Wall clock time and date at job start Mon Mar 30 2020 23:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46715 * 2 1 4 4 C 1.36943 * 119.99741 * 95.35544 * 3 2 1 5 5 H 1.08005 * 119.99564 * 161.33460 * 4 3 2 6 6 C 1.38808 * 120.00326 * 341.33347 * 4 3 2 7 7 N 1.31629 * 119.99713 * 351.68118 * 6 4 3 8 8 Si 1.86791 * 120.00297 * 171.68507 * 6 4 3 9 9 H 1.48499 * 109.47253 * 90.00052 * 8 6 4 10 10 H 1.48506 * 109.47240 * 210.00197 * 8 6 4 11 11 H 1.48496 * 109.47113 * 329.99935 * 8 6 4 12 12 C 1.46493 * 120.00374 * 275.35371 * 3 2 1 13 13 H 1.09005 * 109.47669 * 172.72671 * 12 3 2 14 14 C 1.52998 * 109.47187 * 52.72379 * 12 3 2 15 15 C 1.50707 * 109.47091 * 292.72473 * 12 3 2 16 16 N 1.30976 * 126.43546 * 228.18144 * 15 12 3 17 17 C 1.35217 * 105.57329 * 180.11963 * 16 15 12 18 18 C 1.48449 * 126.40928 * 179.84154 * 17 16 15 19 19 N 1.33980 * 125.64598 * 359.69303 * 18 17 16 20 20 C 1.30630 * 109.78868 * 180.02562 * 19 18 17 21 21 N 1.34577 * 108.29139 * 0.02562 * 20 19 18 22 22 H 0.96999 * 126.74899 * 180.02562 * 21 20 19 23 23 N 1.31482 * 125.64249 * 179.71164 * 18 17 16 24 24 N 1.30751 * 107.17638 * 359.58399 * 17 16 15 25 25 O 1.21284 * 110.09892 * 0.26015 * 24 17 16 26 26 H 1.08998 * 109.47493 * 305.77822 * 1 2 3 27 27 H 1.09002 * 109.47249 * 65.78364 * 1 2 3 28 28 H 1.09004 * 109.47157 * 185.77761 * 1 2 3 29 29 H 1.08991 * 109.47167 * 240.00418 * 2 1 3 30 30 H 1.08994 * 109.47124 * 120.00111 * 2 1 3 31 31 H 0.96996 * 120.00073 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47353 * 60.00099 * 14 12 3 33 33 H 1.09004 * 109.47602 * 180.02562 * 14 12 3 34 34 H 1.09004 * 109.46914 * 300.00132 * 14 12 3 35 35 H 1.07996 * 125.85813 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3508 1.9899 1.1808 5 1 2.9797 2.8679 1.1773 6 6 1.8796 1.4784 2.3821 7 7 0.9851 0.5128 2.3805 8 14 2.5148 2.1604 4.0009 9 1 1.6561 3.2926 4.4321 10 1 2.4834 1.0939 5.0338 11 1 3.9101 2.6369 3.8238 12 6 2.1508 2.1114 -1.2631 13 1 2.4006 3.1522 -1.0568 14 6 0.8289 2.0467 -2.0307 15 6 3.2440 1.4873 -2.0918 16 7 4.2211 2.1189 -2.6931 17 6 4.9474 1.1600 -3.3108 18 6 6.1652 1.3698 -4.1333 19 7 6.7346 2.5534 -4.3977 20 6 7.7885 2.3791 -5.1496 21 7 7.9228 1.0618 -5.3898 22 1 8.6157 0.6359 -5.9184 23 7 6.8635 0.4247 -4.7233 24 7 4.3794 0.0131 -3.0434 25 8 3.4022 0.1845 -2.3458 26 1 -0.3634 0.6008 0.8337 27 1 -0.3634 0.4215 -0.9372 28 1 -0.3634 -1.0225 0.1035 29 1 1.8933 -0.5137 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 0.6560 0.1551 3.2200 32 1 0.0383 2.4981 -1.4314 33 1 0.9276 2.5896 -2.9708 34 1 0.5792 1.0059 -2.2371 35 1 8.4399 3.1585 -5.5163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167267813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:55 Heat of formation + Delta-G solvation = 198.306773 kcal Electronic energy + Delta-G solvation = -21553.894029 eV Core-core repulsion = 18208.201411 eV Total energy + Delta-G solvation = -3345.692618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.05691 -42.28494 -36.97765 -35.48241 -33.35329 -32.59151 -31.79498 -30.67644 -29.64543 -28.73601 -25.16597 -24.55947 -23.54412 -22.73844 -21.93112 -20.92710 -19.57587 -18.70081 -17.62290 -17.12950 -16.49860 -15.66882 -15.61465 -15.14701 -14.60729 -14.53755 -13.82202 -13.34821 -12.43142 -12.37488 -12.21348 -11.96520 -11.81166 -11.73747 -11.43961 -10.96849 -10.85778 -10.75094 -10.55394 -10.50425 -10.40642 -10.32895 -10.21146 -9.99629 -9.64778 -9.37939 -9.25441 -8.51076 -7.03201 -5.79776 -3.32962 0.98789 1.69378 2.22937 2.27315 3.23137 3.26353 3.33912 3.42078 3.44268 3.48626 3.97843 4.38852 4.50620 4.82091 5.25448 5.29478 5.36450 5.73958 5.81982 5.85461 5.91457 6.09460 6.25577 6.36619 6.55620 6.68128 6.70351 6.74746 6.99045 7.12302 7.18260 7.60969 7.72565 7.77264 8.16661 8.29421 8.59552 9.13794 9.67049 10.11152 11.17775 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.004562 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.621588 B = 6136.243409 C = 6687.094058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.163 3.837 3 N -0.573 5.573 4 C -0.263 4.263 5 H 0.076 0.924 6 C 0.007 3.993 7 N -0.896 5.896 8 Si 0.912 3.088 9 H -0.286 1.286 10 H -0.289 1.289 11 H -0.280 1.280 12 C 0.251 3.749 13 H 0.113 0.887 14 C -0.159 4.159 15 C 0.205 3.795 16 N -0.469 5.469 17 C 0.231 3.769 18 C 0.321 3.679 19 N -0.506 5.506 20 C 0.264 3.736 21 N -0.481 5.481 22 H 0.445 0.555 23 N -0.275 5.275 24 N -0.364 5.364 25 O 0.095 5.905 26 H 0.093 0.907 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.011 0.989 30 H 0.090 0.910 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.473 2.286 -13.615 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 N -0.292 5.292 4 C -0.392 4.392 5 H 0.094 0.906 6 C -0.191 4.191 7 N -0.541 5.541 8 Si 0.741 3.259 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.205 1.205 12 C 0.136 3.864 13 H 0.130 0.870 14 C -0.218 4.218 15 C -0.019 4.019 16 N -0.202 5.202 17 C -0.041 4.041 18 C 0.039 3.961 19 N -0.234 5.234 20 C -0.035 4.035 21 N -0.202 5.202 22 H 0.291 0.709 23 N -0.108 5.108 24 N -0.072 5.072 25 O 0.033 5.967 26 H 0.112 0.888 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.612 1.364 -13.626 16.177 hybrid contribution 1.020 0.167 0.467 1.134 sum 9.632 1.531 -13.158 16.379 Atomic orbital electron populations 1.22555 0.98310 0.99460 1.00618 1.20880 0.93184 0.83377 0.98654 1.44357 1.73834 1.11019 0.99985 1.19353 1.25484 1.11072 0.83292 0.90620 1.24952 0.97284 0.98761 0.98138 1.70158 1.30221 1.28650 1.25066 0.86146 0.78614 0.78008 0.83086 1.21238 1.21537 1.20538 1.19160 0.87100 0.95322 0.84797 0.86959 1.22456 0.97407 1.02684 0.99279 1.31685 0.97400 0.79273 0.93512 1.72063 1.05166 1.30038 1.12968 1.21665 0.96125 0.85671 1.00669 1.19907 0.93086 0.86743 0.96391 1.70559 1.08888 1.26056 1.17915 1.26263 0.95697 0.86935 0.94580 1.48214 1.23973 1.06707 1.41285 0.70850 1.78399 0.99865 1.18787 1.13700 1.74927 0.99895 1.22357 1.09975 1.85407 1.33470 1.29945 1.47895 0.88837 0.96269 0.96064 0.97056 0.89232 0.93554 0.90333 0.93244 0.91608 0.75283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.04 37.16 0.34 -2.94 16 2 C 0.16 3.78 4.96 -4.04 -0.02 3.76 16 3 N -0.57 -13.39 2.48 -166.98 -0.41 -13.80 16 4 C -0.26 -6.75 9.66 -15.06 -0.15 -6.90 16 5 H 0.08 1.91 7.80 -52.48 -0.41 1.50 16 6 C 0.01 0.17 5.18 -17.43 -0.09 0.08 16 7 N -0.90 -23.67 7.89 55.49 0.44 -23.23 16 8 Si 0.91 20.92 29.56 -169.99 -5.03 15.89 16 9 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.25 4.97 3.26 -69.08 -0.23 4.75 16 13 H 0.11 2.18 7.87 -51.93 -0.41 1.77 16 14 C -0.16 -2.68 7.80 37.16 0.29 -2.39 16 15 C 0.20 4.18 7.19 -12.99 -0.09 4.08 16 16 N -0.47 -9.73 11.58 -9.88 -0.11 -9.85 16 17 C 0.23 4.70 8.16 -156.11 -1.27 3.42 16 18 C 0.32 5.68 8.08 -156.62 -1.27 4.42 16 19 N -0.51 -7.72 11.21 -12.37 -0.14 -7.86 16 20 C 0.26 2.39 13.11 -90.69 -1.19 1.20 16 21 N -0.48 -4.43 7.44 29.52 0.22 -4.21 16 22 H 0.45 1.97 8.96 -182.34 -1.63 0.34 16 23 N -0.27 -4.24 12.84 32.11 0.41 -3.83 16 24 N -0.36 -7.57 12.20 30.96 0.38 -7.19 16 25 O 0.10 1.98 9.33 18.04 0.17 2.15 16 26 H 0.09 2.31 6.12 -51.93 -0.32 1.99 16 27 H 0.02 0.37 5.05 -51.93 -0.26 0.10 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.25 6.06 -51.93 -0.31 -0.06 16 30 H 0.09 2.35 6.11 -51.93 -0.32 2.03 16 31 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.08 1.33 7.99 -51.93 -0.42 0.91 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.12 6.00 -51.93 -0.31 0.81 16 35 H 0.23 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 296.92 15.07 4.47 4.47 Total: -1.00 -32.23 296.92 -8.07 -40.31 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.79 Total: -2.34 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -3.68 Total: 9.48 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: 0.78 Total: -69.97 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.17 Total: 2.15 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.23 -8.07 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167267813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.613 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds