Wall clock time and date at job start Tue Mar 31 2020 00:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86806 * 120.00315 * 2 1 4 4 H 1.48493 * 109.47271 * 240.00246 * 3 2 1 5 5 H 1.48499 * 109.46559 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47010 * 119.99466 * 3 2 1 7 7 C 1.38812 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00226 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00079 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00244 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46941 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.34768 * 119.99778 * 179.97438 * 12 11 10 14 14 O 1.21285 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99883 * 180.02562 * 13 12 11 16 16 O 1.42903 * 109.47122 * 180.02562 * 15 13 12 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.97001 * 119.99895 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99257 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47260 * 59.99991 * 10 9 7 27 27 H 1.09001 * 109.46919 * 300.00175 * 10 9 7 28 28 H 1.08989 * 109.47228 * 60.00172 * 11 10 9 29 29 H 1.09001 * 109.47015 * 299.99575 * 11 10 9 30 30 H 0.97003 * 119.99766 * 359.97438 * 12 11 10 31 31 H 1.09005 * 109.47119 * 60.00082 * 15 13 12 32 32 H 1.08993 * 109.47044 * 300.00277 * 15 13 12 33 33 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 34 34 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 7 1.7963 -6.0885 -0.0006 13 6 1.1224 -7.2556 -0.0005 14 8 -0.0905 -7.2556 -0.0013 15 6 1.8759 -8.5607 0.0008 16 8 0.9473 -9.6469 0.0000 17 6 1.5619 -10.9369 0.0017 18 6 0.4951 -12.0015 0.0014 19 6 0.0072 -12.4907 -1.1959 20 6 -0.9708 -13.4676 -1.1962 21 6 -1.4605 -13.9557 0.0008 22 6 -0.9764 -13.4628 1.1981 23 6 0.0050 -12.4892 1.1984 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.6846 -3.7146 0.8894 27 1 2.6847 -3.7145 -0.8905 28 1 0.4375 -4.7618 -0.8913 29 1 0.4368 -4.7622 0.8886 30 1 2.7663 -6.0884 -0.0002 31 1 2.5019 -8.6180 0.8913 32 1 2.5032 -8.6189 -0.8887 33 1 2.1807 -11.0436 0.8927 34 1 2.1832 -11.0445 -0.8874 35 1 0.3901 -12.1096 -2.1312 36 1 -1.3523 -13.8495 -2.1316 37 1 -2.2244 -14.7193 0.0005 38 1 -1.3621 -13.8410 2.1333 39 1 0.3867 -12.1076 2.1338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150747570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:42 Heat of formation + Delta-G solvation = -68.886803 kcal Electronic energy + Delta-G solvation = -19762.383010 eV Core-core repulsion = 16476.351601 eV Total energy + Delta-G solvation = -3286.031409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88168 -40.17496 -38.39161 -37.24865 -35.50351 -33.26817 -32.93386 -31.79554 -30.36893 -28.36813 -26.59387 -25.34132 -23.49147 -23.09738 -22.28501 -21.66043 -19.34827 -18.45892 -17.79607 -17.57085 -17.41025 -16.76731 -16.47038 -16.32244 -16.12345 -15.72444 -15.34245 -15.05715 -14.84764 -14.69206 -14.27225 -14.07384 -13.64993 -13.23802 -13.04225 -12.94530 -12.93216 -12.61767 -12.53879 -12.12200 -11.92282 -11.88366 -11.85343 -10.97735 -10.95245 -10.71493 -10.17661 -9.82706 -9.76973 -9.06759 -7.96535 -5.28280 0.31451 0.49508 1.48507 1.52593 1.56032 1.58645 1.80428 2.56037 2.75104 3.25620 3.37475 3.69411 3.92069 3.95657 4.02443 4.14836 4.16309 4.19315 4.24687 4.29229 4.30474 4.40162 4.44487 4.58349 4.64167 4.76921 5.02024 5.07708 5.13487 5.14782 5.34883 5.48821 5.53796 5.60286 5.65440 6.03834 6.10672 6.23913 6.55673 7.22616 7.29955 8.02190 8.24718 9.26968 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.055896 B = 0.002092 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.814349 B =13381.400940 C =13561.822207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.981 3.019 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.085 0.915 9 N -0.749 5.749 10 C 0.150 3.850 11 C 0.128 3.872 12 N -0.706 5.706 13 C 0.504 3.496 14 O -0.582 6.582 15 C 0.051 3.949 16 O -0.395 6.395 17 C 0.099 3.901 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.114 4.114 24 H 0.252 0.748 25 H 0.373 0.627 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.421 0.579 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.136 -30.290 0.009 31.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.381 4.381 8 H 0.103 0.897 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.003 3.997 12 N -0.361 5.361 13 C 0.291 3.709 14 O -0.461 6.461 15 C -0.028 4.028 16 O -0.315 6.315 17 C 0.024 3.976 18 C -0.112 4.112 19 C -0.132 4.132 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.152 4.152 23 C -0.132 4.132 24 H 0.061 0.939 25 H 0.205 0.795 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.259 0.741 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.249 -30.171 0.008 30.812 hybrid contribution 0.194 1.176 0.000 1.192 sum 6.442 -28.995 0.009 29.702 Atomic orbital electron populations 1.69835 1.06888 1.26370 1.59084 1.25713 0.96462 1.01606 1.03374 0.85100 0.77068 0.78504 0.78380 1.20053 1.22406 1.20043 1.19634 0.91787 0.84816 1.41814 0.89723 1.42446 1.05763 1.01181 1.89822 1.20856 0.93496 0.83865 0.99490 1.21139 0.94891 0.82691 1.00963 1.45568 1.11340 1.04211 1.74947 1.21125 0.87913 0.86403 0.75424 1.90732 1.16666 1.88177 1.50493 1.22325 0.91253 0.83223 1.05987 1.88065 1.33573 1.14001 1.95842 1.21559 0.93109 0.79909 1.03036 1.19857 0.99657 0.97608 0.94058 1.21348 0.97041 0.96851 0.97957 1.21478 0.97115 0.97312 0.99334 1.21553 0.99891 1.00150 0.92459 1.21479 0.97104 0.97323 0.99334 1.21347 0.96999 0.96887 0.97962 0.93918 0.79549 0.94168 0.94177 0.93084 0.93094 0.74102 0.86566 0.86576 0.90153 0.90144 0.85058 0.84102 0.83896 0.84103 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -38.20 5.60 -343.46 -1.92 -40.12 16 10 C 0.15 5.62 6.37 86.38 0.55 6.17 16 11 C 0.13 4.42 5.79 86.38 0.50 4.92 16 12 N -0.71 -17.72 5.56 -463.06 -2.57 -20.29 16 13 C 0.50 14.23 7.91 87.66 0.69 14.93 16 14 O -0.58 -23.71 16.50 15.99 0.26 -23.44 16 15 C 0.05 0.88 6.42 71.24 0.46 1.34 16 16 O -0.40 -9.37 9.86 -129.94 -1.28 -10.65 16 17 C 0.10 1.54 6.06 71.24 0.43 1.98 16 18 C -0.11 -2.10 5.51 -19.86 -0.11 -2.21 16 19 C -0.11 -2.03 9.70 22.27 0.22 -1.82 16 20 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 21 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 22 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 23 C -0.11 -2.03 9.70 22.27 0.22 -1.82 16 24 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 25 H 0.37 20.73 7.67 -92.71 -0.71 20.02 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.42 6.91 8.47 -92.71 -0.79 6.12 16 31 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 0.88 8.08 -2.38 -0.02 0.86 16 34 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -79.43 342.13 1.29 -78.14 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.44 Total: 27.62 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 4.93 Total: 1.08 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -4.21 Total: -120.47 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.02 Total: -34.10 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -79.43 1.29 -78.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150747570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.256 kcal (2) G-P(sol) polarization free energy of solvation -79.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds