Wall clock time and date at job start Tue Mar 31 2020 00:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48501 * 109.47169 * 269.99747 * 3 2 1 5 5 H 1.48500 * 109.47050 * 29.99756 * 3 2 1 6 6 H 1.48494 * 109.47151 * 150.00012 * 3 2 1 7 7 C 1.40024 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.41308 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.40593 * 119.78750 * 180.02562 * 9 7 2 11 11 C 1.38343 * 119.15145 * 179.97438 * 10 9 7 12 12 C 1.38639 * 118.67839 * 0.02562 * 11 10 9 13 13 C 1.39748 * 119.49295 * 359.97438 * 12 11 10 14 14 N 1.38830 * 119.58464 * 180.29999 * 13 12 11 15 15 C 1.46843 * 110.99963 * 55.50912 * 14 13 12 16 16 C 1.53042 * 109.52215 * 185.84103 * 15 14 13 17 17 C 1.53117 * 109.27616 * 300.82294 * 16 15 14 18 18 H 1.08998 * 109.52372 * 297.74606 * 17 16 15 19 19 C 1.53004 * 109.57242 * 177.58932 * 17 16 15 20 20 O 1.42907 * 109.46903 * 65.28390 * 19 17 16 21 21 C 1.53123 * 109.16388 * 57.65625 * 17 16 15 22 22 H 1.08997 * 109.50112 * 182.40417 * 21 17 16 23 23 O 1.42894 * 109.53377 * 62.30048 * 21 17 16 24 24 C 1.46845 * 111.00135 * 179.72532 * 14 13 12 25 25 N 1.31984 * 120.83198 * 0.02562 * 13 12 11 26 26 H 0.97002 * 120.00573 * 359.97438 * 1 2 3 27 27 H 1.08010 * 120.42231 * 0.02768 * 10 9 7 28 28 H 1.08001 * 120.65902 * 179.97438 * 11 10 9 29 29 H 1.08002 * 120.25074 * 180.02562 * 12 11 10 30 30 H 1.08996 * 109.46606 * 305.85610 * 15 14 13 31 31 H 1.09003 * 109.46387 * 65.82665 * 15 14 13 32 32 H 1.09001 * 109.50171 * 180.88311 * 16 15 14 33 33 H 1.08995 * 109.53296 * 60.78142 * 16 15 14 34 34 H 1.08997 * 109.46971 * 185.28456 * 19 17 16 35 35 H 1.08997 * 109.47303 * 305.28390 * 19 17 16 36 36 H 0.96706 * 113.99681 * 179.97438 * 20 19 17 37 37 H 0.96703 * 113.99971 * 180.17476 * 23 21 17 38 38 H 1.09005 * 109.45923 * 294.17136 * 24 14 13 39 39 H 1.08995 * 109.46491 * 54.14919 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5388 1.4403 0.7000 7 6 2.0075 -1.2126 0.0005 8 1 3.0875 -1.2125 0.0001 9 6 1.3010 -2.4364 0.0005 10 6 2.0086 -3.6513 0.0016 11 6 1.3036 -4.8417 0.0022 12 6 -0.0819 -4.7944 0.0010 13 6 -0.7280 -3.5552 0.0000 14 7 -2.1154 -3.5056 0.0052 15 6 -2.6647 -4.2594 1.1394 16 6 -4.1907 -4.3054 1.0320 17 6 -4.7406 -2.8764 1.0303 18 1 -4.4894 -2.3884 1.9720 19 6 -6.2610 -2.9125 0.8627 20 8 -6.8514 -3.5362 2.0050 21 6 -4.1161 -2.0988 -0.1316 22 1 -4.4712 -1.0685 -0.1124 23 8 -4.4878 -2.7088 -1.3692 24 6 -2.5924 -2.1168 0.0096 25 7 -0.0359 -2.4315 -0.0005 26 1 -0.4851 0.8400 0.0004 27 1 3.0887 -3.6552 0.0029 28 1 1.8224 -5.7890 0.0026 29 1 -0.6576 -5.7082 0.0018 30 1 -2.2690 -5.2749 1.1264 31 1 -2.3808 -3.7710 2.0716 32 1 -4.5990 -4.8516 1.8823 33 1 -4.4759 -4.8062 0.1068 34 1 -6.6403 -1.8951 0.7676 35 1 -6.5145 -3.4799 -0.0327 36 1 -7.8160 -3.5933 1.9672 37 1 -4.1241 -2.2684 -2.1495 38 1 -2.3089 -1.6385 0.9472 39 1 -2.1442 -1.5762 -0.8240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117687478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:50 Heat of formation + Delta-G solvation = -80.560720 kcal Electronic energy + Delta-G solvation = -22375.570186 eV Core-core repulsion = 19089.032558 eV Total energy + Delta-G solvation = -3286.537628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20442 -39.60065 -37.58554 -36.77882 -35.36935 -34.07800 -32.38702 -30.97294 -30.87053 -28.08400 -26.91490 -24.34047 -23.74402 -22.80569 -21.99392 -20.69596 -19.39698 -18.40053 -18.07565 -17.41558 -16.66744 -16.42146 -16.25704 -15.92422 -15.56043 -15.46559 -15.17308 -14.75427 -14.54508 -14.12028 -13.89852 -13.65499 -13.45036 -13.02608 -12.83624 -12.79881 -12.66693 -12.62284 -12.26951 -11.97834 -11.79598 -11.62972 -11.40392 -11.20524 -10.78548 -10.71847 -10.44221 -9.91414 -9.51312 -8.74124 -8.29476 -6.50612 0.88562 1.17921 1.40430 1.51462 1.54269 2.22395 2.75689 2.95464 3.26665 3.44942 3.76339 3.84267 3.96040 4.03124 4.27089 4.32154 4.39406 4.44812 4.53395 4.58954 4.64828 4.78418 4.83415 4.89646 4.91962 4.94622 5.03877 5.04719 5.16148 5.27405 5.31583 5.42846 5.66341 5.88552 5.97980 6.01963 6.32292 6.50352 6.78292 6.89766 6.96379 7.06123 8.16849 8.44219 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.005694 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.200842 B = 4916.516647 C = 5961.945836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.029 3.971 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.241 3.759 10 C -0.320 4.320 11 C -0.042 4.042 12 C -0.327 4.327 13 C 0.303 3.697 14 N -0.467 5.467 15 C 0.066 3.934 16 C -0.087 4.087 17 C -0.084 4.084 18 H 0.074 0.926 19 C 0.096 3.904 20 O -0.590 6.590 21 C 0.123 3.877 22 H 0.074 0.926 23 O -0.560 6.560 24 C 0.064 3.936 25 N -0.532 5.532 26 H 0.277 0.723 27 H 0.106 0.894 28 H 0.132 0.868 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.017 0.983 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.387 0.613 38 H 0.024 0.976 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.489 -1.318 0.793 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.193 4.193 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.499 4.499 8 H 0.103 0.897 9 C 0.114 3.886 10 C -0.343 4.343 11 C -0.066 4.066 12 C -0.351 4.351 13 C 0.065 3.935 14 N -0.186 5.186 15 C -0.061 4.061 16 C -0.125 4.125 17 C -0.102 4.102 18 H 0.093 0.907 19 C 0.019 3.981 20 O -0.399 6.399 21 C 0.063 3.937 22 H 0.092 0.908 23 O -0.367 6.367 24 C -0.064 4.064 25 N -0.251 5.251 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.150 0.850 29 H 0.134 0.866 30 H 0.100 0.900 31 H 0.035 0.965 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.247 0.753 37 H 0.236 0.764 38 H 0.043 0.957 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.019 -1.060 0.957 12.104 hybrid contribution 1.277 0.629 0.045 1.425 sum -10.742 -0.431 1.001 10.797 Atomic orbital electron populations 1.70197 1.08486 1.28700 1.29179 1.26865 0.95819 1.04035 0.92576 0.85186 0.78993 0.76058 0.79315 1.18868 1.19244 1.18380 1.19911 0.94609 0.90433 1.44926 0.89690 1.18827 0.88232 0.93274 0.88263 1.21820 0.99227 0.93749 1.19490 1.21089 0.93670 0.97458 0.94360 1.21031 0.94807 0.96409 1.22885 1.20389 0.89841 0.90626 0.92622 1.59076 1.03737 1.14688 1.41076 1.22190 0.96486 0.98144 0.89266 1.21400 0.91733 0.96482 1.02894 1.21226 0.95185 0.96937 0.96879 0.90718 1.21962 0.91329 0.96916 0.87912 1.86419 1.26864 1.82979 1.43620 1.21795 0.91091 0.95811 0.84999 0.90816 1.86376 1.75492 1.59374 1.15477 1.22306 0.94857 0.87682 1.01550 1.68644 1.07935 1.26082 1.22439 0.91234 0.87616 0.85013 0.86576 0.90015 0.96452 0.89997 0.90896 0.92572 0.92582 0.75334 0.76428 0.95724 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.37 11.46 21.84 0.25 -38.12 16 2 C 0.03 1.48 5.50 85.29 0.47 1.95 16 3 Si 0.98 37.75 29.56 68.60 2.03 39.78 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 7 C -0.47 -25.49 9.14 23.46 0.21 -25.27 16 8 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16 9 C 0.24 13.55 6.55 40.19 0.26 13.81 16 10 C -0.32 -16.26 9.83 22.87 0.22 -16.04 16 11 C -0.04 -1.89 10.15 22.39 0.23 -1.66 16 12 C -0.33 -15.14 9.19 22.73 0.21 -14.94 16 13 C 0.30 15.09 6.42 133.40 0.86 15.95 16 14 N -0.47 -19.74 4.56 -701.92 -3.20 -22.94 16 15 C 0.07 2.39 5.24 86.33 0.45 2.84 16 16 C -0.09 -2.62 5.10 30.65 0.16 -2.46 16 17 C -0.08 -2.36 2.33 -10.71 -0.02 -2.38 16 18 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 19 C 0.10 2.15 6.19 71.98 0.45 2.59 16 20 O -0.59 -12.47 13.26 -148.98 -1.98 -14.45 16 21 C 0.12 3.70 3.27 30.65 0.10 3.80 16 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 23 O -0.56 -16.08 11.99 -148.98 -1.79 -17.87 16 24 C 0.06 2.58 4.31 86.32 0.37 2.95 16 25 N -0.53 -29.42 6.16 -186.60 -1.15 -30.57 16 26 H 0.28 12.88 8.29 -92.71 -0.77 12.11 16 27 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 28 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 29 H 0.12 4.79 7.12 -2.91 -0.02 4.77 16 30 H 0.08 2.87 6.64 -2.39 -0.02 2.86 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 2.26 7.91 -2.39 -0.02 2.24 16 33 H 0.07 2.25 7.80 -2.39 -0.02 2.24 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.26 7.79 -2.39 -0.02 1.24 16 36 H 0.40 4.35 9.12 -74.05 -0.68 3.67 16 37 H 0.39 9.32 9.08 -74.06 -0.67 8.64 16 38 H 0.02 1.13 8.11 -2.38 -0.02 1.11 16 39 H 0.07 3.21 7.70 -2.39 -0.02 3.19 16 Total: -1.00 -65.96 317.60 -2.14 -68.10 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.27 Total: 34.91 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.96 Total: -18.85 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -4.10 Total: -91.62 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -3.76 Total: -32.32 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -65.96 -2.14 -68.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117687478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.457 kcal (2) G-P(sol) polarization free energy of solvation -65.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds