Wall clock time and date at job start Tue Mar 31 2020 00:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86806 * 120.00315 * 2 1 4 4 H 1.48493 * 109.47271 * 240.00246 * 3 2 1 5 5 H 1.48499 * 109.46559 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47010 * 119.99466 * 3 2 1 7 7 C 1.38812 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00226 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00079 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00244 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46941 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.34768 * 119.99778 * 179.97438 * 12 11 10 14 14 O 1.21285 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99883 * 180.02562 * 13 12 11 16 16 O 1.42903 * 109.47122 * 180.02562 * 15 13 12 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.97001 * 119.99895 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99257 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47260 * 59.99991 * 10 9 7 27 27 H 1.09001 * 109.46919 * 300.00175 * 10 9 7 28 28 H 1.08989 * 109.47228 * 60.00172 * 11 10 9 29 29 H 1.09001 * 109.47015 * 299.99575 * 11 10 9 30 30 H 0.97003 * 119.99766 * 359.97438 * 12 11 10 31 31 H 1.09005 * 109.47119 * 60.00082 * 15 13 12 32 32 H 1.08993 * 109.47044 * 300.00277 * 15 13 12 33 33 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 34 34 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 7 1.7963 -6.0885 -0.0006 13 6 1.1224 -7.2556 -0.0005 14 8 -0.0905 -7.2556 -0.0013 15 6 1.8759 -8.5607 0.0008 16 8 0.9473 -9.6469 0.0000 17 6 1.5619 -10.9369 0.0017 18 6 0.4951 -12.0015 0.0014 19 6 0.0072 -12.4907 -1.1959 20 6 -0.9708 -13.4676 -1.1962 21 6 -1.4605 -13.9557 0.0008 22 6 -0.9764 -13.4628 1.1981 23 6 0.0050 -12.4892 1.1984 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.6846 -3.7146 0.8894 27 1 2.6847 -3.7145 -0.8905 28 1 0.4375 -4.7618 -0.8913 29 1 0.4368 -4.7622 0.8886 30 1 2.7663 -6.0884 -0.0002 31 1 2.5019 -8.6180 0.8913 32 1 2.5032 -8.6189 -0.8887 33 1 2.1807 -11.0436 0.8927 34 1 2.1832 -11.0445 -0.8874 35 1 0.3901 -12.1096 -2.1312 36 1 -1.3523 -13.8495 -2.1316 37 1 -2.2244 -14.7193 0.0005 38 1 -1.3621 -13.8410 2.1333 39 1 0.3867 -12.1076 2.1338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150747570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:43 Heat of formation + Delta-G solvation = -43.735938 kcal Electronic energy + Delta-G solvation = -19761.292386 eV Core-core repulsion = 16476.351601 eV Total energy + Delta-G solvation = -3284.940785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86643 -39.39881 -37.54780 -35.62818 -33.83829 -32.36981 -31.29794 -31.18902 -29.05288 -27.11116 -25.77531 -23.48244 -22.87874 -21.65525 -21.49158 -20.47797 -17.61546 -17.37957 -16.86985 -16.68984 -16.59977 -15.54990 -15.44511 -15.25623 -14.72701 -14.53986 -14.11900 -13.75775 -13.58214 -13.30841 -13.18489 -12.99916 -12.84604 -12.38834 -12.21890 -11.42346 -11.32307 -11.27592 -11.11188 -10.83161 -10.80062 -10.15695 -10.00864 -9.85626 -9.66382 -9.19753 -9.12908 -8.99420 -8.83804 -7.00152 -5.79685 -3.10713 0.95306 1.12532 2.68824 2.78640 3.42531 3.45236 3.47783 3.48960 3.98998 4.49010 4.51012 4.58689 4.71317 4.73323 4.84016 4.88522 4.90153 5.01019 5.01563 5.22980 5.34832 5.49718 5.51746 5.66385 5.74397 5.77548 5.95393 6.14263 6.14704 6.21441 6.28809 6.46480 6.66090 6.69478 6.69703 6.80703 7.59134 7.64824 8.31535 8.37953 9.48909 10.03730 10.38346 11.42766 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.055896 B = 0.002092 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.814349 B =13381.400940 C =13561.822207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.112 3.888 12 N -0.723 5.723 13 C 0.509 3.491 14 O -0.519 6.519 15 C 0.044 3.956 16 O -0.355 6.355 17 C 0.101 3.899 18 C -0.090 4.090 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.097 4.097 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.400 0.600 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.773 -29.143 0.008 29.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.011 4.011 12 N -0.376 5.376 13 C 0.293 3.707 14 O -0.394 6.394 15 C -0.036 4.036 16 O -0.274 6.274 17 C 0.024 3.976 18 C -0.090 4.090 19 C -0.115 4.115 20 C -0.142 4.142 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.115 4.115 24 H 0.067 0.933 25 H 0.220 0.780 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.233 0.767 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.786 -28.978 0.007 29.224 hybrid contribution 0.916 0.942 0.001 1.314 sum 4.702 -28.035 0.008 28.427 Atomic orbital electron populations 1.69655 1.05155 1.25992 1.57017 1.24792 0.95578 0.97849 1.02633 0.86213 0.78483 0.83279 0.77843 1.21194 1.21603 1.21189 1.19145 0.91001 0.83858 1.43655 0.91068 1.42186 1.06029 0.99547 1.89719 1.20752 0.93468 0.85666 0.98421 1.21589 0.95446 0.81360 1.02707 1.45808 1.10407 1.05730 1.75674 1.20154 0.88374 0.84830 0.77304 1.90756 1.13737 1.87272 1.47641 1.22227 0.92192 0.86559 1.02616 1.88120 1.31483 1.12360 1.95414 1.21381 0.93257 0.81827 1.01118 1.19556 0.98823 0.96943 0.93702 1.21090 0.96486 0.96314 0.97576 1.21159 0.97321 0.97493 0.98267 1.21215 0.99593 0.99823 0.92648 1.21160 0.97304 0.97504 0.98267 1.21088 0.96445 0.96352 0.97581 0.93281 0.77971 0.95774 0.95781 0.91189 0.91198 0.76662 0.90183 0.90191 0.92146 0.92140 0.85855 0.85864 0.86006 0.85862 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.61 5.60 -59.91 -0.34 -18.95 16 10 C 0.15 2.82 6.37 -4.04 -0.03 2.80 16 11 C 0.11 1.95 5.79 -4.04 -0.02 1.92 16 12 N -0.72 -9.69 5.56 -60.29 -0.33 -10.03 16 13 C 0.51 7.48 7.91 -10.99 -0.09 7.39 16 14 O -0.52 -10.38 16.50 -14.36 -0.24 -10.61 16 15 C 0.04 0.45 6.42 36.01 0.23 0.68 16 16 O -0.36 -4.48 9.86 -55.14 -0.54 -5.02 16 17 C 0.10 0.88 6.06 36.01 0.22 1.10 16 18 C -0.09 -0.88 5.51 -104.62 -0.58 -1.46 16 19 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 20 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 21 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.39 10.47 7.67 -40.82 -0.31 10.15 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.31 8.14 -51.94 -0.42 0.89 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.40 3.92 8.47 -40.82 -0.35 3.57 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -35.83 342.13 -8.76 -44.59 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.70 Total: 6.98 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.47 Total: -1.75 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.05 Total: -56.62 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.78 Total: -15.64 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.83 -8.76 -44.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150747570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.855 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds