050 3.950 22 H 0.072 0.928 23 O -0.364 6.364 24 C -0.076 4.076 25 N -0.228 5.228 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.220 0.780 37 H 0.223 0.777 38 H 0.073 0.927 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.681 -1.094 0.954 10.779 hybrid contribution 0.922 0.743 0.047 1.185 sum -9.759 -0.351 1.002 9.817 Atomic orbital electron populations 1.70110 1.07141 1.27336 1.29547 1.26012 0.94896 1.00887 0.93363 0.86360 0.80525 0.80926 0.79176 1.19467 1.20229 1.18631 1.19575 0.94203 0.89366 1.43322 0.89938 1.18326 0.87442 0.91933 0.87372 1.21638 0.98575 0.93499 1.18170 1.20703 0.93602 0.96570 0.96066 1.20708 0.94262 0.95981 1.23564 1.19865 0.88256 0.90482 0.93038 1.58977 1.05459 1.13960 1.40347 1.22104 0.94491 0.98693 0.90898 1.21496 0.94115 0.95611 1.02551 1.21222 0.93023 0.97917 0.97710 0.89964 1.22164 0.93378 0.95829 0.87785 1.86482 1.24625 1.83031 1.43924 1.21942 0.94368 0.94355 0.84287 0.92825 1.86399 1.75731 1.58983 1.15255 1.22453 0.91895 0.88822 1.04412 1.68649 1.07857 1.24801 1.21472 0.91955 0.88531 0.88624 0.88678 0.90397 0.94939 0.91347 0.90626 0.94221 0.92683 0.77965 0.77676 0.92734 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.05 11.46 55.55 0.64 -17.42 16 2 C 0.07 1.81 5.50 -17.35 -0.10 1.71 16 3 Si 0.91 18.25 29.56 -169.99 -5.02 13.23 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.43 -11.44 9.14 -37.75 -0.34 -11.78 16 8 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 9 C 0.28 7.51 6.55 -85.00 -0.56 6.95 16 10 C -0.30 -7.38 9.83 -38.66 -0.38 -7.76 16 11 C -0.04 -1.03 10.15 -39.39 -0.40 -1.43 16 12 C -0.32 -7.47 9.19 -38.87 -0.36 -7.83 16 13 C 0.32 7.84 6.42 -155.31 -1.00 6.85 16 14 N -0.47 -9.80 4.56 -173.21 -0.79 -10.59 16 15 C 0.07 1.20 5.24 -3.83 -0.02 1.18 16 16 C -0.10 -1.57 5.10 -26.65 -0.14 -1.71 16 17 C -0.08 -1.20 2.33 -90.49 -0.21 -1.41 16 18 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.09 1.08 6.19 37.16 0.23 1.31 16 20 O -0.58 -6.94 13.26 -35.23 -0.47 -7.41 16 21 C 0.11 1.71 3.27 -26.65 -0.09 1.63 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 O -0.56 -8.47 11.99 -35.23 -0.42 -8.89 16 24 C 0.05 1.02 4.31 -3.84 -0.02 1.01 16 25 N -0.51 -13.60 6.16 -10.33 -0.06 -13.66 16 26 H 0.27 6.14 8.29 -40.82 -0.34 5.80 16 27 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 28 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.10 2.03 7.12 -52.49 -0.37 1.66 16 30 H 0.08 1.40 6.64 -51.93 -0.35 1.06 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 33 H 0.08 1.25 7.80 -51.93 -0.41 0.84 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 36 H 0.37 2.66 9.12 45.56 0.42 3.08 16 37 H 0.38 4.76 9.08 45.56 0.41 5.18 16 38 H 0.05 1.20 8.11 -51.93 -0.42 0.78 16 39 H 0.10 2.18 7.70 -51.93 -0.40 1.78 16 LS Contribution 317.60 15.07 4.79 4.79 Total: -1.00 -30.02 317.60 -8.73 -38.74 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.01 Total: 12.50 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.37 Total: -11.29 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: -0.22 Total: -41.67 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.89 Total: -16.30 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.23 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.02 -8.73 -38.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117687478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.073 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds