Wall clock time and date at job start Mon Mar 30 2020 23:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46974 * 2 1 4 4 C 1.53001 * 109.47076 * 119.99754 * 2 1 3 5 5 C 1.50699 * 109.47098 * 295.00326 * 4 2 1 6 6 O 1.20826 * 120.00272 * 0.02562 * 5 4 2 7 7 O 1.34235 * 120.00094 * 179.97438 * 5 4 2 8 8 C 1.45196 * 117.00286 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.46994 * 330.00550 * 8 7 5 10 10 C 1.50694 * 109.47334 * 210.00466 * 8 7 5 11 11 H 1.08004 * 119.99701 * 274.97199 * 10 8 7 12 12 C 1.37880 * 120.00134 * 94.97277 * 10 8 7 13 13 N 1.31514 * 119.99811 * 184.89800 * 12 10 8 14 14 Si 1.86793 * 119.99906 * 4.89715 * 12 10 8 15 15 H 1.48500 * 109.47352 * 84.81541 * 14 12 10 16 16 H 1.48503 * 109.47250 * 204.81088 * 14 12 10 17 17 H 1.48499 * 109.47550 * 324.81145 * 14 12 10 18 18 C 1.50700 * 109.47119 * 89.99992 * 8 7 5 19 19 C 1.34510 * 125.79584 * 215.06959 * 18 8 7 20 20 C 1.41384 * 106.84569 * 179.79388 * 19 18 8 21 21 C 1.34509 * 106.83594 * 0.37240 * 20 19 18 22 22 O 1.34301 * 108.42526 * 359.62179 * 21 20 19 23 23 C 1.52995 * 109.47313 * 239.99873 * 2 1 3 24 24 C 1.52995 * 117.50035 * 128.62130 * 23 2 1 25 25 C 1.52992 * 60.00268 * 252.50958 * 24 23 2 26 26 H 1.08999 * 109.47225 * 300.00419 * 1 2 3 27 27 H 1.09002 * 109.46540 * 60.00392 * 1 2 3 28 28 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47470 * 175.00011 * 4 2 1 30 30 H 1.09003 * 109.46981 * 54.99777 * 4 2 1 31 31 H 0.97003 * 119.99793 * 179.97438 * 13 12 10 32 32 H 1.08007 * 126.57620 * 0.04187 * 19 18 8 33 33 H 1.08000 * 126.58054 * 180.23245 * 20 19 18 34 34 H 1.07999 * 125.78540 * 179.89363 * 21 20 19 35 35 H 1.09005 * 115.54763 * 274.33037 * 23 2 1 36 36 H 1.09003 * 117.49906 * 0.02562 * 24 23 2 37 37 H 1.09003 * 117.50290 * 145.01485 * 24 23 2 38 38 H 1.09000 * 117.49883 * 252.50712 * 25 24 23 39 39 H 1.08997 * 117.49799 * 107.48490 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0132 1.0831 2.3637 7 8 1.9830 -0.3900 3.6953 8 6 1.5659 0.4110 4.8322 9 1 1.5162 1.4598 4.5391 10 6 2.5606 0.2493 5.9526 11 1 2.4721 -0.5812 6.6375 12 6 3.5835 1.1614 6.1035 13 7 4.5067 0.9684 7.0200 14 14 3.6581 2.6710 5.0059 15 1 2.8043 3.7424 5.5790 16 1 5.0610 3.1502 4.9178 17 1 3.1685 2.3209 3.6484 18 6 0.2070 -0.0456 5.2969 19 6 -0.7607 0.7448 5.7952 20 6 -1.8595 -0.0927 6.0954 21 6 -1.4946 -1.3458 5.7704 22 8 -0.2432 -1.3109 5.2842 23 6 2.0401 -0.7212 -1.2492 24 6 3.0742 0.0051 -2.1116 25 6 1.6359 -0.1496 -2.6096 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7995 1.2057 30 1 1.6054 -1.7198 1.2952 31 1 5.2266 1.6099 7.1259 32 1 -0.7096 1.8145 5.9349 33 1 -2.8088 0.2146 6.5088 34 1 -2.1060 -2.2296 5.8778 35 1 2.1268 -1.8045 -1.1641 36 1 3.3915 0.9967 -1.7888 37 1 3.8418 -0.6001 -2.5940 38 1 1.4571 -0.8566 -3.4196 39 1 1.0066 0.7404 -2.6145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123463046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:14 Heat of formation + Delta-G solvation = -77.720327 kcal Electronic energy + Delta-G solvation = -21901.474338 eV Core-core repulsion = 18582.767128 eV Total energy + Delta-G solvation = -3318.707210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.42317 -41.38198 -39.04339 -37.48900 -35.20278 -34.20868 -33.90013 -32.33358 -29.29884 -28.70799 -25.34896 -24.40120 -23.09274 -22.67795 -21.97563 -21.09729 -20.66101 -19.54564 -18.69906 -18.31448 -17.48801 -16.88526 -16.77838 -16.50775 -16.26086 -15.42075 -15.26725 -14.77753 -14.58113 -14.16967 -13.96321 -13.69367 -13.63479 -13.50428 -13.32441 -13.08396 -12.89323 -12.44223 -12.33060 -12.12561 -12.05953 -11.88421 -11.79975 -11.49383 -11.32555 -11.12133 -10.99101 -10.80141 -10.78814 -9.33789 -8.63403 -6.78386 0.85676 1.17547 1.21570 1.30575 1.35384 1.71776 1.95043 2.08689 2.24669 2.88318 2.95909 3.66684 3.67450 3.93528 4.00748 4.10079 4.14500 4.19144 4.23830 4.30088 4.40175 4.51073 4.61290 4.67848 4.82146 4.83778 4.91261 4.96193 5.01222 5.05332 5.07130 5.19723 5.21495 5.31048 5.37732 5.44241 5.65594 5.74951 6.01005 6.30221 6.35091 6.90459 6.96743 8.50498 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.006302 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.163007 B = 4442.086706 C = 5808.955835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 H 0.058 0.942 4 C -0.107 4.107 5 C 0.439 3.561 6 O -0.545 6.545 7 O -0.370 6.370 8 C 0.261 3.739 9 H 0.071 0.929 10 C -0.525 4.525 11 H 0.047 0.953 12 C 0.051 3.949 13 N -0.898 5.898 14 Si 0.928 3.072 15 H -0.252 1.252 16 H -0.259 1.259 17 H -0.266 1.266 18 C -0.016 4.016 19 C -0.232 4.232 20 C -0.214 4.214 21 C -0.058 4.058 22 O -0.191 6.191 23 C -0.152 4.152 24 C -0.184 4.184 25 C -0.169 4.169 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.283 0.717 32 H 0.146 0.854 33 H 0.180 0.820 34 H 0.246 0.754 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 -3.190 -14.993 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 H 0.077 0.923 4 C -0.144 4.144 5 C 0.284 3.716 6 O -0.437 6.437 7 O -0.287 6.287 8 C 0.209 3.791 9 H 0.088 0.912 10 C -0.561 4.561 11 H 0.065 0.935 12 C -0.155 4.155 13 N -0.534 5.534 14 Si 0.750 3.250 15 H -0.176 1.176 16 H -0.183 1.183 17 H -0.191 1.191 18 C -0.067 4.067 19 C -0.252 4.252 20 C -0.232 4.232 21 C -0.124 4.124 22 O -0.088 6.088 23 C -0.170 4.170 24 C -0.221 4.221 25 C -0.206 4.206 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.164 0.836 33 H 0.198 0.802 34 H 0.262 0.738 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.665 -3.067 -14.967 17.093 hybrid contribution 0.195 0.984 0.397 1.079 sum -7.470 -2.083 -14.570 16.505 Atomic orbital electron populations 1.21874 0.94512 1.02129 1.01867 1.20472 0.96396 0.98208 0.91205 0.92326 1.21635 1.04719 1.00332 0.87707 1.24700 0.75606 0.84469 0.86788 1.90514 1.39184 1.26145 1.87813 1.86985 1.71526 1.54723 1.15488 1.19118 0.86308 0.91295 0.82414 0.91192 1.20789 1.12345 1.12985 1.09979 0.93470 1.25806 0.93256 1.00562 0.95858 1.69952 1.12543 1.37251 1.33630 0.86020 0.79413 0.79848 0.79751 1.17628 1.18292 1.19120 1.23107 0.96894 0.82089 1.04616 1.21739 0.94414 1.01321 1.07710 1.22090 1.01009 0.92632 1.07515 1.24939 0.83668 1.01482 1.02336 1.84032 1.29503 1.29667 1.65585 1.22238 1.04567 0.99715 0.90489 1.23107 0.93093 1.01913 1.03950 1.22993 0.97626 1.03359 0.96650 0.93992 0.91481 0.91824 0.86631 0.85984 0.90719 0.83602 0.80218 0.73848 0.86114 0.89688 0.87394 0.87141 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.78 71.98 0.63 -3.23 16 2 C -0.04 -1.15 2.19 -10.79 -0.02 -1.18 16 3 H 0.06 1.75 7.71 -2.39 -0.02 1.73 16 4 C -0.11 -3.16 5.27 29.85 0.16 -3.00 16 5 C 0.44 18.54 7.64 71.24 0.54 19.09 16 6 O -0.54 -25.09 13.19 21.96 0.29 -24.80 16 7 O -0.37 -18.33 9.84 -48.80 -0.48 -18.81 16 8 C 0.26 13.72 2.06 29.10 0.06 13.78 16 9 H 0.07 3.73 4.31 -2.38 -0.01 3.72 16 10 C -0.53 -31.05 9.23 25.60 0.24 -30.81 16 11 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 12 C 0.05 2.90 5.47 84.66 0.46 3.36 16 13 N -0.90 -53.25 13.96 21.45 0.30 -52.95 16 14 Si 0.93 43.97 26.99 68.60 1.85 45.82 16 15 H -0.25 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.27 -12.94 6.82 99.48 0.68 -12.26 16 18 C -0.02 -0.79 6.18 24.83 0.15 -0.64 16 19 C -0.23 -9.85 10.81 22.19 0.24 -9.61 16 20 C -0.21 -7.14 10.91 22.19 0.24 -6.90 16 21 C -0.06 -1.90 12.09 66.97 0.81 -1.09 16 22 O -0.19 -8.45 10.63 0.95 0.01 -8.44 16 23 C -0.15 -2.93 5.15 -10.80 -0.06 -2.99 16 24 C -0.18 -3.26 10.18 30.59 0.31 -2.95 16 25 C -0.17 -2.80 9.73 30.59 0.30 -2.50 16 26 H 0.04 1.39 5.96 -2.39 -0.01 1.38 16 27 H 0.07 1.52 7.29 -2.39 -0.02 1.50 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.15 5.83 8.06 -2.91 -0.02 5.81 16 33 H 0.18 4.43 8.06 -2.91 -0.02 4.40 16 34 H 0.25 5.04 8.06 -2.91 -0.02 5.02 16 35 H 0.12 2.00 8.11 -2.38 -0.02 1.98 16 36 H 0.08 1.66 8.05 -2.39 -0.02 1.64 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.56 7.61 -2.39 -0.02 1.54 16 Total: -1.00 -71.60 331.60 7.05 -64.55 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 1.01 Total: 23.29 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.07 Total: -28.66 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.30 Total: -52.95 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.18 Total: -52.04 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.85 Total: 45.82 kcal Total: -71.60 7.05 -64.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.175 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds