Wall clock time and date at job start Tue Mar 31 2020 00:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48505 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47600 * 299.99980 * 3 2 1 6 6 H 1.48501 * 109.47148 * 60.00260 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00428 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.27156 * 302.09303 * 9 7 2 11 11 C 1.54594 * 110.30989 * 64.28222 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.87684 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53003 * 109.47175 * 52.66416 * 14 13 12 16 16 H 1.08995 * 109.46911 * 59.99977 * 15 14 13 17 17 O 1.42901 * 109.46874 * 299.99936 * 15 14 13 18 18 C 1.50703 * 109.47070 * 179.97438 * 15 14 13 19 19 C 1.38226 * 119.61594 * 125.00342 * 18 15 14 20 20 C 1.38628 * 119.16107 * 179.97438 * 19 18 15 21 21 C 1.38677 * 118.41805 * 359.97438 * 20 19 18 22 22 C 1.38175 * 119.16305 * 0.02562 * 21 20 19 23 23 N 1.31851 * 119.61705 * 304.72671 * 18 15 14 24 24 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 25 25 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 26 26 H 0.96695 * 114.00330 * 57.90701 * 10 9 7 27 27 H 1.08999 * 110.72754 * 259.23584 * 11 9 7 28 28 H 1.08998 * 110.72457 * 22.34151 * 11 9 7 29 29 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 30 30 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 31 31 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 32 32 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 33 33 H 0.96699 * 114.00290 * 299.99906 * 17 15 14 34 34 H 1.08002 * 120.42063 * 359.94820 * 19 18 15 35 35 H 1.07996 * 120.78962 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.41796 * 180.02562 * 21 20 19 37 37 H 1.08005 * 119.61514 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.91668 * 215.45268 * 24 13 12 39 39 H 1.09002 * 109.91761 * 94.35443 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.3862 -2.5726 1.1336 11 6 0.4384 -2.6484 -1.3083 12 6 0.6034 -4.1508 -1.6491 13 7 2.0080 -4.4410 -1.2524 14 6 2.2135 -5.8801 -1.0412 15 6 1.7334 -6.6501 -2.2731 16 1 2.2991 -6.3266 -3.1468 17 8 0.3435 -6.3932 -2.4836 18 6 1.9448 -8.1264 -2.0567 19 6 0.8781 -8.9957 -2.1877 20 6 1.0833 -10.3519 -1.9870 21 6 2.3597 -10.7851 -1.6611 22 6 3.3772 -9.8572 -1.5476 23 7 3.1463 -8.5745 -1.7499 24 6 2.2345 -3.6841 -0.0020 25 1 -0.4851 0.8401 -0.0004 26 1 -0.2555 -1.8513 1.1866 27 1 -0.6104 -2.4039 -1.1404 28 1 0.8573 -2.0231 -2.0967 29 1 -0.0910 -4.7560 -1.0663 30 1 0.4615 -4.3210 -2.7164 31 1 3.2736 -6.0760 -0.8805 32 1 1.6477 -6.2035 -0.1673 33 1 -0.2215 -6.6566 -1.7444 34 1 -0.1029 -8.6229 -2.4427 35 1 0.2687 -11.0544 -2.0830 36 1 2.5560 -11.8346 -1.4982 37 1 4.3740 -10.1865 -1.2937 38 1 3.2599 -3.3156 0.0284 39 1 2.0446 -4.3245 0.8594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118500898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:15 Heat of formation + Delta-G solvation = -74.419311 kcal Electronic energy + Delta-G solvation = -21885.895115 eV Core-core repulsion = 18599.623799 eV Total energy + Delta-G solvation = -3286.271316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43925 -40.18928 -38.25574 -36.12543 -34.12007 -33.69685 -32.67717 -31.67880 -29.77272 -28.68684 -26.39054 -24.64421 -24.23020 -22.67146 -21.85562 -21.22296 -19.12042 -18.71640 -17.53966 -17.12364 -16.90161 -16.65428 -16.37227 -16.04783 -15.85382 -15.72633 -14.94905 -14.84618 -14.33342 -14.09123 -13.92180 -13.71453 -13.31070 -13.21823 -13.14313 -12.80539 -12.63228 -12.37435 -12.33048 -12.26518 -12.02325 -11.81432 -11.11698 -11.07298 -10.80484 -10.59973 -10.29844 -10.03476 -9.92064 -9.31502 -8.20779 -6.34269 0.13137 0.36684 1.39809 1.42480 1.53958 2.40067 2.77219 2.93453 3.06677 3.14451 3.53239 3.80161 3.96198 3.98149 4.04294 4.12343 4.26488 4.27435 4.38832 4.42414 4.57250 4.58920 4.64392 4.77490 4.83732 4.91282 5.02467 5.12100 5.23012 5.28006 5.38661 5.45502 5.63690 5.77502 5.78448 6.00799 6.15558 6.23391 6.58855 6.69959 7.04737 7.35593 7.45872 8.85462 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042510 B = 0.003721 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.509466 B = 7523.482211 C = 7763.983824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.052 0.948 9 C 0.227 3.773 10 O -0.602 6.602 11 C -0.118 4.118 12 C 0.062 3.938 13 N -0.517 5.517 14 C 0.036 3.964 15 C 0.174 3.826 16 H 0.113 0.887 17 O -0.549 6.549 18 C 0.078 3.922 19 C -0.170 4.170 20 C -0.075 4.075 21 C -0.170 4.170 22 C 0.085 3.915 23 N -0.507 5.507 24 C 0.062 3.938 25 H 0.269 0.731 26 H 0.378 0.622 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.384 0.616 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.177 0.823 38 H 0.068 0.932 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 -20.802 -4.282 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.070 0.930 9 C 0.187 3.813 10 O -0.412 6.412 11 C -0.157 4.157 12 C -0.065 4.065 13 N -0.242 5.242 14 C -0.093 4.093 15 C 0.113 3.887 16 H 0.130 0.870 17 O -0.356 6.356 18 C -0.059 4.059 19 C -0.190 4.190 20 C -0.101 4.101 21 C -0.190 4.190 22 C -0.072 4.072 23 N -0.218 5.218 24 C -0.066 4.066 25 H 0.079 0.921 26 H 0.228 0.772 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.234 0.766 34 H 0.171 0.829 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.194 0.806 38 H 0.087 0.913 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.025 -20.247 -5.059 20.967 hybrid contribution -1.220 0.641 1.135 1.786 sum 0.804 -19.606 -3.923 20.011 Atomic orbital electron populations 1.69707 1.06769 1.28062 1.50949 1.25704 0.95897 1.02291 0.93436 0.85462 0.78847 0.79260 0.77742 1.19724 1.20303 1.20339 1.22004 0.93390 0.92283 1.51695 0.92998 1.19603 0.86750 0.92004 0.82926 1.86063 1.52035 1.53587 1.49481 1.22857 0.98979 0.95158 0.98663 1.23301 0.87808 0.94294 1.01058 1.64865 1.24375 1.06543 1.28425 1.22783 1.02198 0.87910 0.96367 1.20337 0.82858 0.87324 0.98151 0.86964 1.86727 1.16469 1.85360 1.47006 1.21899 0.90065 0.97073 0.96905 1.22138 1.00910 0.94584 1.01358 1.22020 0.98411 0.95448 0.94240 1.22550 0.93536 1.02646 1.00245 1.23259 1.01207 0.87615 0.95165 1.67353 1.23409 1.18653 1.12345 1.22686 0.99265 0.94476 0.90125 0.92146 0.77167 0.93360 0.93913 0.94041 0.88822 0.89640 0.95373 0.76609 0.82929 0.81719 0.81548 0.80635 0.91349 0.95072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.29 10.88 21.45 0.23 -50.06 16 2 C 0.03 1.45 5.26 84.65 0.45 1.89 16 3 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.56 -31.34 8.10 25.60 0.21 -31.13 16 8 H 0.05 2.95 7.34 -2.91 -0.02 2.93 16 9 C 0.23 11.84 0.99 -10.66 -0.01 11.83 16 10 O -0.60 -32.74 12.93 -148.98 -1.93 -34.67 16 11 C -0.12 -5.72 5.50 31.80 0.17 -5.54 16 12 C 0.06 2.45 4.66 86.59 0.40 2.86 16 13 N -0.52 -20.59 5.40 -882.22 -4.77 -25.36 16 14 C 0.04 1.18 4.75 86.30 0.41 1.59 16 15 C 0.17 4.72 3.55 29.85 0.11 4.83 16 16 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 17 O -0.55 -13.81 8.50 -148.98 -1.27 -15.08 16 18 C 0.08 1.89 6.16 42.55 0.26 2.15 16 19 C -0.17 -3.17 9.24 22.36 0.21 -2.96 16 20 C -0.08 -1.05 10.18 22.47 0.23 -0.82 16 21 C -0.17 -2.27 10.11 22.36 0.23 -2.05 16 22 C 0.08 1.54 11.18 84.67 0.95 2.48 16 23 N -0.51 -12.70 9.89 -183.88 -1.82 -14.52 16 24 C 0.06 2.88 6.16 86.44 0.53 3.41 16 25 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 26 H 0.38 20.97 7.05 -74.06 -0.52 20.45 16 27 H 0.05 2.43 8.06 -2.39 -0.02 2.41 16 28 H 0.04 2.22 7.85 -2.39 -0.02 2.20 16 29 H 0.04 1.53 6.81 -2.39 -0.02 1.51 16 30 H 0.09 3.47 6.86 -2.38 -0.02 3.46 16 31 H 0.09 2.84 7.95 -2.39 -0.02 2.82 16 32 H 0.03 0.92 7.81 -2.38 -0.02 0.91 16 33 H 0.38 7.62 7.60 -74.06 -0.56 7.06 16 34 H 0.15 2.36 6.73 -2.91 -0.02 2.34 16 35 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 36 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 37 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.07 3.23 7.39 -2.39 -0.02 3.21 16 39 H 0.03 1.42 7.38 -2.39 -0.02 1.40 16 Total: -1.00 -65.19 313.78 -3.39 -68.58 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.01 Total: 36.86 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 4.14 Total: -11.46 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -6.35 Total: -89.94 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -3.19 Total: -49.75 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -65.19 -3.39 -68.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118500898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.840 kcal (2) G-P(sol) polarization free energy of solvation -65.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds