Wall clock time and date at job start Tue Mar 31 2020 00:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00186 * 2 1 4 4 H 1.48500 * 109.47140 * 270.00448 * 3 2 1 5 5 H 1.48504 * 109.46863 * 29.99745 * 3 2 1 6 6 H 1.48502 * 109.47413 * 150.00155 * 3 2 1 7 7 C 1.37884 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99676 * 0.02562 * 7 2 1 10 10 O 1.42896 * 110.63101 * 56.89431 * 9 7 2 11 11 C 1.55136 * 110.70586 * 293.59671 * 9 7 2 12 12 C 1.54910 * 101.65131 * 205.96655 * 11 9 7 13 13 N 1.47839 * 104.79725 * 37.07211 * 12 11 9 14 14 C 1.46901 * 111.00094 * 213.63685 * 13 12 11 15 15 C 1.53000 * 109.46769 * 290.84320 * 14 13 12 16 16 H 1.09002 * 109.47069 * 304.99474 * 15 14 13 17 17 O 1.42899 * 109.47405 * 64.99669 * 15 14 13 18 18 C 1.50703 * 109.46801 * 184.99750 * 15 14 13 19 19 C 1.38230 * 119.61522 * 124.99784 * 18 15 14 20 20 C 1.38630 * 119.15900 * 179.97438 * 19 18 15 21 21 C 1.38669 * 118.42129 * 359.97438 * 20 19 18 22 22 C 1.38183 * 119.16261 * 0.02562 * 21 20 19 23 23 N 1.31848 * 119.61988 * 304.72536 * 18 15 14 24 24 C 1.47445 * 108.56660 * 335.90202 * 13 12 11 25 25 H 0.97001 * 120.00275 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00197 * 303.11008 * 10 9 7 27 27 H 1.08999 * 110.99026 * 324.05732 * 11 9 7 28 28 H 1.08998 * 110.99243 * 87.83334 * 11 9 7 29 29 H 1.08995 * 110.37196 * 278.24067 * 12 11 9 30 30 H 1.09005 * 110.37080 * 155.89665 * 12 11 9 31 31 H 1.09002 * 109.47401 * 170.84027 * 14 13 12 32 32 H 1.09001 * 109.46874 * 50.84040 * 14 13 12 33 33 H 0.96702 * 113.99557 * 60.00388 * 17 15 14 34 34 H 1.07998 * 120.42315 * 0.02562 * 19 18 15 35 35 H 1.07999 * 120.78942 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.42009 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.61336 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.88966 * 120.39554 * 24 13 12 39 39 H 1.09002 * 109.88969 * 241.58336 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.3671 -2.5702 -1.1200 11 6 0.4731 -2.6834 1.3301 12 6 0.3727 -4.2265 1.4225 13 7 1.6616 -4.7211 0.8938 14 6 1.4855 -5.9954 0.1844 15 6 1.1361 -7.0946 1.1897 16 1 1.8992 -7.1319 1.9671 17 8 -0.1336 -6.8127 1.7816 18 6 1.0760 -8.4231 0.4807 19 6 1.8492 -9.4752 0.9345 20 6 1.7862 -10.6932 0.2755 21 6 0.9437 -10.8081 -0.8198 22 6 0.2006 -9.7124 -1.2157 23 7 0.2826 -8.5699 -0.5620 24 6 2.2283 -3.6935 0.0011 25 1 -0.4850 0.8400 0.0004 26 1 -0.2677 -1.8423 -1.1671 27 1 1.0356 -2.2777 2.1710 28 1 -0.5163 -2.2301 1.2697 29 1 -0.4530 -4.5903 0.8111 30 1 0.2438 -4.5369 2.4595 31 1 2.4101 -6.2551 -0.3313 32 1 0.6791 -5.8981 -0.5425 33 1 -0.8615 -6.7648 1.1468 34 1 2.4936 -9.3502 1.7921 35 1 2.3792 -11.5326 0.6074 36 1 0.8692 -11.7423 -1.3568 37 1 -0.4576 -9.7937 -2.0681 38 1 3.2022 -3.3754 0.3731 39 1 2.3268 -4.0926 -1.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118500897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:12 Heat of formation + Delta-G solvation = -81.565733 kcal Electronic energy + Delta-G solvation = -21863.875539 eV Core-core repulsion = 18577.294331 eV Total energy + Delta-G solvation = -3286.581208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35892 -40.16688 -38.08767 -36.08973 -34.12588 -33.42780 -33.04358 -31.66248 -29.87146 -28.61976 -26.41122 -24.78457 -24.21908 -22.50452 -21.77400 -21.28824 -19.14632 -18.53369 -17.50999 -17.19342 -16.92387 -16.60853 -16.55935 -15.90531 -15.76877 -15.59403 -15.05506 -14.73771 -14.50136 -13.94247 -13.81755 -13.72902 -13.44652 -13.16782 -13.08689 -12.92848 -12.68989 -12.36381 -12.31830 -12.24347 -12.02481 -11.84031 -11.21660 -11.09314 -10.81275 -10.62484 -10.28399 -10.07522 -9.99110 -9.24451 -8.21829 -6.36950 0.12357 0.37353 1.40992 1.42401 1.52671 2.38798 2.76043 2.98430 3.03485 3.37492 3.55333 3.74966 3.90609 4.00222 4.07714 4.15954 4.24876 4.30586 4.39414 4.42124 4.55447 4.61907 4.66431 4.69090 4.83833 4.94543 4.97143 5.12459 5.25934 5.26701 5.35873 5.49138 5.55453 5.78491 5.80836 5.96193 6.18156 6.22398 6.62351 6.67400 7.03251 7.33658 7.43536 8.83813 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042373 B = 0.003675 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.646167 B = 7618.229610 C = 7647.831156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.057 0.943 9 C 0.220 3.780 10 O -0.600 6.600 11 C -0.128 4.128 12 C 0.070 3.930 13 N -0.522 5.522 14 C 0.037 3.963 15 C 0.175 3.825 16 H 0.126 0.874 17 O -0.556 6.556 18 C 0.075 3.925 19 C -0.162 4.162 20 C -0.076 4.076 21 C -0.166 4.166 22 C 0.081 3.919 23 N -0.508 5.508 24 C 0.064 3.936 25 H 0.270 0.730 26 H 0.377 0.623 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.379 0.621 34 H 0.154 0.846 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.079 0.921 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.022 -20.621 0.865 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.075 0.925 9 C 0.180 3.820 10 O -0.410 6.410 11 C -0.167 4.167 12 C -0.058 4.058 13 N -0.246 5.246 14 C -0.092 4.092 15 C 0.115 3.885 16 H 0.143 0.857 17 O -0.362 6.362 18 C -0.062 4.062 19 C -0.182 4.182 20 C -0.102 4.102 21 C -0.186 4.186 22 C -0.076 4.076 23 N -0.219 5.219 24 C -0.064 4.064 25 H 0.079 0.921 26 H 0.227 0.773 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.228 0.772 34 H 0.172 0.828 35 H 0.186 0.814 36 H 0.185 0.815 37 H 0.189 0.811 38 H 0.097 0.903 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.413 -20.431 1.441 20.624 hybrid contribution -0.483 1.175 -1.054 1.651 sum 1.929 -19.256 0.387 19.357 Atomic orbital electron populations 1.69680 1.06945 1.28206 1.50781 1.25738 0.95857 1.02446 0.93275 0.85479 0.78716 0.78780 0.78160 1.20256 1.20535 1.19372 1.21907 0.93624 0.92110 1.52067 0.92477 1.19967 0.86693 0.92423 0.82946 1.86068 1.51707 1.52955 1.50233 1.23026 1.00026 0.94371 0.99235 1.22892 0.89394 0.93811 0.99684 1.63671 1.24556 1.02681 1.33718 1.22792 1.00663 0.90485 0.95248 1.20745 0.86854 0.86840 0.94038 0.85673 1.86567 1.17563 1.93451 1.38575 1.21956 0.94130 0.96984 0.93167 1.22255 1.00365 0.93623 1.01971 1.22039 0.96572 0.97705 0.93876 1.22547 0.96938 1.01042 0.98064 1.23219 0.97777 0.88037 0.98594 1.67376 1.19669 1.27364 1.07444 1.22722 0.98147 0.91280 0.94235 0.92105 0.77252 0.93098 0.93007 0.94965 0.89935 0.90632 0.95375 0.77208 0.82823 0.81426 0.81534 0.81051 0.90274 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.41 10.69 21.45 0.23 -50.18 16 2 C 0.03 1.45 5.28 84.66 0.45 1.89 16 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.56 -31.03 8.21 25.60 0.21 -30.82 16 8 H 0.06 3.13 7.53 -2.91 -0.02 3.11 16 9 C 0.22 11.44 0.85 -10.36 -0.01 11.43 16 10 O -0.60 -33.05 13.09 -148.98 -1.95 -35.00 16 11 C -0.13 -6.24 5.67 31.98 0.18 -6.05 16 12 C 0.07 2.87 5.06 86.78 0.44 3.31 16 13 N -0.52 -20.74 5.16 -885.53 -4.57 -25.32 16 14 C 0.04 1.27 4.20 86.30 0.36 1.63 16 15 C 0.18 4.93 3.48 29.85 0.10 5.04 16 16 H 0.13 3.26 7.87 -2.39 -0.02 3.24 16 17 O -0.56 -16.80 10.81 -148.98 -1.61 -18.41 16 18 C 0.08 1.88 5.77 42.56 0.25 2.13 16 19 C -0.16 -3.04 9.71 22.36 0.22 -2.82 16 20 C -0.08 -1.06 10.18 22.47 0.23 -0.83 16 21 C -0.17 -2.32 10.11 22.36 0.23 -2.10 16 22 C 0.08 1.57 11.18 84.67 0.95 2.51 16 23 N -0.51 -13.29 9.96 -183.88 -1.83 -15.12 16 24 C 0.06 2.91 6.22 86.65 0.54 3.45 16 25 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 26 H 0.38 21.28 6.98 -74.06 -0.52 20.77 16 27 H 0.05 2.55 8.04 -2.39 -0.02 2.53 16 28 H 0.05 2.69 7.76 -2.39 -0.02 2.67 16 29 H 0.03 1.34 6.97 -2.39 -0.02 1.33 16 30 H 0.08 3.21 7.60 -2.38 -0.02 3.19 16 31 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 32 H 0.03 1.08 7.79 -2.39 -0.02 1.06 16 33 H 0.38 10.83 8.67 -74.06 -0.64 10.19 16 34 H 0.15 2.21 7.95 -2.91 -0.02 2.19 16 35 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 37 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.08 3.56 7.63 -2.39 -0.02 3.55 16 39 H 0.04 1.80 7.47 -2.39 -0.02 1.78 16 Total: -1.00 -64.45 319.28 -3.66 -68.11 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -0.09 Total: 42.04 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 4.14 Total: -11.23 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -6.17 Total: -90.61 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -3.56 Total: -53.41 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.45 -3.66 -68.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118500897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.454 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds