Wall clock time and date at job start Tue Mar 31 2020 00:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00220 * 2 1 4 4 H 1.48498 * 109.47212 * 239.99649 * 3 2 1 5 5 H 1.48492 * 109.47270 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46712 * 119.99994 * 3 2 1 7 7 C 1.38821 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99593 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99930 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47367 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47368 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47133 * 180.02562 * 12 11 10 14 14 C 1.34776 * 119.99982 * 180.02562 * 13 12 11 15 15 O 1.21610 * 119.99824 * 359.97438 * 14 13 12 16 16 C 1.47372 * 119.99766 * 179.97438 * 14 13 12 17 17 C 1.47022 * 127.19639 * 0.15361 * 16 14 13 18 18 C 1.34178 * 105.95398 * 180.26341 * 17 16 14 19 19 O 1.34212 * 109.12405 * 359.75797 * 18 17 16 20 20 C 1.33650 * 110.91128 * 0.02562 * 19 18 17 21 21 C 1.50706 * 125.80370 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.49681 * 300.02488 * 21 20 19 23 23 C 1.53002 * 60.02940 * 107.47810 * 22 21 20 24 24 H 0.97005 * 119.99752 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00011 * 359.97438 * 9 7 2 26 26 H 1.09005 * 109.47046 * 59.99177 * 10 9 7 27 27 H 1.09005 * 109.46869 * 299.99779 * 10 9 7 28 28 H 1.09004 * 109.46963 * 59.99428 * 11 10 9 29 29 H 1.08998 * 109.46873 * 300.00451 * 11 10 9 30 30 H 1.08997 * 109.46749 * 60.00050 * 12 11 10 31 31 H 1.08996 * 109.47223 * 300.00436 * 12 11 10 32 32 H 0.96997 * 120.00034 * 359.97438 * 13 12 11 33 33 H 1.08000 * 127.02192 * 0.05342 * 17 16 14 34 34 H 1.08005 * 125.43705 * 179.79467 * 18 17 16 35 35 H 1.08999 * 115.56047 * 154.33935 * 21 20 19 36 36 H 1.09002 * 117.49833 * 214.97915 * 22 21 20 37 37 H 1.09002 * 117.49953 * 359.97438 * 22 21 20 38 38 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 39 39 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 1.0636 -4.8198 -0.0022 12 6 1.8286 -6.1448 -0.0029 13 7 0.8765 -7.2583 -0.0041 14 6 1.3257 -8.5290 -0.0043 15 8 2.5213 -8.7512 -0.0040 16 6 0.3679 -9.6491 -0.0050 17 6 -1.0998 -9.5635 -0.0086 18 6 -1.5431 -10.8299 -0.0019 19 8 -0.4915 -11.6639 0.0000 20 6 0.6580 -10.9821 -0.0048 21 6 2.0398 -11.5836 -0.0039 22 6 2.4181 -12.4827 1.1749 23 6 2.1516 -13.0975 -0.2006 24 1 -0.4850 0.8401 -0.0004 25 1 0.3554 -2.3881 -0.0016 26 1 2.6840 -3.7150 0.8888 27 1 2.6852 -3.7143 -0.8912 28 1 0.4373 -4.7617 -0.8924 29 1 0.4366 -4.7621 0.8875 30 1 2.4551 -6.2030 0.8871 31 1 2.4553 -6.2021 -0.8928 32 1 -0.0771 -7.0810 -0.0040 33 1 -1.6988 -8.6648 -0.0122 34 1 -2.5805 -11.1302 0.0008 35 1 2.8242 -10.9606 -0.4336 36 1 3.4514 -12.4513 1.5205 37 1 1.6677 -12.6388 1.9499 38 1 3.0096 -13.4706 -0.7599 39 1 1.2258 -13.6578 -0.3306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164604700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:49 Heat of formation + Delta-G solvation = -16.029696 kcal Electronic energy + Delta-G solvation = -20295.887680 eV Core-core repulsion = 17012.148327 eV Total energy + Delta-G solvation = -3283.739352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.60670 -40.49638 -38.08628 -37.48948 -35.90573 -34.17637 -33.49948 -31.25892 -30.66086 -27.28008 -25.27406 -23.99759 -23.70827 -23.29690 -22.62380 -21.59782 -20.69185 -19.24535 -18.77526 -17.35590 -17.19538 -17.02023 -16.72952 -16.49250 -16.30627 -15.64256 -15.46974 -15.28933 -15.03853 -14.59701 -13.97112 -13.87203 -13.52739 -13.31224 -13.09457 -12.79108 -12.59727 -12.48251 -12.45025 -12.10640 -12.07653 -11.93574 -11.80232 -11.49918 -11.04185 -10.94250 -10.84491 -10.15057 -9.44899 -9.02810 -7.96984 -5.26346 0.24094 1.11206 1.47479 1.50751 1.56888 1.73177 2.20197 2.25931 2.56366 2.88257 3.36673 3.37484 3.68876 3.73246 3.78513 3.92479 3.99608 4.06741 4.22572 4.26999 4.43868 4.52383 4.68440 4.69181 4.71667 4.76577 4.83740 4.87975 5.01731 5.07253 5.16319 5.26252 5.30086 5.34399 5.42281 5.48079 6.00781 6.25616 6.51993 7.17004 7.31997 8.06493 8.30607 9.26385 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040764 B = 0.002484 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.719674 B =11269.738464 C =11860.704243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.153 3.847 11 C -0.118 4.118 12 C 0.135 3.865 13 N -0.710 5.710 14 C 0.583 3.417 15 O -0.579 6.579 16 C -0.264 4.264 17 C -0.199 4.199 18 C -0.027 4.027 19 O -0.178 6.178 20 C 0.099 3.901 21 C -0.116 4.116 22 C -0.155 4.155 23 C -0.152 4.152 24 H 0.253 0.747 25 H 0.376 0.624 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.413 0.587 33 H 0.180 0.820 34 H 0.252 0.748 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 -28.544 0.396 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.026 3.974 11 C -0.156 4.156 12 C 0.011 3.989 13 N -0.362 5.362 14 C 0.372 3.628 15 O -0.461 6.461 16 C -0.269 4.269 17 C -0.217 4.217 18 C -0.091 4.091 19 O -0.074 6.074 20 C 0.046 3.954 21 C -0.134 4.134 22 C -0.192 4.192 23 C -0.188 4.188 24 H 0.061 0.939 25 H 0.208 0.792 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.250 0.750 33 H 0.198 0.802 34 H 0.268 0.732 35 H 0.149 0.851 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.139 0.861 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.021 -28.875 0.399 28.949 hybrid contribution -0.474 1.672 -0.028 1.738 sum -2.495 -27.203 0.371 27.320 Atomic orbital electron populations 1.69801 1.06576 1.26300 1.59248 1.25606 0.96498 1.01208 1.03466 0.85179 0.77220 0.78932 0.78237 1.20348 1.21918 1.20354 1.19617 0.91569 0.85410 1.41689 0.90714 1.42537 1.05738 1.01155 1.89586 1.20668 0.94038 0.84683 0.98032 1.21697 0.98524 0.92133 1.03258 1.21115 0.91591 0.84149 1.02070 1.45701 1.11218 1.04708 1.74553 1.17523 0.87105 0.82747 0.75378 1.90722 1.17497 1.85283 1.52556 1.21161 0.94996 0.92938 1.17780 1.23193 0.91272 1.00163 1.07118 1.24726 0.92428 0.87662 1.04314 1.83732 1.13804 1.38588 1.71322 1.21859 0.86717 0.89200 0.97661 1.20788 0.89328 0.95038 1.08273 1.23146 1.03866 1.00489 0.91650 1.23178 1.04891 0.91498 0.99279 0.93860 0.79229 0.95958 0.95942 0.90748 0.90747 0.91798 0.91790 0.75038 0.80245 0.73199 0.85081 0.86629 0.88202 0.86138 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.25 -14.26 9.99 84.04 0.84 -13.42 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -38.39 5.60 -343.44 -1.92 -40.31 16 10 C 0.15 6.10 6.26 86.38 0.54 6.65 16 11 C -0.12 -3.58 5.44 30.59 0.17 -3.41 16 12 C 0.13 3.75 5.67 86.38 0.49 4.24 16 13 N -0.71 -17.55 5.55 -466.43 -2.59 -20.14 16 14 C 0.58 16.55 7.81 86.65 0.68 17.22 16 15 O -0.58 -20.01 14.93 -4.06 -0.06 -20.07 16 16 C -0.26 -6.23 6.31 -18.99 -0.12 -6.35 16 17 C -0.20 -3.19 10.60 23.65 0.25 -2.94 16 18 C -0.03 -0.33 12.03 66.89 0.80 0.47 16 19 O -0.18 -3.19 10.23 4.52 0.05 -3.15 16 20 C 0.10 2.19 6.86 25.26 0.17 2.36 16 21 C -0.12 -2.37 5.62 -11.51 -0.06 -2.44 16 22 C -0.15 -2.38 10.23 30.60 0.31 -2.07 16 23 C -0.15 -2.07 10.17 30.62 0.31 -1.76 16 24 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 25 H 0.38 20.15 7.67 -92.71 -0.71 19.44 16 26 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.41 7.97 7.64 -92.71 -0.71 7.27 16 33 H 0.18 1.95 7.74 -2.91 -0.02 1.92 16 34 H 0.25 0.69 8.06 -2.91 -0.02 0.66 16 35 H 0.13 3.22 6.68 -2.39 -0.02 3.20 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 1.33 7.96 -2.39 -0.02 1.31 16 Total: -1.00 -73.11 337.90 2.28 -70.82 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.35 Total: 28.88 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.85 Total: -5.35 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -4.23 Total: -119.50 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.01 Total: -23.21 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -73.11 2.28 -70.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164604700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.795 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds