Wall clock time and date at job start Mon Mar 30 2020 23:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48496 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47322 * 300.00220 * 3 2 1 6 6 H 1.48494 * 109.47409 * 60.00426 * 3 2 1 7 7 C 1.38813 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00144 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99643 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99556 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47410 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47414 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00281 * 179.97438 * 13 12 11 15 15 O 1.21694 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.46656 * 120.00352 * 179.97438 * 14 13 12 17 17 O 1.34942 * 126.00333 * 0.04896 * 16 14 13 18 18 C 1.33954 * 109.37664 * 179.97438 * 17 16 14 19 19 C 1.35145 * 108.75142 * 0.02562 * 18 17 16 20 20 C 1.36469 * 126.00852 * 179.97438 * 16 14 13 21 21 C 1.51072 * 143.67076 * 0.04686 * 20 16 14 22 22 C 1.54377 * 105.24220 * 197.15463 * 21 20 16 23 23 C 1.51140 * 143.44130 * 179.97438 * 19 18 17 24 24 H 0.97007 * 120.00008 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00391 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47185 * 60.00263 * 10 9 7 27 27 H 1.09005 * 109.47309 * 299.99852 * 10 9 7 28 28 H 1.08996 * 109.47099 * 59.99238 * 11 10 9 29 29 H 1.09005 * 109.46789 * 299.99987 * 11 10 9 30 30 H 1.09008 * 109.47127 * 59.99441 * 12 11 10 31 31 H 1.08996 * 109.47391 * 300.00114 * 12 11 10 32 32 H 0.97004 * 119.99803 * 359.97438 * 13 12 11 33 33 H 1.07994 * 125.62301 * 180.25735 * 18 17 16 34 34 H 1.09003 * 110.29018 * 316.09506 * 21 20 16 35 35 H 1.09002 * 110.29614 * 78.11070 * 21 20 16 36 36 H 1.08995 * 110.76343 * 91.85657 * 22 21 20 37 37 H 1.09000 * 110.75791 * 215.04954 * 22 21 20 38 38 H 1.09000 * 110.29225 * 281.80118 * 23 19 18 39 39 H 1.08998 * 110.29123 * 43.90858 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.8286 -6.1447 -0.0018 13 7 0.8767 -7.2582 -0.0018 14 6 1.3258 -8.5289 -0.0029 15 8 2.5223 -8.7513 -0.0033 16 6 0.3729 -9.6436 -0.0023 17 8 -0.9724 -9.5372 -0.0017 18 6 -1.5151 -10.7619 -0.0019 19 6 -0.5211 -11.6775 -0.0020 20 6 0.6906 -10.9708 -0.0037 21 6 1.8444 -11.9461 -0.0054 22 6 1.2353 -13.2946 -0.4455 23 6 -0.2382 -13.1622 -0.0018 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.6846 -3.7145 0.8895 27 1 2.6846 -3.7146 -0.8906 28 1 0.4373 -4.7617 -0.8913 29 1 0.4367 -4.7622 0.8886 30 1 2.4553 -6.2029 0.8882 31 1 2.4553 -6.2021 -0.8918 32 1 -0.0770 -7.0809 -0.0011 33 1 -2.5725 -10.9813 -0.0055 34 1 2.6081 -11.6268 -0.7146 35 1 2.2697 -12.0302 0.9947 36 1 1.3058 -13.4160 -1.5264 37 1 1.7220 -14.1241 0.0675 38 1 -0.3725 -13.5725 0.9990 39 1 -0.8912 -13.6715 -0.7105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163329781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:55 Heat of formation + Delta-G solvation = -39.308261 kcal Electronic energy + Delta-G solvation = -20337.294806 eV Core-core repulsion = 17052.546019 eV Total energy + Delta-G solvation = -3284.748787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.89509 -40.60642 -38.28680 -37.54941 -35.98191 -33.82318 -31.92664 -31.61949 -30.94679 -28.30655 -26.90400 -24.91739 -23.79805 -22.65060 -22.61569 -21.29722 -20.69040 -19.21067 -18.55748 -17.64975 -17.28988 -16.92001 -16.73424 -16.49459 -15.98409 -15.45321 -15.39608 -15.32711 -15.00106 -14.73529 -14.01404 -13.90605 -13.66210 -13.33822 -12.85631 -12.69192 -12.67900 -12.59698 -12.47256 -12.11118 -12.08780 -12.06889 -12.05178 -11.82403 -11.44284 -10.96873 -10.40054 -10.21852 -9.57262 -9.03343 -7.97700 -5.27126 -0.03323 1.29483 1.47343 1.48164 1.58485 1.60937 2.01481 2.17629 2.55483 3.03094 3.36303 3.66662 3.71783 3.82387 4.04136 4.11644 4.15337 4.18475 4.24752 4.40561 4.53359 4.67830 4.69165 4.78222 4.81473 4.83554 4.94157 5.00418 5.08486 5.17191 5.18608 5.28577 5.29432 5.32319 5.42432 5.48267 5.78655 6.25085 6.37382 6.93380 7.31377 8.05770 8.29554 9.26100 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.052845 B = 0.002410 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.727690 B =11616.820841 C =12096.939554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.748 5.748 10 C 0.153 3.847 11 C -0.119 4.119 12 C 0.133 3.867 13 N -0.708 5.708 14 C 0.599 3.401 15 O -0.559 6.559 16 C -0.099 4.099 17 O -0.163 6.163 18 C 0.025 3.975 19 C -0.232 4.232 20 C -0.120 4.120 21 C -0.063 4.063 22 C -0.113 4.113 23 C -0.043 4.043 24 H 0.252 0.748 25 H 0.375 0.625 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.415 0.585 33 H 0.255 0.745 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 -30.382 -0.099 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.094 0.906 9 N -0.391 5.391 10 C 0.026 3.974 11 C -0.157 4.157 12 C 0.009 3.991 13 N -0.359 5.359 14 C 0.387 3.613 15 O -0.440 6.440 16 C -0.150 4.150 17 O -0.059 6.059 18 C -0.044 4.044 19 C -0.233 4.233 20 C -0.123 4.123 21 C -0.100 4.100 22 C -0.150 4.150 23 C -0.080 4.080 24 H 0.061 0.939 25 H 0.207 0.793 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.252 0.748 33 H 0.270 0.730 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.844 -30.126 -0.102 30.260 hybrid contribution -0.367 1.397 0.016 1.444 sum -3.211 -28.729 -0.086 28.908 Atomic orbital electron populations 1.69818 1.06602 1.26141 1.59430 1.25617 0.96510 1.01254 1.03566 0.85033 0.78190 0.79532 0.76756 1.19076 1.21872 1.21863 1.19691 0.91599 0.85341 1.41329 0.90594 1.42562 1.05757 1.01207 1.89558 1.20674 0.93977 0.84562 0.98202 1.21709 0.98588 0.92141 1.03304 1.21219 0.91452 0.83839 1.02610 1.45856 1.11635 1.04781 1.73597 1.16757 0.86320 0.81786 0.76459 1.90838 1.15698 1.84673 1.52756 1.20900 0.81644 0.94249 1.18207 1.84178 1.17900 1.32348 1.71520 1.24329 1.00384 0.79188 1.00463 1.21808 0.92255 0.99596 1.09670 1.21708 1.00085 0.91644 0.98897 1.20718 0.94198 0.92521 1.02551 1.22432 0.94697 0.95691 1.02165 1.20550 0.96743 0.87418 1.03299 0.93890 0.79264 0.95749 0.95763 0.90782 0.90769 0.91210 0.91212 0.74791 0.72968 0.91409 0.89674 0.90457 0.88034 0.88966 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.68 13.06 21.65 0.28 -59.39 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -38.54 5.60 -343.44 -1.92 -40.46 16 10 C 0.15 6.10 6.26 86.38 0.54 6.64 16 11 C -0.12 -3.66 5.44 30.59 0.17 -3.49 16 12 C 0.13 3.68 5.67 86.38 0.49 4.17 16 13 N -0.71 -18.24 5.55 -467.12 -2.59 -20.83 16 14 C 0.60 17.57 7.79 86.44 0.67 18.24 16 15 O -0.56 -19.79 16.87 -4.33 -0.07 -19.86 16 16 C -0.10 -2.50 7.13 24.06 0.17 -2.33 16 17 O -0.16 -3.35 10.40 -5.55 -0.06 -3.40 16 18 C 0.03 0.35 12.08 67.11 0.81 1.16 16 19 C -0.23 -3.74 6.93 -19.94 -0.14 -3.88 16 20 C -0.12 -2.71 6.66 -19.66 -0.13 -2.84 16 21 C -0.06 -1.16 6.76 30.43 0.21 -0.96 16 22 C -0.11 -1.22 7.06 31.56 0.22 -1.00 16 23 C -0.04 -0.43 6.76 30.48 0.21 -0.22 16 24 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 25 H 0.38 20.27 7.67 -92.71 -0.71 19.56 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.42 8.98 8.23 -92.71 -0.76 8.22 16 33 H 0.25 0.94 8.06 -2.91 -0.02 0.91 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -73.53 334.17 1.78 -71.74 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.40 Total: 25.42 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 4.52 Total: -1.78 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -4.23 Total: -120.69 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.13 Total: -23.27 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -73.53 1.78 -71.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163329781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.437 kcal (2) G-P(sol) polarization free energy of solvation -73.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds