Wall clock time and date at job start Tue Mar 31 2020 00:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48496 * 109.47187 * 270.00139 * 3 2 1 5 5 H 1.48501 * 109.46995 * 30.00629 * 3 2 1 6 6 H 1.48502 * 109.47097 * 150.00159 * 3 2 1 7 7 C 1.38630 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00159 * 0.02562 * 7 2 1 9 9 O 1.34815 * 120.00037 * 179.97438 * 7 2 1 10 10 C 1.35811 * 117.00111 * 185.05838 * 9 7 2 11 11 C 1.39451 * 120.40690 * 354.55217 * 10 9 7 12 12 C 1.38203 * 118.44980 * 179.72110 * 11 10 9 13 13 C 1.39170 * 119.16933 * 0.50041 * 12 11 10 14 14 N 1.39123 * 119.63168 * 179.77007 * 13 12 11 15 15 C 1.46504 * 119.99975 * 359.71966 * 14 13 12 16 16 C 1.52998 * 109.47268 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.48010 * 304.97548 * 16 15 14 18 18 C 1.53097 * 109.48263 * 184.94455 * 16 15 14 19 19 C 1.53172 * 109.16484 * 182.40888 * 18 16 15 20 20 C 1.53174 * 109.03653 * 56.97688 * 19 18 16 21 21 C 1.53092 * 109.16378 * 303.01823 * 20 19 18 22 22 O 1.42899 * 109.41521 * 57.61100 * 21 20 19 23 23 N 1.32381 * 120.73991 * 359.48455 * 13 12 11 24 24 C 1.31933 * 121.68869 * 0.26344 * 23 13 12 25 25 H 0.97007 * 119.99638 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.77335 * 0.02562 * 11 10 9 27 27 H 1.07999 * 120.41692 * 180.26071 * 12 11 10 28 28 H 0.97006 * 120.00290 * 179.72072 * 14 13 12 29 29 H 1.09000 * 109.47102 * 59.99870 * 15 14 13 30 30 H 1.09002 * 109.47008 * 300.00377 * 15 14 13 31 31 H 1.09004 * 109.51802 * 302.31744 * 18 16 15 32 32 H 1.09000 * 109.51873 * 62.50020 * 18 16 15 33 33 H 1.09006 * 109.54153 * 297.11359 * 19 18 16 34 34 H 1.08994 * 109.54191 * 176.84672 * 19 18 16 35 35 H 1.09009 * 109.52246 * 183.11568 * 20 19 18 36 36 H 1.08994 * 109.52450 * 62.92990 * 20 19 18 37 37 H 1.09007 * 109.47915 * 177.59184 * 21 20 19 38 38 H 1.08996 * 109.48076 * 297.61711 * 21 20 19 39 39 H 1.08002 * 119.61923 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4474 2.6526 0.7002 6 1 3.5474 1.4400 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 1.4688 -2.1359 -0.0014 9 8 3.3570 -1.2007 -0.0011 10 6 3.9735 -2.4061 -0.1083 11 6 3.2270 -3.5840 -0.0979 12 6 3.8953 -4.7880 -0.2154 13 6 5.2824 -4.7856 -0.3288 14 7 5.9653 -5.9924 -0.4427 15 6 5.2248 -7.2565 -0.4368 16 6 6.2056 -8.4227 -0.5739 17 1 6.8160 -8.2814 -1.4658 18 6 5.4255 -9.7348 -0.6917 19 6 6.4139 -10.9024 -0.7679 20 6 7.3185 -10.8728 0.4678 21 6 8.0255 -9.5168 0.5407 22 8 7.0496 -8.4737 0.5781 23 7 5.9589 -3.6477 -0.3350 24 6 5.3528 -2.4806 -0.2299 25 1 -0.4850 0.8401 0.0004 26 1 2.1514 -3.5558 -0.0052 27 1 3.3484 -5.7193 -0.2153 28 1 6.9317 -5.9968 -0.5261 29 1 4.5237 -7.2708 -1.2712 30 1 4.6762 -7.3518 0.5003 31 1 4.7842 -9.8568 0.1813 32 1 4.8143 -9.7153 -1.5940 33 1 7.0223 -10.8070 -1.6674 34 1 5.8650 -11.8436 -0.7956 35 1 8.0612 -11.6673 0.3948 36 1 6.7155 -11.0179 1.3642 37 1 8.6379 -9.4742 1.4415 38 1 8.6599 -9.3901 -0.3364 39 1 5.9377 -1.5727 -0.2384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164689448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:36 Heat of formation + Delta-G solvation = -39.731153 kcal Electronic energy + Delta-G solvation = -20848.474128 eV Core-core repulsion = 17563.707004 eV Total energy + Delta-G solvation = -3284.767125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91914 -39.48711 -37.44800 -35.19583 -33.94232 -32.37921 -31.76142 -31.30995 -28.59065 -26.57869 -25.00879 -24.29594 -23.29103 -22.04759 -21.08443 -20.55239 -18.15780 -17.41568 -16.71095 -16.52396 -16.20590 -15.84103 -14.95008 -14.83417 -14.49930 -14.28709 -14.17411 -13.80758 -13.53459 -13.21645 -13.01036 -12.69658 -12.45508 -12.36319 -12.21358 -12.12807 -11.64309 -11.48239 -11.43368 -11.02707 -10.88993 -10.60322 -10.25245 -9.74086 -9.60118 -9.34805 -8.99803 -8.80266 -8.60443 -6.72857 -6.37127 -4.01662 1.98584 2.35449 3.25873 3.29642 3.43536 3.44861 3.55347 4.28164 4.39399 4.47254 4.50502 4.62953 4.67264 4.84627 4.89605 4.94764 5.09932 5.14214 5.24030 5.33320 5.36895 5.43524 5.49867 5.57257 5.64526 5.69905 5.72374 5.77349 5.88777 5.91038 5.96270 6.46006 6.72540 6.95839 7.06186 7.08833 7.60893 7.72906 8.01634 8.14152 8.85632 8.98663 9.61013 10.71023 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048451 B = 0.002936 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.770396 B = 9535.913585 C = 9953.552501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.387 4.387 8 H 0.102 0.898 9 O -0.218 6.218 10 C 0.067 3.933 11 C -0.140 4.140 12 C -0.188 4.188 13 C 0.321 3.679 14 N -0.734 5.734 15 C 0.146 3.854 16 C 0.081 3.919 17 H 0.064 0.936 18 C -0.149 4.149 19 C -0.122 4.122 20 C -0.158 4.158 21 C 0.060 3.940 22 O -0.372 6.372 23 N -0.504 5.504 24 C 0.070 3.930 25 H 0.278 0.722 26 H 0.142 0.858 27 H 0.118 0.882 28 H 0.399 0.601 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.357 -20.386 -1.540 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.463 4.463 8 H 0.120 0.880 9 O -0.123 6.123 10 C 0.013 3.987 11 C -0.167 4.167 12 C -0.212 4.212 13 C 0.088 3.912 14 N -0.373 5.373 15 C 0.020 3.980 16 C 0.023 3.977 17 H 0.082 0.918 18 C -0.187 4.187 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.291 6.291 23 N -0.221 5.221 24 C -0.088 4.088 25 H 0.088 0.912 26 H 0.159 0.841 27 H 0.136 0.864 28 H 0.234 0.766 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.947 -20.014 -1.428 23.879 hybrid contribution -0.499 0.338 -0.156 0.623 sum 12.448 -19.676 -1.584 23.336 Atomic orbital electron populations 1.69663 1.05553 1.28378 1.48670 1.24436 0.95012 0.98810 0.95849 0.86167 0.80355 0.81402 0.78905 1.19953 1.20916 1.18264 1.20691 0.77042 0.96445 1.52133 0.88026 1.83580 1.22316 1.24629 1.81816 1.19970 0.92997 0.86329 0.99438 1.21517 1.01360 0.91262 1.02548 1.21133 0.92888 0.98376 1.08830 1.17959 0.88268 0.85825 0.99135 1.43825 1.08450 1.01027 1.84015 1.21199 0.93409 0.81546 1.01798 1.22317 0.91907 0.94352 0.89095 0.91829 1.22142 0.98694 0.94404 1.03473 1.21572 0.97724 0.98567 0.98047 1.22207 0.99869 0.98258 0.99207 1.22566 0.90460 0.86512 1.02147 1.88033 1.47478 1.52120 1.41421 1.66939 1.39580 0.97062 1.18517 1.21446 0.89559 0.94415 1.03391 0.91161 0.84058 0.86371 0.76648 0.91193 0.91777 0.90553 0.90433 0.91802 0.91310 0.90992 0.90954 0.88862 0.93279 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.65 13.96 55.48 0.77 -24.87 16 2 C 0.06 1.73 5.49 -17.51 -0.10 1.64 16 3 Si 0.91 21.78 28.62 -169.99 -4.86 16.92 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.39 -10.90 9.96 30.88 0.31 -10.59 16 8 H 0.10 2.91 5.49 -52.48 -0.29 2.62 16 9 O -0.22 -5.76 8.60 -0.10 0.00 -5.76 16 10 C 0.07 1.56 6.67 -38.97 -0.26 1.30 16 11 C -0.14 -3.02 9.25 -39.14 -0.36 -3.39 16 12 C -0.19 -3.50 9.32 -39.25 -0.37 -3.87 16 13 C 0.32 5.95 7.65 -154.91 -1.19 4.76 16 14 N -0.73 -10.86 5.68 -60.38 -0.34 -11.20 16 15 C 0.15 1.69 4.56 -4.04 -0.02 1.67 16 16 C 0.08 0.77 2.68 -26.68 -0.07 0.70 16 17 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 18 C -0.15 -1.11 5.42 -26.59 -0.14 -1.26 16 19 C -0.12 -0.78 6.03 -26.55 -0.16 -0.94 16 20 C -0.16 -1.03 6.14 -26.59 -0.16 -1.19 16 21 C 0.06 0.47 6.84 37.21 0.25 0.73 16 22 O -0.37 -4.07 10.35 -35.23 -0.36 -4.44 16 23 N -0.50 -10.16 10.39 -12.25 -0.13 -10.28 16 24 C 0.07 1.49 11.14 -17.35 -0.19 1.29 16 25 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.14 3.12 5.76 -52.49 -0.30 2.82 16 27 H 0.12 1.85 6.70 -52.49 -0.35 1.50 16 28 H 0.40 5.69 8.60 -40.82 -0.35 5.34 16 29 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 30 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -30.91 322.08 -8.01 -38.92 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.48 Total: 5.01 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.46 Total: -9.15 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.30 Total: -46.36 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.37 Total: -10.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.91 -8.01 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164689448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.813 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds