Wall clock time and date at job start Mon Mar 30 2020 23:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48496 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47322 * 300.00220 * 3 2 1 6 6 H 1.48494 * 109.47409 * 60.00426 * 3 2 1 7 7 C 1.38813 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00144 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99643 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99556 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47410 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47414 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00281 * 179.97438 * 13 12 11 15 15 O 1.21694 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.46656 * 120.00352 * 179.97438 * 14 13 12 17 17 O 1.34942 * 126.00333 * 0.04896 * 16 14 13 18 18 C 1.33954 * 109.37664 * 179.97438 * 17 16 14 19 19 C 1.35145 * 108.75142 * 0.02562 * 18 17 16 20 20 C 1.36469 * 126.00852 * 179.97438 * 16 14 13 21 21 C 1.51072 * 143.67076 * 0.04686 * 20 16 14 22 22 C 1.54377 * 105.24220 * 197.15463 * 21 20 16 23 23 C 1.51140 * 143.44130 * 179.97438 * 19 18 17 24 24 H 0.97007 * 120.00008 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00391 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47185 * 60.00263 * 10 9 7 27 27 H 1.09005 * 109.47309 * 299.99852 * 10 9 7 28 28 H 1.08996 * 109.47099 * 59.99238 * 11 10 9 29 29 H 1.09005 * 109.46789 * 299.99987 * 11 10 9 30 30 H 1.09008 * 109.47127 * 59.99441 * 12 11 10 31 31 H 1.08996 * 109.47391 * 300.00114 * 12 11 10 32 32 H 0.97004 * 119.99803 * 359.97438 * 13 12 11 33 33 H 1.07994 * 125.62301 * 180.25735 * 18 17 16 34 34 H 1.09003 * 110.29018 * 316.09506 * 21 20 16 35 35 H 1.09002 * 110.29614 * 78.11070 * 21 20 16 36 36 H 1.08995 * 110.76343 * 91.85657 * 22 21 20 37 37 H 1.09000 * 110.75791 * 215.04954 * 22 21 20 38 38 H 1.09000 * 110.29225 * 281.80118 * 23 19 18 39 39 H 1.08998 * 110.29123 * 43.90858 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.8286 -6.1447 -0.0018 13 7 0.8767 -7.2582 -0.0018 14 6 1.3258 -8.5289 -0.0029 15 8 2.5223 -8.7513 -0.0033 16 6 0.3729 -9.6436 -0.0023 17 8 -0.9724 -9.5372 -0.0017 18 6 -1.5151 -10.7619 -0.0019 19 6 -0.5211 -11.6775 -0.0020 20 6 0.6906 -10.9708 -0.0037 21 6 1.8444 -11.9461 -0.0054 22 6 1.2353 -13.2946 -0.4455 23 6 -0.2382 -13.1622 -0.0018 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.6846 -3.7145 0.8895 27 1 2.6846 -3.7146 -0.8906 28 1 0.4373 -4.7617 -0.8913 29 1 0.4367 -4.7622 0.8886 30 1 2.4553 -6.2029 0.8882 31 1 2.4553 -6.2021 -0.8918 32 1 -0.0770 -7.0809 -0.0011 33 1 -2.5725 -10.9813 -0.0055 34 1 2.6081 -11.6268 -0.7146 35 1 2.2697 -12.0302 0.9947 36 1 1.3058 -13.4160 -1.5264 37 1 1.7220 -14.1241 0.0675 38 1 -0.3725 -13.5725 0.9990 39 1 -0.8912 -13.6715 -0.7105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163329781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:56 Heat of formation + Delta-G solvation = -16.006084 kcal Electronic energy + Delta-G solvation = -20336.284348 eV Core-core repulsion = 17052.546019 eV Total energy + Delta-G solvation = -3283.738328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.13663 -39.48372 -37.62963 -36.05989 -34.37419 -32.07308 -30.98083 -30.77888 -29.52286 -27.47564 -25.36675 -23.58055 -22.60889 -21.71487 -21.19622 -20.53679 -19.70947 -17.84867 -16.99265 -16.81914 -16.18028 -15.98555 -15.60650 -15.31293 -14.65315 -14.34548 -14.19265 -14.10821 -13.37659 -13.27921 -13.08800 -12.97001 -12.45593 -12.07922 -11.95928 -11.66198 -11.54885 -11.51402 -10.98568 -10.93532 -10.81554 -10.63401 -10.32305 -10.01124 -9.71508 -9.58099 -9.21789 -8.88472 -8.77459 -6.93415 -5.77169 -3.06127 0.84129 2.00432 2.44995 3.04453 3.15336 3.43886 3.49587 3.51920 3.70144 4.39059 4.47135 4.59166 4.66060 4.76847 4.82553 5.07813 5.23662 5.29457 5.32284 5.38486 5.50893 5.57503 5.60052 5.61487 5.73593 5.79701 5.86198 5.94205 6.04740 6.06264 6.18027 6.31566 6.33384 6.58701 6.78664 6.82861 7.38842 7.70866 7.99357 8.41754 9.52943 10.10035 10.44687 11.45916 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.052845 B = 0.002410 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.727690 B =11616.820841 C =12096.939554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.716 5.716 14 C 0.600 3.400 15 O -0.521 6.521 16 C -0.062 4.062 17 O -0.156 6.156 18 C 0.010 3.990 19 C -0.220 4.220 20 C -0.108 4.108 21 C -0.055 4.055 22 C -0.119 4.119 23 C -0.046 4.046 24 H 0.255 0.745 25 H 0.384 0.616 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.406 0.594 33 H 0.210 0.790 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 -28.693 -0.117 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.177 4.177 12 C -0.001 4.001 13 N -0.366 5.366 14 C 0.386 3.614 15 O -0.399 6.399 16 C -0.113 4.113 17 O -0.052 6.052 18 C -0.059 4.059 19 C -0.221 4.221 20 C -0.111 4.111 21 C -0.092 4.092 22 C -0.157 4.157 23 C -0.083 4.083 24 H 0.064 0.936 25 H 0.217 0.783 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.241 0.759 33 H 0.227 0.773 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.198 -28.412 -0.119 28.497 hybrid contribution -0.545 0.984 0.019 1.125 sum -2.743 -27.428 -0.101 27.565 Atomic orbital electron populations 1.69672 1.05140 1.25569 1.57924 1.24764 0.95574 0.97793 1.03039 0.86087 0.78806 0.83964 0.77178 1.20499 1.21847 1.21844 1.19294 0.91141 0.84089 1.42488 0.91010 1.42350 1.05893 0.99998 1.89601 1.20520 0.93229 0.85137 0.98268 1.21956 0.99633 0.93164 1.02913 1.21449 0.91595 0.84289 1.02810 1.45997 1.11312 1.05334 1.73990 1.16531 0.86361 0.81242 0.77260 1.90875 1.14117 1.84042 1.50831 1.21215 0.80902 0.94464 1.14758 1.84195 1.18794 1.30910 1.71268 1.23372 0.98666 0.80365 1.03538 1.21345 0.93203 0.98169 1.09421 1.21212 0.98093 0.91505 1.00258 1.20565 0.94705 0.91109 1.02828 1.22405 0.94550 0.96998 1.01713 1.20452 0.96762 0.89141 1.01971 0.93554 0.78285 0.95975 0.95984 0.91167 0.91163 0.90945 0.90937 0.75938 0.77304 0.89890 0.89684 0.90770 0.90146 0.90240 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -18.86 5.60 -59.90 -0.34 -19.19 16 10 C 0.16 3.15 6.26 -4.04 -0.03 3.12 16 11 C -0.14 -2.16 5.44 -26.73 -0.15 -2.30 16 12 C 0.12 1.70 5.67 -4.05 -0.02 1.68 16 13 N -0.72 -9.23 5.55 -61.63 -0.34 -9.57 16 14 C 0.60 8.61 7.79 -12.86 -0.10 8.51 16 15 O -0.52 -8.89 16.87 5.19 0.09 -8.80 16 16 C -0.06 -0.78 7.13 -36.82 -0.26 -1.04 16 17 O -0.16 -1.69 10.40 4.85 0.05 -1.64 16 18 C 0.01 0.08 12.08 29.63 0.36 0.44 16 19 C -0.22 -2.01 6.93 -104.74 -0.73 -2.74 16 20 C -0.11 -1.24 6.66 -104.31 -0.69 -1.93 16 21 C -0.06 -0.52 6.76 -26.98 -0.18 -0.70 16 22 C -0.12 -0.77 7.06 -25.25 -0.18 -0.95 16 23 C -0.05 -0.30 6.76 -26.91 -0.18 -0.48 16 24 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.38 10.25 7.67 -40.82 -0.31 9.93 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.41 4.48 8.23 -40.82 -0.34 4.14 16 33 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -33.93 334.17 -7.90 -41.83 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.69 Total: 6.42 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -2.41 Total: -3.90 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.05 Total: -56.55 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.14 Total: -10.44 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.93 -7.90 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163329781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.822 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds