Wall clock time and date at job start Tue Mar 31 2020 00:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46696 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46732 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99820 * 179.97438 * 13 12 11 15 15 O 1.21273 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00011 * 180.02562 * 14 13 12 17 17 H 1.09004 * 115.54642 * 34.28331 * 16 14 13 18 18 C 1.52990 * 117.50166 * 248.61368 * 16 14 13 19 19 C 1.52991 * 117.50140 * 179.97438 * 16 14 13 20 20 H 1.09006 * 117.49934 * 0.02562 * 19 16 14 21 21 C 1.50699 * 117.50484 * 214.98171 * 19 16 14 22 22 C 1.34518 * 125.78907 * 119.99412 * 21 19 16 23 23 C 1.41382 * 106.83879 * 180.02562 * 22 21 19 24 24 C 1.34515 * 106.84213 * 0.02562 * 23 22 21 25 25 O 1.34304 * 108.42180 * 359.72818 * 24 23 22 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 29 29 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 30 30 H 1.09003 * 109.46508 * 299.99548 * 11 10 9 31 31 H 1.08993 * 109.47679 * 59.99698 * 11 10 9 32 32 H 1.08995 * 109.46904 * 299.99571 * 12 11 10 33 33 H 1.09001 * 109.47205 * 59.99718 * 12 11 10 34 34 H 0.97003 * 120.00125 * 0.02562 * 13 12 11 35 35 H 1.09001 * 117.49815 * 359.97438 * 18 16 14 36 36 H 1.09006 * 117.50051 * 144.99861 * 18 16 14 37 37 H 1.07994 * 126.57907 * 0.04763 * 22 21 19 38 38 H 1.08001 * 126.58143 * 179.97438 * 23 22 21 39 39 H 1.08006 * 125.79071 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 6 1.8286 -6.1447 -0.0265 13 7 0.8766 -7.2581 -0.0324 14 6 1.3258 -8.5289 -0.0390 15 8 2.5181 -8.7505 -0.0398 16 6 0.3465 -9.6742 -0.0456 17 1 -0.5764 -9.5005 -0.5990 18 6 0.2630 -10.5396 1.2133 19 6 0.9188 -11.0930 -0.0537 20 1 2.0038 -11.1981 -0.0538 21 6 0.1636 -12.1438 -0.8260 22 6 0.6442 -12.8575 -1.8600 23 6 -0.3943 -13.7199 -2.2803 24 6 -1.4476 -13.4812 -1.4785 25 8 -1.1021 -12.5297 -0.5959 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.6846 -3.7098 -0.9038 29 1 2.6846 -3.7192 0.8761 30 1 0.4367 -4.7667 0.8700 31 1 0.4372 -4.7571 -0.9099 32 1 2.4558 -6.1978 -0.9164 33 1 2.4547 -6.2070 0.8636 34 1 -0.0771 -7.0808 -0.0321 35 1 0.9167 -10.2807 2.0462 36 1 -0.7148 -10.9352 1.4881 37 1 1.6336 -12.7858 -2.2868 38 1 -0.3506 -14.4329 -3.0904 39 1 -2.4068 -13.9749 -1.5319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167133796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:39 Heat of formation + Delta-G solvation = 8.016060 kcal Electronic energy + Delta-G solvation = -19892.968052 eV Core-core repulsion = 16610.271401 eV Total energy + Delta-G solvation = -3282.696650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.91108 -40.08922 -37.10015 -35.87376 -34.35643 -33.31273 -32.00198 -30.01816 -29.48074 -25.98715 -24.06503 -23.51771 -22.33162 -21.99638 -21.23606 -20.49765 -20.00073 -18.02492 -17.40692 -16.89254 -16.32574 -16.00162 -15.70744 -15.23872 -14.78900 -14.34840 -14.30496 -13.50573 -13.28459 -13.14840 -13.11956 -12.91813 -12.82368 -12.45460 -12.27720 -11.69238 -11.35667 -10.98131 -10.95691 -10.89793 -10.78970 -10.63026 -10.21764 -10.12260 -9.95098 -9.70986 -9.10144 -8.88880 -8.68530 -6.94568 -5.78097 -3.07045 1.30629 2.20182 2.41220 2.57729 3.06243 3.43582 3.48611 3.50424 3.53182 4.11318 4.29879 4.44793 4.58318 4.63681 4.72980 4.80814 4.94774 5.10954 5.26983 5.29073 5.45523 5.52036 5.56574 5.59628 5.61046 5.69470 5.77209 5.96167 6.04376 6.16217 6.17550 6.30586 6.41345 6.77465 6.80613 6.81735 7.41527 7.69378 8.10911 8.40856 9.51982 10.08990 10.43677 11.44906 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048238 B = 0.002137 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.314214 B =13101.109355 C =13279.833341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.721 5.721 14 C 0.542 3.458 15 O -0.542 6.542 16 C -0.175 4.175 17 H 0.128 0.872 18 C -0.137 4.137 19 C -0.049 4.049 20 H 0.148 0.852 21 C 0.017 3.983 22 C -0.200 4.200 23 C -0.213 4.213 24 C -0.043 4.043 25 O -0.176 6.176 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.403 0.597 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -28.310 -1.103 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.371 5.371 14 C 0.327 3.673 15 O -0.419 6.419 16 C -0.196 4.196 17 H 0.146 0.854 18 C -0.174 4.174 19 C -0.067 4.067 20 H 0.166 0.834 21 C -0.033 4.033 22 C -0.219 4.219 23 C -0.232 4.232 24 C -0.110 4.110 25 O -0.072 6.072 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.237 0.763 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.916 -28.190 -0.869 28.353 hybrid contribution -0.382 0.917 -0.375 1.062 sum -3.298 -27.273 -1.244 27.500 Atomic orbital electron populations 1.69660 1.05138 1.25690 1.57829 1.24764 0.95576 0.97790 1.03005 0.86157 0.78651 0.83659 0.77538 1.21687 1.21747 1.20707 1.19249 0.91113 0.84114 1.42647 0.91075 1.42339 1.05870 0.99992 1.89615 1.20523 0.93264 0.85185 0.98225 1.21949 0.99591 0.93277 1.02782 1.21395 0.91708 0.84505 1.02545 1.45986 1.10932 1.05500 1.74708 1.19471 0.88462 0.83302 0.76028 1.90706 1.16553 1.84747 1.49916 1.22397 1.01496 0.90530 1.05221 0.85439 1.23104 1.03418 0.99934 0.90956 1.20488 0.98837 0.88324 0.99071 0.83400 1.21350 0.83105 0.99884 0.98968 1.21583 1.01572 0.99696 0.99063 1.21861 0.93806 1.03930 1.03583 1.24040 1.00946 0.93845 0.92164 1.83973 1.28245 1.45904 1.49088 0.93500 0.78296 0.96048 0.96024 0.91238 0.91255 0.91252 0.91253 0.76308 0.87098 0.87025 0.83251 0.83351 0.78004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.71 5.60 -59.90 -0.34 -19.04 16 10 C 0.16 3.11 6.26 -4.04 -0.03 3.08 16 11 C -0.14 -2.09 5.44 -26.73 -0.15 -2.23 16 12 C 0.12 1.64 5.67 -4.04 -0.02 1.62 16 13 N -0.72 -8.19 5.56 -60.29 -0.33 -8.53 16 14 C 0.54 6.63 7.61 -10.98 -0.08 6.55 16 15 O -0.54 -8.58 16.26 5.56 0.09 -8.49 16 16 C -0.18 -1.61 5.89 -91.78 -0.54 -2.15 16 17 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.14 -1.08 9.87 -26.73 -0.26 -1.35 16 19 C -0.05 -0.45 5.75 -91.77 -0.53 -0.98 16 20 H 0.15 1.43 7.67 -51.93 -0.40 1.03 16 21 C 0.02 0.16 6.80 -35.62 -0.24 -0.08 16 22 C -0.20 -1.83 10.81 -39.70 -0.43 -2.26 16 23 C -0.21 -1.65 10.91 -39.70 -0.43 -2.09 16 24 C -0.04 -0.31 12.09 29.42 0.36 0.05 16 25 O -0.18 -1.63 10.36 5.70 0.06 -1.57 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.38 10.15 7.67 -40.82 -0.31 9.84 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.40 3.60 8.47 -40.82 -0.35 3.25 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.11 0.76 7.96 -51.93 -0.41 0.35 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.20 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -33.99 341.53 -7.95 -41.93 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.67 Total: 8.00 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.60 Total: -7.33 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.05 Total: -55.20 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.15 Total: -10.06 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.99 -7.95 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167133796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.950 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds