Wall clock time and date at job start Tue Mar 31 2020 00:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48505 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47600 * 299.99980 * 3 2 1 6 6 H 1.48501 * 109.47148 * 60.00260 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00428 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.27156 * 302.09303 * 9 7 2 11 11 C 1.54594 * 110.30989 * 64.28222 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.87684 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53003 * 109.47175 * 52.66416 * 14 13 12 16 16 H 1.08995 * 109.46911 * 59.99977 * 15 14 13 17 17 O 1.42901 * 109.46874 * 299.99936 * 15 14 13 18 18 C 1.50703 * 109.47070 * 179.97438 * 15 14 13 19 19 C 1.38226 * 119.61594 * 125.00342 * 18 15 14 20 20 C 1.38628 * 119.16107 * 179.97438 * 19 18 15 21 21 C 1.38677 * 118.41805 * 359.97438 * 20 19 18 22 22 C 1.38175 * 119.16305 * 0.02562 * 21 20 19 23 23 N 1.31851 * 119.61705 * 304.72671 * 18 15 14 24 24 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 25 25 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 26 26 H 0.96695 * 114.00330 * 57.90701 * 10 9 7 27 27 H 1.08999 * 110.72754 * 259.23584 * 11 9 7 28 28 H 1.08998 * 110.72457 * 22.34151 * 11 9 7 29 29 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 30 30 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 31 31 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 32 32 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 33 33 H 0.96699 * 114.00290 * 299.99906 * 17 15 14 34 34 H 1.08002 * 120.42063 * 359.94820 * 19 18 15 35 35 H 1.07996 * 120.78962 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.41796 * 180.02562 * 21 20 19 37 37 H 1.08005 * 119.61514 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.91668 * 215.45268 * 24 13 12 39 39 H 1.09002 * 109.91761 * 94.35443 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.3862 -2.5726 1.1336 11 6 0.4384 -2.6484 -1.3083 12 6 0.6034 -4.1508 -1.6491 13 7 2.0080 -4.4410 -1.2524 14 6 2.2135 -5.8801 -1.0412 15 6 1.7334 -6.6501 -2.2731 16 1 2.2991 -6.3266 -3.1468 17 8 0.3435 -6.3932 -2.4836 18 6 1.9448 -8.1264 -2.0567 19 6 0.8781 -8.9957 -2.1877 20 6 1.0833 -10.3519 -1.9870 21 6 2.3597 -10.7851 -1.6611 22 6 3.3772 -9.8572 -1.5476 23 7 3.1463 -8.5745 -1.7499 24 6 2.2345 -3.6841 -0.0020 25 1 -0.4851 0.8401 -0.0004 26 1 -0.2555 -1.8513 1.1866 27 1 -0.6104 -2.4039 -1.1404 28 1 0.8573 -2.0231 -2.0967 29 1 -0.0910 -4.7560 -1.0663 30 1 0.4615 -4.3210 -2.7164 31 1 3.2736 -6.0760 -0.8805 32 1 1.6477 -6.2035 -0.1673 33 1 -0.2215 -6.6566 -1.7444 34 1 -0.1029 -8.6229 -2.4427 35 1 0.2687 -11.0544 -2.0830 36 1 2.5560 -11.8346 -1.4982 37 1 4.3740 -10.1865 -1.2937 38 1 3.2599 -3.3156 0.0284 39 1 2.0446 -4.3245 0.8594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118500898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:15 Heat of formation + Delta-G solvation = -50.169825 kcal Electronic energy + Delta-G solvation = -21884.843579 eV Core-core repulsion = 18599.623799 eV Total energy + Delta-G solvation = -3285.219779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.57211 -38.66909 -36.86846 -34.38068 -32.87491 -32.00637 -31.74915 -30.22684 -27.93523 -27.24589 -24.63137 -23.69745 -23.11783 -21.58226 -20.24875 -19.29936 -17.80060 -17.05628 -16.58973 -16.15784 -15.48047 -15.36554 -14.84054 -14.61311 -14.47988 -14.08359 -13.72313 -13.57587 -13.18226 -12.90855 -12.28684 -12.12122 -11.93333 -11.57531 -11.52531 -11.31153 -11.03467 -10.84594 -10.50906 -10.37589 -10.36064 -10.08829 -9.87687 -9.80510 -9.43584 -9.15724 -9.03390 -8.51881 -7.99501 -7.69227 -6.13611 -4.19137 0.88383 1.07409 3.27204 3.35449 3.40731 3.57938 3.94903 4.21935 4.38285 4.59361 4.62230 4.84009 4.89344 4.97939 5.13736 5.20119 5.34011 5.39906 5.52286 5.81754 5.85692 5.95760 6.00001 6.14353 6.22849 6.29703 6.39288 6.47769 6.49773 6.74233 7.02637 7.22103 7.39496 7.49795 7.62770 7.76088 7.79605 7.83992 7.92532 8.24018 8.82616 9.47688 9.59492 10.94055 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042510 B = 0.003721 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.509466 B = 7523.482211 C = 7763.983824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.596 6.596 11 C -0.124 4.124 12 C 0.045 3.955 13 N -0.512 5.512 14 C 0.030 3.970 15 C 0.161 3.839 16 H 0.126 0.874 17 O -0.544 6.544 18 C 0.102 3.898 19 C -0.166 4.166 20 C -0.074 4.074 21 C -0.181 4.181 22 C 0.101 3.899 23 N -0.473 5.473 24 C 0.054 3.946 25 H 0.265 0.735 26 H 0.383 0.617 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.029 0.971 33 H 0.372 0.628 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.156 0.844 38 H 0.077 0.923 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 -18.864 -3.911 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.202 3.798 10 O -0.406 6.406 11 C -0.163 4.163 12 C -0.083 4.083 13 N -0.236 5.236 14 C -0.100 4.100 15 C 0.101 3.899 16 H 0.143 0.857 17 O -0.349 6.349 18 C -0.036 4.036 19 C -0.186 4.186 20 C -0.101 4.101 21 C -0.201 4.201 22 C -0.056 4.056 23 N -0.183 5.183 24 C -0.073 4.073 25 H 0.075 0.925 26 H 0.234 0.766 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.221 0.779 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.174 0.826 38 H 0.095 0.905 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.223 -18.292 -4.687 19.014 hybrid contribution -1.282 0.130 1.001 1.631 sum 0.942 -18.162 -3.687 18.556 Atomic orbital electron populations 1.69635 1.05928 1.27180 1.51352 1.25012 0.94996 0.99431 0.94001 0.86412 0.80194 0.83097 0.77530 1.19670 1.20926 1.20999 1.21765 0.93582 0.90694 1.50409 0.91972 1.19366 0.86271 0.91443 0.82693 1.86072 1.51997 1.53899 1.48667 1.23043 1.00480 0.92613 1.00139 1.23431 0.87514 0.97144 1.00162 1.64919 1.24402 1.04354 1.29971 1.22792 1.02251 0.90090 0.94841 1.20662 0.82847 0.86213 1.00221 0.85690 1.86776 1.16675 1.85124 1.46334 1.22164 0.89126 0.97842 0.94512 1.21962 1.01110 0.93853 1.01698 1.21591 0.97261 0.95738 0.95461 1.22151 0.94217 1.01295 1.02418 1.22791 0.99509 0.88181 0.95143 1.67443 1.22874 1.16822 1.11189 1.22871 1.00540 0.95065 0.88825 0.92489 0.76550 0.91973 0.91641 0.95339 0.90143 0.89264 0.95297 0.77947 0.84077 0.84849 0.84894 0.82648 0.90460 0.94896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 10.88 55.43 0.60 -23.94 16 2 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.53 8.10 -34.44 -0.28 -14.81 16 8 H 0.06 1.72 7.34 -52.48 -0.39 1.34 16 9 C 0.24 6.20 0.99 -90.42 -0.09 6.11 16 10 O -0.60 -15.93 12.93 -35.23 -0.46 -16.39 16 11 C -0.12 -2.96 5.50 -24.87 -0.14 -3.10 16 12 C 0.04 0.89 4.66 -1.74 -0.01 0.88 16 13 N -0.51 -10.18 5.40 -230.20 -1.24 -11.42 16 14 C 0.03 0.49 4.75 -3.82 -0.02 0.47 16 15 C 0.16 2.23 3.55 -27.88 -0.10 2.14 16 16 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 17 O -0.54 -7.23 8.50 -35.23 -0.30 -7.53 16 18 C 0.10 1.29 6.16 -82.59 -0.51 0.78 16 19 C -0.17 -1.73 9.24 -39.44 -0.36 -2.10 16 20 C -0.07 -0.65 10.18 -39.28 -0.40 -1.04 16 21 C -0.18 -1.52 10.11 -39.44 -0.40 -1.91 16 22 C 0.10 1.02 11.18 -17.55 -0.20 0.82 16 23 N -0.47 -6.15 9.89 -9.47 -0.09 -6.24 16 24 C 0.05 1.24 6.16 -2.75 -0.02 1.22 16 25 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.38 10.40 7.05 45.56 0.32 10.72 16 27 H 0.06 1.54 8.06 -51.93 -0.42 1.12 16 28 H 0.06 1.67 7.85 -51.93 -0.41 1.26 16 29 H 0.03 0.54 6.81 -51.93 -0.35 0.19 16 30 H 0.08 1.53 6.86 -51.93 -0.36 1.18 16 31 H 0.09 1.47 7.95 -51.93 -0.41 1.06 16 32 H 0.03 0.48 7.81 -51.92 -0.41 0.08 16 33 H 0.37 4.03 7.60 45.56 0.35 4.38 16 34 H 0.14 1.26 6.73 -52.49 -0.35 0.91 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.08 1.78 7.39 -51.93 -0.38 1.39 16 39 H 0.03 0.74 7.38 -51.93 -0.38 0.36 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -30.16 313.78 -8.41 -38.57 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -4.02 Total: 14.89 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.61 Total: -8.84 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.73 Total: -41.60 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.75 Total: -23.92 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.16 -8.41 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118500898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.599 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds