Wall clock time and date at job start Mon Mar 30 2020 23:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46974 * 2 1 4 4 C 1.53001 * 109.47076 * 119.99754 * 2 1 3 5 5 C 1.50699 * 109.47098 * 295.00326 * 4 2 1 6 6 O 1.20826 * 120.00272 * 0.02562 * 5 4 2 7 7 O 1.34235 * 120.00094 * 179.97438 * 5 4 2 8 8 C 1.45196 * 117.00286 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.46994 * 330.00550 * 8 7 5 10 10 C 1.50694 * 109.47334 * 210.00466 * 8 7 5 11 11 H 1.08004 * 119.99701 * 274.97199 * 10 8 7 12 12 C 1.37880 * 120.00134 * 94.97277 * 10 8 7 13 13 N 1.31514 * 119.99811 * 184.89800 * 12 10 8 14 14 Si 1.86793 * 119.99906 * 4.89715 * 12 10 8 15 15 H 1.48500 * 109.47352 * 84.81541 * 14 12 10 16 16 H 1.48503 * 109.47250 * 204.81088 * 14 12 10 17 17 H 1.48499 * 109.47550 * 324.81145 * 14 12 10 18 18 C 1.50700 * 109.47119 * 89.99992 * 8 7 5 19 19 C 1.34510 * 125.79584 * 215.06959 * 18 8 7 20 20 C 1.41384 * 106.84569 * 179.79388 * 19 18 8 21 21 C 1.34509 * 106.83594 * 0.37240 * 20 19 18 22 22 O 1.34301 * 108.42526 * 359.62179 * 21 20 19 23 23 C 1.52995 * 109.47313 * 239.99873 * 2 1 3 24 24 C 1.52995 * 117.50035 * 128.62130 * 23 2 1 25 25 C 1.52992 * 60.00268 * 252.50958 * 24 23 2 26 26 H 1.08999 * 109.47225 * 300.00419 * 1 2 3 27 27 H 1.09002 * 109.46540 * 60.00392 * 1 2 3 28 28 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47470 * 175.00011 * 4 2 1 30 30 H 1.09003 * 109.46981 * 54.99777 * 4 2 1 31 31 H 0.97003 * 119.99793 * 179.97438 * 13 12 10 32 32 H 1.08007 * 126.57620 * 0.04187 * 19 18 8 33 33 H 1.08000 * 126.58054 * 180.23245 * 20 19 18 34 34 H 1.07999 * 125.78540 * 179.89363 * 21 20 19 35 35 H 1.09005 * 115.54763 * 274.33037 * 23 2 1 36 36 H 1.09003 * 117.49906 * 0.02562 * 24 23 2 37 37 H 1.09003 * 117.50290 * 145.01485 * 24 23 2 38 38 H 1.09000 * 117.49883 * 252.50712 * 25 24 23 39 39 H 1.08997 * 117.49799 * 107.48490 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0132 1.0831 2.3637 7 8 1.9830 -0.3900 3.6953 8 6 1.5659 0.4110 4.8322 9 1 1.5162 1.4598 4.5391 10 6 2.5606 0.2493 5.9526 11 1 2.4721 -0.5812 6.6375 12 6 3.5835 1.1614 6.1035 13 7 4.5067 0.9684 7.0200 14 14 3.6581 2.6710 5.0059 15 1 2.8043 3.7424 5.5790 16 1 5.0610 3.1502 4.9178 17 1 3.1685 2.3209 3.6484 18 6 0.2070 -0.0456 5.2969 19 6 -0.7607 0.7448 5.7952 20 6 -1.8595 -0.0927 6.0954 21 6 -1.4946 -1.3458 5.7704 22 8 -0.2432 -1.3109 5.2842 23 6 2.0401 -0.7212 -1.2492 24 6 3.0742 0.0051 -2.1116 25 6 1.6359 -0.1496 -2.6096 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7995 1.2057 30 1 1.6054 -1.7198 1.2952 31 1 5.2266 1.6099 7.1259 32 1 -0.7096 1.8145 5.9349 33 1 -2.8088 0.2146 6.5088 34 1 -2.1060 -2.2296 5.8778 35 1 2.1268 -1.8045 -1.1641 36 1 3.3915 0.9967 -1.7888 37 1 3.8418 -0.6001 -2.5940 38 1 1.4571 -0.8566 -3.4196 39 1 1.0066 0.7404 -2.6145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123463046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:15 Heat of formation + Delta-G solvation = -60.633310 kcal Electronic energy + Delta-G solvation = -21900.733389 eV Core-core repulsion = 18582.767128 eV Total energy + Delta-G solvation = -3317.966261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.82539 -39.73281 -37.99041 -35.77497 -33.18110 -33.01443 -32.28023 -30.56525 -27.95303 -26.98122 -24.00242 -22.75201 -22.33583 -21.13096 -20.48113 -19.64865 -19.37834 -17.50462 -17.07492 -16.62433 -15.90739 -15.49660 -15.28008 -15.11888 -14.61349 -14.12327 -13.73119 -13.37757 -13.05103 -12.78323 -12.47831 -12.13033 -12.07873 -11.94337 -11.70579 -11.66072 -11.38653 -11.18274 -11.07866 -10.98186 -10.71129 -10.33963 -10.15425 -9.94569 -9.76902 -9.67313 -9.54626 -9.24347 -8.96360 -7.72788 -6.51545 -4.60266 2.44726 2.98060 3.07179 3.18384 3.25150 3.28652 3.57587 3.74692 3.81014 4.09604 4.62085 4.79827 4.87001 4.94277 5.08083 5.32795 5.36824 5.47625 5.53839 5.55983 5.63470 5.70150 5.79781 5.83827 5.90033 5.99949 6.02567 6.04611 6.15597 6.26959 6.44505 6.44796 6.52719 6.58971 6.75980 7.07469 7.14771 7.50080 7.89379 8.06111 8.59978 8.69665 9.05415 10.57257 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.006302 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.163007 B = 4442.086706 C = 5808.955835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 H 0.078 0.922 4 C -0.114 4.114 5 C 0.448 3.552 6 O -0.526 6.526 7 O -0.354 6.354 8 C 0.253 3.747 9 H 0.080 0.920 10 C -0.507 4.507 11 H 0.089 0.911 12 C 0.092 3.908 13 N -0.856 5.856 14 Si 0.869 3.131 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.257 1.257 18 C 0.033 3.967 19 C -0.230 4.230 20 C -0.210 4.210 21 C -0.073 4.073 22 O -0.169 6.169 23 C -0.146 4.146 24 C -0.182 4.182 25 C -0.179 4.179 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.276 0.724 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.193 0.807 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 -2.721 -12.940 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.067 4.067 3 H 0.096 0.904 4 C -0.152 4.152 5 C 0.292 3.708 6 O -0.417 6.417 7 O -0.270 6.270 8 C 0.201 3.799 9 H 0.097 0.903 10 C -0.542 4.542 11 H 0.107 0.893 12 C -0.117 4.117 13 N -0.491 5.491 14 Si 0.693 3.307 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.181 1.181 18 C -0.018 4.018 19 C -0.249 4.249 20 C -0.229 4.229 21 C -0.140 4.140 22 O -0.064 6.064 23 C -0.164 4.164 24 C -0.219 4.219 25 C -0.216 4.216 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.210 0.790 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.254 -2.603 -12.911 14.581 hybrid contribution -0.093 0.933 -0.231 0.966 sum -6.347 -1.669 -13.142 14.690 Atomic orbital electron populations 1.21932 0.94404 1.01561 1.02854 1.20528 0.96489 0.99070 0.90649 0.90364 1.21463 1.03615 1.00028 0.90087 1.23651 0.76250 0.84251 0.86661 1.90529 1.38363 1.25024 1.87752 1.87105 1.70784 1.54821 1.14301 1.19527 0.85844 0.91517 0.82994 0.90257 1.20788 1.10821 1.13736 1.08899 0.89293 1.25118 0.93878 0.98055 0.94665 1.69872 1.11565 1.35757 1.31884 0.86929 0.78437 0.83061 0.82246 1.18953 1.20179 1.18064 1.23361 0.96560 0.80775 1.01146 1.21356 0.93679 1.00688 1.09172 1.21662 1.00419 0.93277 1.07530 1.23819 0.85319 0.99476 1.05399 1.84076 1.27366 1.30275 1.64697 1.22334 1.03471 0.99205 0.91394 1.23033 0.92416 1.02206 1.04250 1.22909 0.98141 1.03326 0.97182 0.90582 0.92995 0.93204 0.88151 0.88275 0.91412 0.84084 0.84225 0.79022 0.87658 0.88780 0.88963 0.89037 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.78 37.16 0.33 -1.75 16 2 C -0.05 -0.67 2.19 -90.62 -0.20 -0.87 16 3 H 0.08 1.19 7.71 -51.93 -0.40 0.79 16 4 C -0.11 -1.76 5.27 -27.88 -0.15 -1.90 16 5 C 0.45 9.37 7.64 36.01 0.28 9.64 16 6 O -0.53 -11.87 13.19 -18.75 -0.25 -12.12 16 7 O -0.35 -8.50 9.84 -42.05 -0.41 -8.91 16 8 C 0.25 6.40 2.06 -29.04 -0.06 6.35 16 9 H 0.08 2.04 4.31 -51.92 -0.22 1.82 16 10 C -0.51 -14.24 9.23 -34.44 -0.32 -14.56 16 11 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 12 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 13 N -0.86 -24.54 13.96 55.43 0.77 -23.77 16 14 Si 0.87 20.81 26.99 -169.99 -4.59 16.23 16 15 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.26 -6.24 6.82 56.52 0.39 -5.85 16 18 C 0.03 0.78 6.18 -35.63 -0.22 0.56 16 19 C -0.23 -4.88 10.81 -39.70 -0.43 -5.31 16 20 C -0.21 -3.75 10.91 -39.70 -0.43 -4.19 16 21 C -0.07 -1.28 12.09 29.41 0.36 -0.93 16 22 O -0.17 -3.72 10.63 2.07 0.02 -3.70 16 23 C -0.15 -1.60 5.15 -90.62 -0.47 -2.07 16 24 C -0.18 -1.84 10.18 -26.74 -0.27 -2.11 16 25 C -0.18 -1.74 9.73 -26.74 -0.26 -2.00 16 26 H 0.08 1.27 5.96 -51.93 -0.31 0.96 16 27 H 0.05 0.63 7.29 -51.93 -0.38 0.25 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.14 2.80 8.06 -52.48 -0.42 2.38 16 33 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 34 H 0.19 2.43 8.06 -52.49 -0.42 2.00 16 35 H 0.11 1.06 8.11 -51.93 -0.42 0.64 16 36 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.92 7.61 -51.93 -0.40 0.53 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -31.05 331.60 -6.90 -37.96 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.50 Total: 6.01 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -1.94 Total: -16.69 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.77 Total: -23.77 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.64 Total: -24.74 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.59 Total: 16.23 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.05 -6.90 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.676 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds