Wall clock time and date at job start Tue Mar 31 2020 00:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99871 * 2 1 4 4 H 1.48494 * 109.46733 * 269.99389 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00072 * 3 2 1 6 6 H 1.48499 * 109.46615 * 150.00099 * 3 2 1 7 7 C 1.37881 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99647 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.27826 * 302.08434 * 9 7 2 11 11 C 1.54591 * 110.31007 * 64.28669 * 9 7 2 12 12 C 1.54933 * 102.92615 * 140.86793 * 11 9 7 13 13 N 1.48534 * 103.22918 * 322.58639 * 12 11 9 14 14 C 1.46900 * 111.00336 * 159.72037 * 13 12 11 15 15 C 1.52993 * 109.47001 * 52.60323 * 14 13 12 16 16 H 1.09004 * 109.47131 * 304.99451 * 15 14 13 17 17 O 1.42899 * 109.47241 * 65.00042 * 15 14 13 18 18 C 1.50702 * 109.46809 * 184.99978 * 15 14 13 19 19 C 1.38236 * 119.61602 * 124.72744 * 18 15 14 20 20 C 1.38626 * 119.15652 * 179.75454 * 19 18 15 21 21 C 1.38677 * 118.42491 * 0.50743 * 20 19 18 22 22 C 1.38181 * 119.16072 * 359.73774 * 21 20 19 23 23 N 1.31850 * 119.61902 * 305.00137 * 18 15 14 24 24 C 1.47906 * 105.81681 * 39.20123 * 13 12 11 25 25 H 0.96998 * 119.99863 * 0.02562 * 1 2 3 26 26 H 0.96699 * 113.99640 * 57.91527 * 10 9 7 27 27 H 1.09008 * 110.72317 * 259.22898 * 11 9 7 28 28 H 1.09006 * 110.72857 * 22.33125 * 11 9 7 29 29 H 1.09004 * 110.67035 * 204.14644 * 12 11 9 30 30 H 1.09002 * 110.66721 * 81.02111 * 12 11 9 31 31 H 1.08996 * 109.46735 * 172.60414 * 14 13 12 32 32 H 1.09001 * 109.46927 * 292.60299 * 14 13 12 33 33 H 0.96699 * 113.99632 * 60.00299 * 17 15 14 34 34 H 1.07996 * 120.42014 * 359.97438 * 19 18 15 35 35 H 1.08000 * 120.79130 * 180.21602 * 20 19 18 36 36 H 1.07997 * 120.41784 * 179.75185 * 21 20 19 37 37 H 1.07993 * 119.61863 * 180.02562 * 22 21 20 38 38 H 1.09003 * 109.91125 * 94.02808 * 24 13 12 39 39 H 1.08997 * 109.91647 * 215.12246 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.3863 -2.5717 1.1359 11 6 0.4384 -2.6495 -1.3060 12 6 0.6033 -4.1522 -1.6456 13 7 2.0064 -4.4379 -1.2508 14 6 2.2123 -5.8776 -1.0436 15 6 1.7308 -6.6443 -2.2769 16 1 0.6947 -6.3794 -2.4878 17 8 2.5476 -6.3033 -3.3987 18 6 1.8276 -8.1256 -2.0168 19 6 0.7068 -8.9204 -2.1683 20 6 0.8078 -10.2826 -1.9316 21 6 2.0351 -10.7952 -1.5393 22 6 3.1105 -9.9381 -1.4037 23 7 2.9789 -8.6476 -1.6422 24 6 2.2344 -3.6841 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2555 -1.8502 1.1883 27 1 -0.6105 -2.4048 -1.1382 28 1 0.8573 -2.0248 -2.0949 29 1 0.4613 -4.3233 -2.7127 30 1 -0.0912 -4.7569 -1.0623 31 1 3.2726 -6.0737 -0.8848 32 1 1.6476 -6.2033 -0.1699 33 1 3.4845 -6.5118 -3.2809 34 1 -0.2347 -8.4862 -2.4707 35 1 -0.0502 -10.9286 -2.0453 36 1 2.1491 -11.8509 -1.3425 37 1 4.0698 -10.3294 -1.0990 38 1 2.0423 -4.3258 0.8610 39 1 3.2608 -3.3186 0.0327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118500896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:11 Heat of formation + Delta-G solvation = -80.346358 kcal Electronic energy + Delta-G solvation = -21762.343325 eV Core-core repulsion = 18475.814992 eV Total energy + Delta-G solvation = -3286.528332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38087 -40.16584 -38.11011 -36.27032 -34.12757 -33.43073 -32.99275 -31.68585 -29.95600 -28.56758 -26.31448 -24.94810 -24.23384 -22.89535 -21.51151 -21.24254 -19.12561 -18.60144 -17.51464 -17.24455 -16.91626 -16.56857 -16.52577 -16.07676 -15.74323 -15.64050 -14.98239 -14.92395 -14.39481 -14.06011 -13.97119 -13.81941 -13.38429 -13.25152 -13.02008 -12.93646 -12.64207 -12.43078 -12.32176 -12.07628 -12.01623 -11.92787 -11.31442 -11.05516 -10.83151 -10.61129 -10.31687 -10.10097 -10.01229 -9.33629 -8.21259 -6.34764 0.09870 0.34783 1.41571 1.42851 1.52969 2.40061 2.72830 2.92155 3.06440 3.33214 3.54297 3.63453 3.91705 3.95408 4.05921 4.14290 4.20823 4.24243 4.31296 4.35735 4.45074 4.56585 4.63040 4.67167 4.78467 4.83597 4.91369 5.08566 5.22684 5.24643 5.25104 5.40964 5.60154 5.75547 5.76582 5.96277 6.13006 6.19520 6.69070 6.72351 6.99503 7.34928 7.44804 8.84970 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039811 B = 0.003683 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.149601 B = 7600.604998 C = 7710.780252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.227 3.773 10 O -0.602 6.602 11 C -0.110 4.110 12 C 0.041 3.959 13 N -0.507 5.507 14 C 0.032 3.968 15 C 0.172 3.828 16 H 0.113 0.887 17 O -0.552 6.552 18 C 0.075 3.925 19 C -0.169 4.169 20 C -0.076 4.076 21 C -0.166 4.166 22 C 0.084 3.916 23 N -0.501 5.501 24 C 0.062 3.938 25 H 0.270 0.730 26 H 0.378 0.622 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.030 0.970 33 H 0.385 0.615 34 H 0.148 0.852 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.031 0.969 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 -20.598 -4.376 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.594 4.594 8 H 0.071 0.929 9 C 0.188 3.812 10 O -0.412 6.412 11 C -0.148 4.148 12 C -0.087 4.087 13 N -0.232 5.232 14 C -0.096 4.096 15 C 0.111 3.889 16 H 0.130 0.870 17 O -0.357 6.357 18 C -0.063 4.063 19 C -0.189 4.189 20 C -0.102 4.102 21 C -0.186 4.186 22 C -0.073 4.073 23 N -0.211 5.211 24 C -0.066 4.066 25 H 0.079 0.921 26 H 0.229 0.771 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.234 0.766 34 H 0.165 0.835 35 H 0.184 0.816 36 H 0.186 0.814 37 H 0.196 0.804 38 H 0.049 0.951 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.798 -20.107 -4.808 20.752 hybrid contribution -0.717 0.672 0.876 1.317 sum 1.080 -19.435 -3.933 19.858 Atomic orbital electron populations 1.69694 1.06778 1.28178 1.50858 1.25705 0.95897 1.02295 0.93382 0.85505 0.78601 0.78959 0.78226 1.20085 1.20429 1.19799 1.21956 0.93424 0.92160 1.51830 0.92888 1.19592 0.86721 0.92124 0.82812 1.86071 1.52049 1.53636 1.49414 1.22745 0.99282 0.93886 0.98936 1.23231 0.88694 0.96304 1.00458 1.64816 1.23250 1.06708 1.28398 1.22882 1.02119 0.87863 0.96783 1.20732 0.96130 0.86268 0.85725 0.86976 1.86544 1.23522 1.86275 1.39408 1.21916 0.90364 0.97199 0.96815 1.22244 0.99852 0.95502 1.01306 1.22024 0.99234 0.94663 0.94300 1.22570 0.93332 1.02942 0.99734 1.23290 1.00655 0.88076 0.95263 1.67372 1.26242 1.15883 1.11652 1.22717 0.99405 0.94494 0.90005 0.92102 0.77109 0.93054 0.93459 0.89449 0.94192 0.89803 0.95137 0.76596 0.83453 0.81638 0.81400 0.80417 0.95070 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.06 10.88 21.45 0.23 -49.82 16 2 C 0.03 1.47 5.26 84.66 0.45 1.92 16 3 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.56 -31.17 8.10 25.60 0.21 -30.96 16 8 H 0.05 2.99 7.35 -2.91 -0.02 2.96 16 9 C 0.23 11.83 0.99 -10.66 -0.01 11.82 16 10 O -0.60 -32.74 12.93 -148.98 -1.93 -34.66 16 11 C -0.11 -5.30 5.50 31.80 0.17 -5.13 16 12 C 0.04 1.61 5.09 86.65 0.44 2.05 16 13 N -0.51 -20.32 5.34 -883.02 -4.72 -25.04 16 14 C 0.03 1.07 4.47 86.30 0.39 1.45 16 15 C 0.17 4.84 3.01 29.85 0.09 4.93 16 16 H 0.11 3.09 6.25 -2.39 -0.01 3.07 16 17 O -0.55 -16.52 13.27 -148.98 -1.98 -18.50 16 18 C 0.07 1.85 5.78 42.56 0.25 2.09 16 19 C -0.17 -3.32 9.71 22.36 0.22 -3.10 16 20 C -0.08 -1.09 10.18 22.47 0.23 -0.87 16 21 C -0.17 -2.20 10.11 22.36 0.23 -1.97 16 22 C 0.08 1.48 11.18 84.67 0.95 2.43 16 23 N -0.50 -12.12 9.96 -183.88 -1.83 -13.95 16 24 C 0.06 2.85 6.16 86.45 0.53 3.38 16 25 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 26 H 0.38 20.93 7.05 -74.06 -0.52 20.41 16 27 H 0.05 2.56 8.06 -2.38 -0.02 2.54 16 28 H 0.05 2.44 7.86 -2.38 -0.02 2.42 16 29 H 0.09 3.16 7.56 -2.38 -0.02 3.15 16 30 H 0.04 1.51 8.01 -2.39 -0.02 1.49 16 31 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 32 H 0.03 1.04 7.81 -2.39 -0.02 1.02 16 33 H 0.39 9.98 9.02 -74.06 -0.67 9.31 16 34 H 0.15 2.40 7.95 -2.91 -0.02 2.38 16 35 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.03 1.43 7.39 -2.39 -0.02 1.41 16 39 H 0.07 3.34 7.40 -2.39 -0.02 3.32 16 Total: -1.00 -65.05 321.04 -4.18 -69.23 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.12 Total: 39.20 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 4.13 Total: -11.96 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -6.32 Total: -88.82 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -3.90 Total: -53.16 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -65.05 -4.18 -69.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118500896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.116 kcal (2) G-P(sol) polarization free energy of solvation -65.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds