Wall clock time and date at job start Tue Mar 31 2020 00:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00220 * 2 1 4 4 H 1.48498 * 109.47212 * 239.99649 * 3 2 1 5 5 H 1.48492 * 109.47270 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46712 * 119.99994 * 3 2 1 7 7 C 1.38821 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99593 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99930 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47367 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47368 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47133 * 180.02562 * 12 11 10 14 14 C 1.34776 * 119.99982 * 180.02562 * 13 12 11 15 15 O 1.21610 * 119.99824 * 359.97438 * 14 13 12 16 16 C 1.47372 * 119.99766 * 179.97438 * 14 13 12 17 17 C 1.47022 * 127.19639 * 0.15361 * 16 14 13 18 18 C 1.34178 * 105.95398 * 180.26341 * 17 16 14 19 19 O 1.34212 * 109.12405 * 359.75797 * 18 17 16 20 20 C 1.33650 * 110.91128 * 0.02562 * 19 18 17 21 21 C 1.50706 * 125.80370 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.49681 * 300.02488 * 21 20 19 23 23 C 1.53002 * 60.02940 * 107.47810 * 22 21 20 24 24 H 0.97005 * 119.99752 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00011 * 359.97438 * 9 7 2 26 26 H 1.09005 * 109.47046 * 59.99177 * 10 9 7 27 27 H 1.09005 * 109.46869 * 299.99779 * 10 9 7 28 28 H 1.09004 * 109.46963 * 59.99428 * 11 10 9 29 29 H 1.08998 * 109.46873 * 300.00451 * 11 10 9 30 30 H 1.08997 * 109.46749 * 60.00050 * 12 11 10 31 31 H 1.08996 * 109.47223 * 300.00436 * 12 11 10 32 32 H 0.96997 * 120.00034 * 359.97438 * 13 12 11 33 33 H 1.08000 * 127.02192 * 0.05342 * 17 16 14 34 34 H 1.08005 * 125.43705 * 179.79467 * 18 17 16 35 35 H 1.08999 * 115.56047 * 154.33935 * 21 20 19 36 36 H 1.09002 * 117.49833 * 214.97915 * 22 21 20 37 37 H 1.09002 * 117.49953 * 359.97438 * 22 21 20 38 38 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 39 39 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 1.0636 -4.8198 -0.0022 12 6 1.8286 -6.1448 -0.0029 13 7 0.8765 -7.2583 -0.0041 14 6 1.3257 -8.5290 -0.0043 15 8 2.5213 -8.7512 -0.0040 16 6 0.3679 -9.6491 -0.0050 17 6 -1.0998 -9.5635 -0.0086 18 6 -1.5431 -10.8299 -0.0019 19 8 -0.4915 -11.6639 0.0000 20 6 0.6580 -10.9821 -0.0048 21 6 2.0398 -11.5836 -0.0039 22 6 2.4181 -12.4827 1.1749 23 6 2.1516 -13.0975 -0.2006 24 1 -0.4850 0.8401 -0.0004 25 1 0.3554 -2.3881 -0.0016 26 1 2.6840 -3.7150 0.8888 27 1 2.6852 -3.7143 -0.8912 28 1 0.4373 -4.7617 -0.8924 29 1 0.4366 -4.7621 0.8875 30 1 2.4551 -6.2030 0.8871 31 1 2.4553 -6.2021 -0.8928 32 1 -0.0771 -7.0810 -0.0040 33 1 -1.6988 -8.6648 -0.0122 34 1 -2.5805 -11.1302 0.0008 35 1 2.8242 -10.9606 -0.4336 36 1 3.4514 -12.4513 1.5205 37 1 1.6677 -12.6388 1.9499 38 1 3.0096 -13.4706 -0.7599 39 1 1.2258 -13.6578 -0.3306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164604700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:50 Heat of formation + Delta-G solvation = 6.752880 kcal Electronic energy + Delta-G solvation = -20294.899753 eV Core-core repulsion = 17012.148327 eV Total energy + Delta-G solvation = -3282.751426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.87961 -39.39699 -37.41284 -35.98783 -34.32936 -33.21309 -31.84240 -30.03648 -29.48704 -25.72425 -23.87990 -23.15141 -22.74698 -22.33327 -21.19010 -20.71652 -19.75550 -18.12748 -17.00865 -16.56942 -16.25561 -15.91386 -15.60450 -15.51708 -14.94454 -14.49362 -14.18825 -13.89032 -13.31218 -13.24982 -12.94953 -12.83899 -12.43467 -12.37083 -11.92008 -11.62067 -11.26312 -10.95327 -10.90429 -10.82205 -10.76706 -10.60261 -10.13391 -10.07267 -9.93641 -9.69397 -9.06441 -8.87066 -8.70944 -6.93203 -5.76783 -3.05654 1.08629 1.78431 2.44806 3.21207 3.23977 3.45100 3.49036 3.50404 3.57201 4.02658 4.38259 4.56126 4.59672 4.60995 4.62430 4.93084 5.12510 5.16132 5.27125 5.32782 5.43687 5.44716 5.57963 5.64321 5.70678 5.73965 5.78972 5.99302 6.01567 6.07966 6.20210 6.32873 6.48829 6.73889 6.79853 6.84131 7.51957 7.70114 8.21319 8.42290 9.53248 10.10485 10.45221 11.46230 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040764 B = 0.002484 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.719674 B =11269.738464 C =11860.704243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.138 4.138 12 C 0.124 3.876 13 N -0.720 5.720 14 C 0.587 3.413 15 O -0.543 6.543 16 C -0.235 4.235 17 C -0.187 4.187 18 C -0.039 4.039 19 O -0.176 6.176 20 C 0.106 3.894 21 C -0.088 4.088 22 C -0.159 4.159 23 C -0.172 4.172 24 H 0.256 0.744 25 H 0.383 0.617 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.159 0.841 34 H 0.209 0.791 35 H 0.153 0.847 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -27.369 0.329 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C 0.000 4.000 13 N -0.370 5.370 14 C 0.375 3.625 15 O -0.423 6.423 16 C -0.240 4.240 17 C -0.206 4.206 18 C -0.104 4.104 19 O -0.072 6.072 20 C 0.053 3.947 21 C -0.106 4.106 22 C -0.196 4.196 23 C -0.208 4.208 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.235 0.765 33 H 0.177 0.823 34 H 0.226 0.774 35 H 0.170 0.830 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.407 -27.672 0.333 27.710 hybrid contribution -0.667 1.394 -0.005 1.545 sum -2.074 -26.278 0.328 26.362 Atomic orbital electron populations 1.69650 1.05143 1.25795 1.57798 1.24758 0.95565 0.97767 1.03003 0.86233 0.78498 0.83365 0.77899 1.21218 1.21675 1.21222 1.19207 0.91079 0.84128 1.42728 0.91136 1.42333 1.05864 0.99991 1.89628 1.20518 0.93259 0.85156 0.98223 1.21947 0.99604 0.93328 1.02728 1.21372 0.91667 0.84391 1.02550 1.45857 1.10760 1.05414 1.74985 1.17161 0.87125 0.82071 0.76129 1.90747 1.15920 1.84745 1.50860 1.21132 0.93675 0.93324 1.15858 1.22919 0.92756 0.98545 1.06415 1.23860 0.91454 0.88331 1.06785 1.83712 1.13745 1.38270 1.71489 1.21687 0.85932 0.89119 0.97960 1.20846 0.89938 0.93711 1.06075 1.23059 1.03336 1.01629 0.91572 1.23085 1.04069 0.93731 0.99957 0.93459 0.78306 0.96034 0.96022 0.91292 0.91288 0.91233 0.91239 0.76537 0.82311 0.77442 0.82959 0.87443 0.88448 0.87665 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.85 5.60 -59.91 -0.34 -19.19 16 10 C 0.16 3.16 6.26 -4.04 -0.03 3.13 16 11 C -0.14 -2.15 5.44 -26.73 -0.15 -2.29 16 12 C 0.12 1.74 5.67 -4.04 -0.02 1.72 16 13 N -0.72 -9.08 5.55 -61.40 -0.34 -9.42 16 14 C 0.59 8.26 7.81 -12.54 -0.10 8.16 16 15 O -0.54 -9.09 14.93 5.27 0.08 -9.01 16 16 C -0.24 -2.82 6.31 -103.28 -0.65 -3.47 16 17 C -0.19 -1.68 10.60 -37.45 -0.40 -2.08 16 18 C -0.04 -0.30 12.03 29.30 0.35 0.05 16 19 O -0.18 -1.73 10.23 7.67 0.08 -1.65 16 20 C 0.11 1.19 6.86 -34.96 -0.24 0.95 16 21 C -0.09 -0.89 5.62 -91.73 -0.52 -1.41 16 22 C -0.16 -1.28 10.23 -26.73 -0.27 -1.55 16 23 C -0.17 -1.28 10.17 -26.69 -0.27 -1.55 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.38 10.22 7.67 -40.82 -0.31 9.91 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.40 4.11 7.64 -40.82 -0.31 3.80 16 33 H 0.16 1.06 7.74 -52.49 -0.41 0.65 16 34 H 0.21 0.74 8.06 -52.48 -0.42 0.31 16 35 H 0.15 1.75 6.68 -51.93 -0.35 1.40 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.71 7.96 -51.93 -0.41 0.30 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -33.90 337.90 -7.83 -41.73 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.56 Total: 8.47 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.53 Total: -5.85 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.05 Total: -56.35 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.16 Total: -10.66 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.90 -7.83 -41.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164604700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.483 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds