Wall clock time and date at job start Tue Mar 31 2020 00:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99871 * 2 1 4 4 H 1.48494 * 109.46733 * 269.99389 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00072 * 3 2 1 6 6 H 1.48499 * 109.46615 * 150.00099 * 3 2 1 7 7 C 1.37881 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99647 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.27826 * 302.08434 * 9 7 2 11 11 C 1.54591 * 110.31007 * 64.28669 * 9 7 2 12 12 C 1.54933 * 102.92615 * 140.86793 * 11 9 7 13 13 N 1.48534 * 103.22918 * 322.58639 * 12 11 9 14 14 C 1.46900 * 111.00336 * 159.72037 * 13 12 11 15 15 C 1.52993 * 109.47001 * 52.60323 * 14 13 12 16 16 H 1.09004 * 109.47131 * 304.99451 * 15 14 13 17 17 O 1.42899 * 109.47241 * 65.00042 * 15 14 13 18 18 C 1.50702 * 109.46809 * 184.99978 * 15 14 13 19 19 C 1.38236 * 119.61602 * 124.72744 * 18 15 14 20 20 C 1.38626 * 119.15652 * 179.75454 * 19 18 15 21 21 C 1.38677 * 118.42491 * 0.50743 * 20 19 18 22 22 C 1.38181 * 119.16072 * 359.73774 * 21 20 19 23 23 N 1.31850 * 119.61902 * 305.00137 * 18 15 14 24 24 C 1.47906 * 105.81681 * 39.20123 * 13 12 11 25 25 H 0.96998 * 119.99863 * 0.02562 * 1 2 3 26 26 H 0.96699 * 113.99640 * 57.91527 * 10 9 7 27 27 H 1.09008 * 110.72317 * 259.22898 * 11 9 7 28 28 H 1.09006 * 110.72857 * 22.33125 * 11 9 7 29 29 H 1.09004 * 110.67035 * 204.14644 * 12 11 9 30 30 H 1.09002 * 110.66721 * 81.02111 * 12 11 9 31 31 H 1.08996 * 109.46735 * 172.60414 * 14 13 12 32 32 H 1.09001 * 109.46927 * 292.60299 * 14 13 12 33 33 H 0.96699 * 113.99632 * 60.00299 * 17 15 14 34 34 H 1.07996 * 120.42014 * 359.97438 * 19 18 15 35 35 H 1.08000 * 120.79130 * 180.21602 * 20 19 18 36 36 H 1.07997 * 120.41784 * 179.75185 * 21 20 19 37 37 H 1.07993 * 119.61863 * 180.02562 * 22 21 20 38 38 H 1.09003 * 109.91125 * 94.02808 * 24 13 12 39 39 H 1.08997 * 109.91647 * 215.12246 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.3863 -2.5717 1.1359 11 6 0.4384 -2.6495 -1.3060 12 6 0.6033 -4.1522 -1.6456 13 7 2.0064 -4.4379 -1.2508 14 6 2.2123 -5.8776 -1.0436 15 6 1.7308 -6.6443 -2.2769 16 1 0.6947 -6.3794 -2.4878 17 8 2.5476 -6.3033 -3.3987 18 6 1.8276 -8.1256 -2.0168 19 6 0.7068 -8.9204 -2.1683 20 6 0.8078 -10.2826 -1.9316 21 6 2.0351 -10.7952 -1.5393 22 6 3.1105 -9.9381 -1.4037 23 7 2.9789 -8.6476 -1.6422 24 6 2.2344 -3.6841 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2555 -1.8502 1.1883 27 1 -0.6105 -2.4048 -1.1382 28 1 0.8573 -2.0248 -2.0949 29 1 0.4613 -4.3233 -2.7127 30 1 -0.0912 -4.7569 -1.0623 31 1 3.2726 -6.0737 -0.8848 32 1 1.6476 -6.2033 -0.1699 33 1 3.4845 -6.5118 -3.2809 34 1 -0.2347 -8.4862 -2.4707 35 1 -0.0502 -10.9286 -2.0453 36 1 2.1491 -11.8509 -1.3425 37 1 4.0698 -10.3294 -1.0990 38 1 2.0423 -4.3258 0.8610 39 1 3.2608 -3.3186 0.0327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118500896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:11 Heat of formation + Delta-G solvation = -55.310520 kcal Electronic energy + Delta-G solvation = -21761.257689 eV Core-core repulsion = 18475.814992 eV Total energy + Delta-G solvation = -3285.442697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.52999 -38.54575 -36.76722 -34.49706 -32.66985 -32.02332 -32.01572 -30.15716 -28.16940 -27.08196 -24.60568 -23.88560 -23.16720 -21.72934 -19.98065 -19.32566 -17.64075 -17.05536 -16.61198 -16.31115 -15.44260 -15.07749 -14.83654 -14.74597 -14.47067 -13.99774 -13.75941 -13.66351 -13.29897 -12.90786 -12.37211 -12.19728 -11.97785 -11.65259 -11.43231 -11.16344 -10.98731 -10.71229 -10.54134 -10.44486 -10.29523 -10.18199 -10.08596 -9.86944 -9.47512 -9.25588 -9.06503 -8.53746 -8.05100 -7.70377 -6.15030 -4.20631 0.85750 1.05566 3.28157 3.34658 3.39054 3.54720 4.00851 4.33410 4.38199 4.58461 4.63409 4.83276 4.85755 4.92966 5.11270 5.20143 5.30267 5.40627 5.49039 5.75565 5.82385 5.91684 5.93964 6.03937 6.12828 6.26522 6.31622 6.44593 6.47278 6.57348 6.98476 7.12273 7.34657 7.57512 7.68346 7.74409 7.76978 7.83624 7.90511 8.21843 8.80894 9.46103 9.57579 10.92722 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039811 B = 0.003683 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.149601 B = 7600.604998 C = 7710.780252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.243 3.757 10 O -0.596 6.596 11 C -0.117 4.117 12 C 0.027 3.973 13 N -0.503 5.503 14 C 0.025 3.975 15 C 0.163 3.837 16 H 0.112 0.888 17 O -0.538 6.538 18 C 0.100 3.900 19 C -0.159 4.159 20 C -0.076 4.076 21 C -0.177 4.177 22 C 0.100 3.900 23 N -0.474 5.474 24 C 0.054 3.946 25 H 0.266 0.734 26 H 0.383 0.617 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.378 0.622 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.034 0.966 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 -18.725 -3.971 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.203 3.797 10 O -0.406 6.406 11 C -0.156 4.156 12 C -0.100 4.100 13 N -0.227 5.227 14 C -0.104 4.104 15 C 0.103 3.897 16 H 0.130 0.870 17 O -0.342 6.342 18 C -0.038 4.038 19 C -0.179 4.179 20 C -0.102 4.102 21 C -0.197 4.197 22 C -0.058 4.058 23 N -0.184 5.184 24 C -0.073 4.073 25 H 0.076 0.924 26 H 0.235 0.765 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.226 0.774 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.052 0.948 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.819 -18.219 -4.399 18.830 hybrid contribution -0.737 0.184 0.731 1.054 sum 1.082 -18.034 -3.669 18.435 Atomic orbital electron populations 1.69620 1.05943 1.27342 1.51251 1.25016 0.95003 0.99453 0.93940 0.86449 0.79827 0.82691 0.78174 1.20522 1.21212 1.19819 1.21714 0.93573 0.90626 1.50573 0.91960 1.19349 0.86235 0.91552 0.82567 1.86079 1.51993 1.53924 1.48576 1.22962 1.00675 0.91525 1.00410 1.23340 0.88427 0.99012 0.99228 1.64853 1.23321 1.04608 1.29940 1.22885 1.02021 0.89975 0.95497 1.20890 0.96553 0.84954 0.87311 0.87023 1.86583 1.22783 1.85939 1.38941 1.22203 0.89183 0.98102 0.94352 1.22030 1.00072 0.94455 1.01308 1.21603 0.97894 0.95206 0.95461 1.22155 0.94185 1.01458 1.01872 1.22786 0.98903 0.88703 0.95367 1.67457 1.25988 1.14200 1.10733 1.22893 1.00584 0.95093 0.88764 0.92400 0.76520 0.91811 0.91310 0.91281 0.95174 0.89848 0.94680 0.77411 0.84570 0.84747 0.84821 0.82638 0.94812 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 10.88 55.43 0.60 -23.84 16 2 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.49 8.10 -34.44 -0.28 -14.77 16 8 H 0.06 1.71 7.35 -52.49 -0.39 1.33 16 9 C 0.24 6.21 0.99 -90.42 -0.09 6.12 16 10 O -0.60 -15.89 12.93 -35.23 -0.46 -16.35 16 11 C -0.12 -2.78 5.50 -24.88 -0.14 -2.92 16 12 C 0.03 0.55 5.09 -1.90 -0.01 0.54 16 13 N -0.50 -10.09 5.34 -230.45 -1.23 -11.32 16 14 C 0.03 0.42 4.47 -3.83 -0.02 0.41 16 15 C 0.16 2.36 3.01 -27.89 -0.08 2.28 16 16 H 0.11 1.59 6.25 -51.93 -0.32 1.27 16 17 O -0.54 -8.20 13.27 -35.23 -0.47 -8.67 16 18 C 0.10 1.29 5.78 -82.58 -0.48 0.81 16 19 C -0.16 -1.71 9.71 -39.44 -0.38 -2.09 16 20 C -0.08 -0.66 10.18 -39.28 -0.40 -1.06 16 21 C -0.18 -1.47 10.11 -39.44 -0.40 -1.87 16 22 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 23 N -0.47 -6.00 9.96 -9.47 -0.09 -6.10 16 24 C 0.05 1.23 6.16 -2.75 -0.02 1.21 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.38 10.36 7.05 45.56 0.32 10.68 16 27 H 0.06 1.56 8.06 -51.92 -0.42 1.14 16 28 H 0.07 1.74 7.86 -51.93 -0.41 1.33 16 29 H 0.07 1.29 7.56 -51.93 -0.39 0.89 16 30 H 0.03 0.58 8.01 -51.93 -0.42 0.17 16 31 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 32 H 0.04 0.61 7.81 -51.93 -0.41 0.20 16 33 H 0.38 4.93 9.02 45.56 0.41 5.34 16 34 H 0.14 1.24 7.95 -52.49 -0.42 0.82 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.03 0.76 7.39 -51.93 -0.38 0.38 16 39 H 0.08 1.80 7.40 -51.93 -0.38 1.42 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -30.24 321.04 -8.44 -38.68 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -4.03 Total: 15.49 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.58 Total: -8.84 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.72 Total: -41.26 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.92 Total: -25.02 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.24 -8.44 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118500896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.629 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds