Wall clock time and date at job start Tue Mar 31 2020 00:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48496 * 109.47187 * 270.00139 * 3 2 1 5 5 H 1.48501 * 109.46995 * 30.00629 * 3 2 1 6 6 H 1.48502 * 109.47097 * 150.00159 * 3 2 1 7 7 C 1.38630 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00159 * 0.02562 * 7 2 1 9 9 O 1.34815 * 120.00037 * 179.97438 * 7 2 1 10 10 C 1.35811 * 117.00111 * 185.05838 * 9 7 2 11 11 C 1.39451 * 120.40690 * 354.55217 * 10 9 7 12 12 C 1.38203 * 118.44980 * 179.72110 * 11 10 9 13 13 C 1.39170 * 119.16933 * 0.50041 * 12 11 10 14 14 N 1.39123 * 119.63168 * 179.77007 * 13 12 11 15 15 C 1.46504 * 119.99975 * 359.71966 * 14 13 12 16 16 C 1.52998 * 109.47268 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.48010 * 304.97548 * 16 15 14 18 18 C 1.53097 * 109.48263 * 184.94455 * 16 15 14 19 19 C 1.53172 * 109.16484 * 182.40888 * 18 16 15 20 20 C 1.53174 * 109.03653 * 56.97688 * 19 18 16 21 21 C 1.53092 * 109.16378 * 303.01823 * 20 19 18 22 22 O 1.42899 * 109.41521 * 57.61100 * 21 20 19 23 23 N 1.32381 * 120.73991 * 359.48455 * 13 12 11 24 24 C 1.31933 * 121.68869 * 0.26344 * 23 13 12 25 25 H 0.97007 * 119.99638 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.77335 * 0.02562 * 11 10 9 27 27 H 1.07999 * 120.41692 * 180.26071 * 12 11 10 28 28 H 0.97006 * 120.00290 * 179.72072 * 14 13 12 29 29 H 1.09000 * 109.47102 * 59.99870 * 15 14 13 30 30 H 1.09002 * 109.47008 * 300.00377 * 15 14 13 31 31 H 1.09004 * 109.51802 * 302.31744 * 18 16 15 32 32 H 1.09000 * 109.51873 * 62.50020 * 18 16 15 33 33 H 1.09006 * 109.54153 * 297.11359 * 19 18 16 34 34 H 1.08994 * 109.54191 * 176.84672 * 19 18 16 35 35 H 1.09009 * 109.52246 * 183.11568 * 20 19 18 36 36 H 1.08994 * 109.52450 * 62.92990 * 20 19 18 37 37 H 1.09007 * 109.47915 * 177.59184 * 21 20 19 38 38 H 1.08996 * 109.48076 * 297.61711 * 21 20 19 39 39 H 1.08002 * 119.61923 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4474 2.6526 0.7002 6 1 3.5474 1.4400 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 1.4688 -2.1359 -0.0014 9 8 3.3570 -1.2007 -0.0011 10 6 3.9735 -2.4061 -0.1083 11 6 3.2270 -3.5840 -0.0979 12 6 3.8953 -4.7880 -0.2154 13 6 5.2824 -4.7856 -0.3288 14 7 5.9653 -5.9924 -0.4427 15 6 5.2248 -7.2565 -0.4368 16 6 6.2056 -8.4227 -0.5739 17 1 6.8160 -8.2814 -1.4658 18 6 5.4255 -9.7348 -0.6917 19 6 6.4139 -10.9024 -0.7679 20 6 7.3185 -10.8728 0.4678 21 6 8.0255 -9.5168 0.5407 22 8 7.0496 -8.4737 0.5781 23 7 5.9589 -3.6477 -0.3350 24 6 5.3528 -2.4806 -0.2299 25 1 -0.4850 0.8401 0.0004 26 1 2.1514 -3.5558 -0.0052 27 1 3.3484 -5.7193 -0.2153 28 1 6.9317 -5.9968 -0.5261 29 1 4.5237 -7.2708 -1.2712 30 1 4.6762 -7.3518 0.5003 31 1 4.7842 -9.8568 0.1813 32 1 4.8143 -9.7153 -1.5940 33 1 7.0223 -10.8070 -1.6674 34 1 5.8650 -11.8436 -0.7956 35 1 8.0612 -11.6673 0.3948 36 1 6.7155 -11.0179 1.3642 37 1 8.6379 -9.4742 1.4415 38 1 8.6599 -9.3901 -0.3364 39 1 5.9377 -1.5727 -0.2384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164689448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:36 Heat of formation + Delta-G solvation = -59.837496 kcal Electronic energy + Delta-G solvation = -20849.346005 eV Core-core repulsion = 17563.707004 eV Total energy + Delta-G solvation = -3285.639001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.36028 -40.43110 -39.16819 -36.45207 -34.55376 -34.40012 -32.96696 -32.71024 -29.99471 -27.76193 -26.72421 -25.11115 -24.64892 -23.24301 -22.48846 -21.17974 -20.02693 -19.17415 -17.99149 -17.62587 -17.41162 -16.78571 -16.27561 -15.97044 -15.84767 -15.54536 -15.33196 -15.05875 -14.88215 -14.62289 -14.39549 -13.94067 -13.90171 -13.69815 -13.54926 -13.29904 -13.02195 -12.73415 -12.20343 -12.08028 -11.98339 -11.62127 -11.61768 -11.23967 -11.05100 -10.62897 -10.45682 -10.40062 -10.39267 -8.45584 -8.30313 -6.14431 0.34418 0.67637 1.36010 1.39854 1.56840 2.25965 2.32741 2.77360 2.84419 3.10376 3.20914 3.71655 3.81008 3.91709 3.94653 4.04726 4.08944 4.16787 4.22462 4.28622 4.35650 4.49706 4.61348 4.68680 4.77859 4.85038 4.89189 4.94334 5.05381 5.07951 5.15411 5.20619 5.37763 5.40002 5.42180 5.67581 6.01181 6.21083 6.31112 6.72747 6.89176 7.28888 7.63883 8.66157 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048451 B = 0.002936 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.770396 B = 9535.913585 C = 9953.552501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.395 4.395 8 H 0.081 0.919 9 O -0.241 6.241 10 C 0.026 3.974 11 C -0.142 4.142 12 C -0.186 4.186 13 C 0.336 3.664 14 N -0.722 5.722 15 C 0.138 3.862 16 C 0.085 3.915 17 H 0.071 0.929 18 C -0.146 4.146 19 C -0.121 4.121 20 C -0.155 4.155 21 C 0.054 3.946 22 O -0.399 6.399 23 N -0.516 5.516 24 C 0.081 3.919 25 H 0.283 0.717 26 H 0.129 0.871 27 H 0.151 0.849 28 H 0.404 0.596 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.204 -22.202 -2.095 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.472 4.472 8 H 0.099 0.901 9 O -0.148 6.148 10 C -0.026 4.026 11 C -0.169 4.169 12 C -0.211 4.211 13 C 0.101 3.899 14 N -0.359 5.359 15 C 0.014 3.986 16 C 0.027 3.973 17 H 0.089 0.911 18 C -0.185 4.185 19 C -0.158 4.158 20 C -0.193 4.193 21 C -0.023 4.023 22 O -0.319 6.319 23 N -0.234 5.234 24 C -0.077 4.077 25 H 0.093 0.907 26 H 0.146 0.854 27 H 0.169 0.831 28 H 0.239 0.761 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 14.836 -21.904 -1.989 26.530 hybrid contribution -0.887 0.535 0.009 1.036 sum 13.949 -21.369 -1.980 25.595 Atomic orbital electron populations 1.69742 1.06868 1.29468 1.50670 1.25231 0.95843 1.02102 0.95744 0.85227 0.78907 0.77470 0.79222 1.19165 1.19520 1.18474 1.20672 0.78183 0.96041 1.52272 0.90140 1.83522 1.20983 1.26105 1.84185 1.20343 0.94032 0.86096 1.02095 1.21584 1.00932 0.92158 1.02215 1.21360 0.93166 0.98522 1.08039 1.18333 0.88579 0.86670 0.96344 1.44058 1.08938 1.00829 1.82056 1.21494 0.94157 0.80687 1.02280 1.22295 0.91699 0.94300 0.88960 0.91136 1.22134 0.98798 0.93679 1.03855 1.21594 0.97594 0.98500 0.98158 1.22188 1.00136 0.97922 0.99022 1.22743 0.90190 0.86512 1.02816 1.87984 1.48317 1.53472 1.42141 1.67087 1.39429 0.97233 1.19620 1.21717 0.88748 0.95533 1.01696 0.90706 0.85377 0.83143 0.76068 0.89534 0.92099 0.91109 0.89160 0.91118 0.90239 0.89350 0.91747 0.88457 0.92435 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.96 21.61 0.30 -54.94 16 2 C 0.01 0.50 5.49 84.82 0.47 0.97 16 3 Si 0.97 45.46 28.62 68.60 1.96 47.42 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.39 -23.06 9.96 67.91 0.68 -22.39 16 8 H 0.08 4.87 5.49 -2.91 -0.02 4.85 16 9 O -0.24 -13.00 8.60 -23.27 -0.20 -13.20 16 10 C 0.03 1.24 6.67 22.66 0.15 1.40 16 11 C -0.14 -6.20 9.25 22.55 0.21 -5.99 16 12 C -0.19 -6.66 9.32 22.49 0.21 -6.45 16 13 C 0.34 11.75 7.65 133.04 1.02 12.77 16 14 N -0.72 -19.43 5.68 -344.94 -1.96 -21.39 16 15 C 0.14 2.80 4.56 86.38 0.39 3.19 16 16 C 0.09 1.39 2.68 30.63 0.08 1.47 16 17 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 18 C -0.15 -1.78 5.42 30.68 0.17 -1.61 16 19 C -0.12 -1.18 6.03 30.71 0.19 -1.00 16 20 C -0.16 -1.64 6.14 30.68 0.19 -1.45 16 21 C 0.05 0.73 6.84 72.01 0.49 1.22 16 22 O -0.40 -7.91 10.35 -148.98 -1.54 -9.45 16 23 N -0.52 -19.93 10.39 -192.67 -2.00 -21.94 16 24 C 0.08 3.34 11.14 84.78 0.94 4.29 16 25 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 26 H 0.13 5.91 5.76 -2.91 -0.02 5.89 16 27 H 0.15 4.33 6.70 -2.91 -0.02 4.31 16 28 H 0.40 10.45 8.60 -92.70 -0.80 9.65 16 29 H 0.09 1.53 7.91 -2.39 -0.02 1.51 16 30 H 0.06 1.33 7.94 -2.39 -0.02 1.31 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.17 6.20 8.06 -2.91 -0.02 6.18 16 Total: -1.00 -67.35 322.08 2.01 -65.34 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.26 Total: 21.73 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 5.18 Total: -13.58 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -3.66 Total: -98.26 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -1.74 Total: -22.65 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.96 Total: 47.42 kcal Total: -67.35 2.01 -65.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164689448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.505 kcal (2) G-P(sol) polarization free energy of solvation -67.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds