Wall clock time and date at job start Tue Mar 31 2020 00:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00186 * 2 1 4 4 H 1.48500 * 109.47140 * 270.00448 * 3 2 1 5 5 H 1.48504 * 109.46863 * 29.99745 * 3 2 1 6 6 H 1.48502 * 109.47413 * 150.00155 * 3 2 1 7 7 C 1.37884 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99676 * 0.02562 * 7 2 1 10 10 O 1.42896 * 110.63101 * 56.89431 * 9 7 2 11 11 C 1.55136 * 110.70586 * 293.59671 * 9 7 2 12 12 C 1.54910 * 101.65131 * 205.96655 * 11 9 7 13 13 N 1.47839 * 104.79725 * 37.07211 * 12 11 9 14 14 C 1.46901 * 111.00094 * 213.63685 * 13 12 11 15 15 C 1.53000 * 109.46769 * 290.84320 * 14 13 12 16 16 H 1.09002 * 109.47069 * 304.99474 * 15 14 13 17 17 O 1.42899 * 109.47405 * 64.99669 * 15 14 13 18 18 C 1.50703 * 109.46801 * 184.99750 * 15 14 13 19 19 C 1.38230 * 119.61522 * 124.99784 * 18 15 14 20 20 C 1.38630 * 119.15900 * 179.97438 * 19 18 15 21 21 C 1.38669 * 118.42129 * 359.97438 * 20 19 18 22 22 C 1.38183 * 119.16261 * 0.02562 * 21 20 19 23 23 N 1.31848 * 119.61988 * 304.72536 * 18 15 14 24 24 C 1.47445 * 108.56660 * 335.90202 * 13 12 11 25 25 H 0.97001 * 120.00275 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00197 * 303.11008 * 10 9 7 27 27 H 1.08999 * 110.99026 * 324.05732 * 11 9 7 28 28 H 1.08998 * 110.99243 * 87.83334 * 11 9 7 29 29 H 1.08995 * 110.37196 * 278.24067 * 12 11 9 30 30 H 1.09005 * 110.37080 * 155.89665 * 12 11 9 31 31 H 1.09002 * 109.47401 * 170.84027 * 14 13 12 32 32 H 1.09001 * 109.46874 * 50.84040 * 14 13 12 33 33 H 0.96702 * 113.99557 * 60.00388 * 17 15 14 34 34 H 1.07998 * 120.42315 * 0.02562 * 19 18 15 35 35 H 1.07999 * 120.78942 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.42009 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.61336 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.88966 * 120.39554 * 24 13 12 39 39 H 1.09002 * 109.88969 * 241.58336 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.3671 -2.5702 -1.1200 11 6 0.4731 -2.6834 1.3301 12 6 0.3727 -4.2265 1.4225 13 7 1.6616 -4.7211 0.8938 14 6 1.4855 -5.9954 0.1844 15 6 1.1361 -7.0946 1.1897 16 1 1.8992 -7.1319 1.9671 17 8 -0.1336 -6.8127 1.7816 18 6 1.0760 -8.4231 0.4807 19 6 1.8492 -9.4752 0.9345 20 6 1.7862 -10.6932 0.2755 21 6 0.9437 -10.8081 -0.8198 22 6 0.2006 -9.7124 -1.2157 23 7 0.2826 -8.5699 -0.5620 24 6 2.2283 -3.6935 0.0011 25 1 -0.4850 0.8400 0.0004 26 1 -0.2677 -1.8423 -1.1671 27 1 1.0356 -2.2777 2.1710 28 1 -0.5163 -2.2301 1.2697 29 1 -0.4530 -4.5903 0.8111 30 1 0.2438 -4.5369 2.4595 31 1 2.4101 -6.2551 -0.3313 32 1 0.6791 -5.8981 -0.5425 33 1 -0.8615 -6.7648 1.1468 34 1 2.4936 -9.3502 1.7921 35 1 2.3792 -11.5326 0.6074 36 1 0.8692 -11.7423 -1.3568 37 1 -0.4576 -9.7937 -2.0681 38 1 3.2022 -3.3754 0.3731 39 1 2.3268 -4.0926 -1.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118500897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:13 Heat of formation + Delta-G solvation = -57.368395 kcal Electronic energy + Delta-G solvation = -21862.826264 eV Core-core repulsion = 18577.294331 eV Total energy + Delta-G solvation = -3285.531933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48679 -38.53602 -36.71007 -34.28947 -32.63842 -32.05274 -32.01628 -30.13906 -27.99630 -27.18678 -24.65747 -23.79396 -23.12791 -21.37878 -20.06927 -19.38058 -17.57466 -17.07336 -16.57730 -16.24567 -15.43397 -15.13110 -14.86064 -14.63423 -14.29363 -13.92011 -13.87650 -13.40126 -13.32416 -12.89789 -12.29726 -12.11475 -11.83792 -11.66869 -11.31741 -11.19793 -11.06334 -10.86613 -10.51112 -10.39551 -10.32562 -10.07873 -9.98183 -9.81026 -9.36206 -9.24132 -9.12642 -8.56267 -8.01460 -7.56120 -6.16522 -4.23322 0.89736 1.09446 3.25817 3.32705 3.36416 3.59001 4.06484 4.33784 4.40343 4.63482 4.68151 4.86771 4.89267 4.99657 5.10388 5.33602 5.39592 5.45202 5.55890 5.78019 5.87908 5.95459 5.99900 6.25068 6.27637 6.31650 6.40622 6.49721 6.55250 6.73646 7.01749 7.20637 7.50658 7.56510 7.74156 7.76291 7.83301 7.85902 7.89588 8.20387 8.77807 9.44422 9.58521 10.90712 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042373 B = 0.003675 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.646167 B = 7618.229610 C = 7647.831156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.236 3.764 10 O -0.592 6.592 11 C -0.134 4.134 12 C 0.053 3.947 13 N -0.528 5.528 14 C 0.031 3.969 15 C 0.167 3.833 16 H 0.117 0.883 17 O -0.546 6.546 18 C 0.101 3.899 19 C -0.158 4.158 20 C -0.077 4.077 21 C -0.177 4.177 22 C 0.100 3.900 23 N -0.473 5.473 24 C 0.057 3.943 25 H 0.267 0.733 26 H 0.383 0.617 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.377 0.623 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.156 0.844 38 H 0.078 0.922 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.097 -18.752 0.603 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.195 3.805 10 O -0.403 6.403 11 C -0.173 4.173 12 C -0.074 4.074 13 N -0.252 5.252 14 C -0.099 4.099 15 C 0.106 3.894 16 H 0.135 0.865 17 O -0.350 6.350 18 C -0.037 4.037 19 C -0.178 4.178 20 C -0.103 4.103 21 C -0.197 4.197 22 C -0.057 4.057 23 N -0.183 5.183 24 C -0.070 4.070 25 H 0.077 0.923 26 H 0.235 0.765 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.225 0.775 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.097 0.903 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.486 -18.544 1.176 18.640 hybrid contribution -0.173 0.676 -0.919 1.154 sum 1.312 -17.867 0.257 17.917 Atomic orbital electron populations 1.69593 1.05966 1.27377 1.51031 1.25009 0.94985 0.99442 0.93831 0.86461 0.79859 0.82722 0.78158 1.20581 1.21128 1.19764 1.21634 0.93573 0.90754 1.50984 0.92019 1.19707 0.86274 0.91644 0.82836 1.86072 1.51603 1.53270 1.49314 1.23198 1.01632 0.92090 1.00378 1.23049 0.89101 0.96335 0.98904 1.63638 1.25146 1.02329 1.34066 1.22778 1.01119 0.91098 0.94888 1.20855 0.87175 0.86774 0.94564 0.86531 1.86606 1.17067 1.93299 1.38068 1.22215 0.92199 0.97088 0.92226 1.22018 1.00837 0.93560 1.01388 1.21594 0.96765 0.97508 0.94447 1.22151 0.98564 1.00537 0.98479 1.22792 0.96803 0.88048 0.98070 1.67480 1.18716 1.25521 1.06625 1.22841 0.98656 0.91541 0.93945 0.92340 0.76548 0.92005 0.91085 0.94748 0.91312 0.91188 0.93326 0.77504 0.84527 0.84826 0.84883 0.82701 0.90346 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 10.69 55.43 0.59 -23.87 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.53 8.21 -34.44 -0.28 -14.82 16 8 H 0.06 1.67 7.53 -52.49 -0.40 1.28 16 9 C 0.24 6.01 0.85 -89.95 -0.08 5.94 16 10 O -0.59 -15.90 13.09 -35.23 -0.46 -16.36 16 11 C -0.13 -3.21 5.67 -24.59 -0.14 -3.35 16 12 C 0.05 1.10 5.06 -2.30 -0.01 1.09 16 13 N -0.53 -10.50 5.16 -231.25 -1.19 -11.70 16 14 C 0.03 0.52 4.20 -3.82 -0.02 0.51 16 15 C 0.17 2.40 3.48 -27.88 -0.10 2.30 16 16 H 0.12 1.60 7.87 -51.93 -0.41 1.19 16 17 O -0.55 -8.34 10.81 -35.23 -0.38 -8.72 16 18 C 0.10 1.31 5.77 -82.59 -0.48 0.84 16 19 C -0.16 -1.66 9.71 -39.44 -0.38 -2.05 16 20 C -0.08 -0.67 10.18 -39.28 -0.40 -1.07 16 21 C -0.18 -1.52 10.11 -39.44 -0.40 -1.92 16 22 C 0.10 1.05 11.18 -17.55 -0.20 0.86 16 23 N -0.47 -6.33 9.96 -9.47 -0.09 -6.42 16 24 C 0.06 1.29 6.22 -2.83 -0.02 1.28 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 26 H 0.38 10.48 6.98 45.56 0.32 10.80 16 27 H 0.06 1.52 8.04 -51.93 -0.42 1.10 16 28 H 0.07 1.79 7.76 -51.93 -0.40 1.39 16 29 H 0.03 0.71 6.97 -51.93 -0.36 0.35 16 30 H 0.07 1.36 7.60 -51.93 -0.39 0.96 16 31 H 0.07 1.15 8.03 -51.93 -0.42 0.74 16 32 H 0.05 0.92 7.79 -51.93 -0.40 0.51 16 33 H 0.38 5.31 8.67 45.56 0.40 5.71 16 34 H 0.14 1.17 7.95 -52.49 -0.42 0.75 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 37 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.08 1.75 7.63 -51.93 -0.40 1.36 16 39 H 0.04 1.00 7.47 -51.93 -0.39 0.61 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -29.88 319.28 -8.43 -38.32 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -4.09 Total: 16.62 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.59 Total: -8.64 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.70 Total: -41.99 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.84 Total: -25.08 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.88 -8.43 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118500897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.052 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds