Wall clock time and date at job start Tue Mar 31 2020 00:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46696 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46732 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99820 * 179.97438 * 13 12 11 15 15 O 1.21273 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00011 * 180.02562 * 14 13 12 17 17 H 1.09004 * 115.54642 * 34.28331 * 16 14 13 18 18 C 1.52990 * 117.50166 * 248.61368 * 16 14 13 19 19 C 1.52991 * 117.50140 * 179.97438 * 16 14 13 20 20 H 1.09006 * 117.49934 * 0.02562 * 19 16 14 21 21 C 1.50699 * 117.50484 * 214.98171 * 19 16 14 22 22 C 1.34518 * 125.78907 * 119.99412 * 21 19 16 23 23 C 1.41382 * 106.83879 * 180.02562 * 22 21 19 24 24 C 1.34515 * 106.84213 * 0.02562 * 23 22 21 25 25 O 1.34304 * 108.42180 * 359.72818 * 24 23 22 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 29 29 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 30 30 H 1.09003 * 109.46508 * 299.99548 * 11 10 9 31 31 H 1.08993 * 109.47679 * 59.99698 * 11 10 9 32 32 H 1.08995 * 109.46904 * 299.99571 * 12 11 10 33 33 H 1.09001 * 109.47205 * 59.99718 * 12 11 10 34 34 H 0.97003 * 120.00125 * 0.02562 * 13 12 11 35 35 H 1.09001 * 117.49815 * 359.97438 * 18 16 14 36 36 H 1.09006 * 117.50051 * 144.99861 * 18 16 14 37 37 H 1.07994 * 126.57907 * 0.04763 * 22 21 19 38 38 H 1.08001 * 126.58143 * 179.97438 * 23 22 21 39 39 H 1.08006 * 125.79071 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 6 1.8286 -6.1447 -0.0265 13 7 0.8766 -7.2581 -0.0324 14 6 1.3258 -8.5289 -0.0390 15 8 2.5181 -8.7505 -0.0398 16 6 0.3465 -9.6742 -0.0456 17 1 -0.5764 -9.5005 -0.5990 18 6 0.2630 -10.5396 1.2133 19 6 0.9188 -11.0930 -0.0537 20 1 2.0038 -11.1981 -0.0538 21 6 0.1636 -12.1438 -0.8260 22 6 0.6442 -12.8575 -1.8600 23 6 -0.3943 -13.7199 -2.2803 24 6 -1.4476 -13.4812 -1.4785 25 8 -1.1021 -12.5297 -0.5959 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.6846 -3.7098 -0.9038 29 1 2.6846 -3.7192 0.8761 30 1 0.4367 -4.7667 0.8700 31 1 0.4372 -4.7571 -0.9099 32 1 2.4558 -6.1978 -0.9164 33 1 2.4547 -6.2070 0.8636 34 1 -0.0771 -7.0808 -0.0321 35 1 0.9167 -10.2807 2.0462 36 1 -0.7148 -10.9352 1.4881 37 1 1.6336 -12.7858 -2.2868 38 1 -0.3506 -14.4329 -3.0904 39 1 -2.4068 -13.9749 -1.5319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167133796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:39 Heat of formation + Delta-G solvation = -14.735783 kcal Electronic energy + Delta-G solvation = -19893.954646 eV Core-core repulsion = 16610.271401 eV Total energy + Delta-G solvation = -3283.683244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.52104 -41.04527 -38.01814 -37.22413 -35.89162 -33.92707 -33.75408 -31.41599 -30.39992 -27.42324 -25.48637 -24.17636 -23.79476 -22.62114 -22.58688 -21.28040 -20.87386 -19.20895 -18.68893 -18.00303 -17.23483 -16.86590 -16.82349 -16.50412 -16.01886 -15.53799 -15.45902 -15.28870 -14.78976 -14.19947 -13.83745 -13.76716 -13.73556 -13.41694 -13.31309 -12.91905 -12.82465 -12.61451 -12.43959 -12.11645 -12.05975 -12.01186 -11.79448 -11.64038 -11.00054 -10.95306 -10.82930 -10.14549 -9.30262 -9.02718 -7.97281 -5.26489 0.67799 1.41276 1.47554 1.49301 1.57898 1.67943 1.93828 2.17286 2.55863 2.81347 3.36532 3.43794 3.57413 3.73858 3.75641 4.00674 4.07735 4.11613 4.17420 4.28268 4.35944 4.45395 4.63984 4.72157 4.72289 4.83817 4.85830 4.91026 5.02164 5.05428 5.20130 5.27158 5.30907 5.39674 5.48326 5.58879 6.19416 6.25501 6.49934 7.16988 7.31900 8.06627 8.30427 9.26194 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048238 B = 0.002137 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.314214 B =13101.109355 C =13279.833341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.133 3.867 13 N -0.712 5.712 14 C 0.541 3.459 15 O -0.582 6.582 16 C -0.174 4.174 17 H 0.145 0.855 18 C -0.120 4.120 19 C -0.055 4.055 20 H 0.137 0.863 21 C 0.000 4.000 22 C -0.216 4.216 23 C -0.228 4.228 24 C -0.037 4.037 25 O -0.185 6.185 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.417 0.583 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -29.322 -1.084 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.025 3.975 11 C -0.156 4.156 12 C 0.008 3.992 13 N -0.363 5.363 14 C 0.328 3.672 15 O -0.462 6.462 16 C -0.195 4.195 17 H 0.162 0.838 18 C -0.158 4.158 19 C -0.073 4.073 20 H 0.155 0.845 21 C -0.050 4.050 22 C -0.235 4.235 23 C -0.247 4.247 24 C -0.104 4.104 25 O -0.082 6.082 26 H 0.061 0.939 27 H 0.208 0.792 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.254 0.746 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.169 0.831 38 H 0.185 0.815 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.574 -29.230 -0.850 29.460 hybrid contribution -0.156 1.131 -0.405 1.211 sum -3.730 -28.099 -1.255 28.373 Atomic orbital electron populations 1.69807 1.06558 1.26204 1.59325 1.25608 0.96511 1.01216 1.03545 0.85109 0.77694 0.79274 0.77489 1.21320 1.21978 1.19479 1.19651 0.91576 0.85415 1.41499 0.90692 1.42546 1.05746 1.01175 1.89549 1.20688 0.94103 0.84753 0.98005 1.21702 0.98482 0.92163 1.03302 1.21118 0.91687 0.84335 1.02022 1.45851 1.11408 1.04850 1.74167 1.19951 0.88393 0.83930 0.74910 1.90689 1.18448 1.85324 1.51787 1.22335 1.01172 0.89302 1.06671 0.83764 1.23183 1.03968 0.98326 0.90274 1.20404 0.98442 0.88299 1.00158 0.84536 1.21366 0.83587 1.00510 0.99488 1.21861 1.02239 1.00189 0.99256 1.22171 0.93625 1.04367 1.04541 1.24817 1.02067 0.92660 0.90869 1.83964 1.27979 1.46525 1.49745 0.93884 0.79224 0.96042 0.95922 0.90638 0.90794 0.91971 0.91748 0.74647 0.86968 0.85454 0.83072 0.81525 0.74412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.25 -14.09 9.99 84.04 0.84 -13.25 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 9 N -0.75 -38.02 5.60 -343.44 -1.92 -39.94 16 10 C 0.15 5.95 6.26 86.38 0.54 6.49 16 11 C -0.12 -3.45 5.44 30.60 0.17 -3.28 16 12 C 0.13 3.44 5.67 86.38 0.49 3.93 16 13 N -0.71 -15.22 5.56 -463.06 -2.57 -17.80 16 14 C 0.54 12.81 7.61 87.66 0.67 13.48 16 15 O -0.58 -18.49 16.26 -3.01 -0.05 -18.53 16 16 C -0.17 -2.98 5.89 -11.55 -0.07 -3.04 16 17 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 18 C -0.12 -1.72 9.87 30.60 0.30 -1.42 16 19 C -0.05 -0.97 5.75 -11.54 -0.07 -1.04 16 20 H 0.14 2.72 7.67 -2.38 -0.02 2.70 16 21 C 0.00 0.00 6.80 24.83 0.17 0.17 16 22 C -0.22 -3.85 10.81 22.19 0.24 -3.61 16 23 C -0.23 -3.19 10.91 22.19 0.24 -2.95 16 24 C -0.04 -0.45 12.09 66.97 0.81 0.36 16 25 O -0.19 -3.11 10.36 -2.52 -0.03 -3.14 16 26 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 27 H 0.38 19.98 7.67 -92.71 -0.71 19.27 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.42 6.61 8.47 -92.71 -0.79 5.83 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.13 1.45 7.96 -2.38 -0.02 1.43 16 37 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.24 0.78 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -72.41 341.53 2.11 -70.31 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -0.43 Total: 27.80 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.80 Total: -8.12 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -4.21 Total: -116.56 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.08 Total: -21.67 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -72.41 2.11 -70.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167133796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.571 kcal (2) G-P(sol) polarization free energy of solvation -72.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds