Wall clock time and date at job start Mon Mar 30 2020 23:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46715 * 2 1 4 4 C 1.36943 * 119.99741 * 95.35544 * 3 2 1 5 5 H 1.08005 * 119.99564 * 161.33460 * 4 3 2 6 6 C 1.38808 * 120.00326 * 341.33347 * 4 3 2 7 7 N 1.31629 * 119.99713 * 351.68118 * 6 4 3 8 8 Si 1.86791 * 120.00297 * 171.68507 * 6 4 3 9 9 H 1.48499 * 109.47253 * 90.00052 * 8 6 4 10 10 H 1.48506 * 109.47240 * 210.00197 * 8 6 4 11 11 H 1.48496 * 109.47113 * 329.99935 * 8 6 4 12 12 C 1.46493 * 120.00374 * 275.35371 * 3 2 1 13 13 H 1.09005 * 109.47669 * 172.72671 * 12 3 2 14 14 C 1.52998 * 109.47187 * 52.72379 * 12 3 2 15 15 C 1.50707 * 109.47091 * 292.72473 * 12 3 2 16 16 N 1.30976 * 126.43546 * 228.18144 * 15 12 3 17 17 C 1.35217 * 105.57329 * 180.11963 * 16 15 12 18 18 C 1.48449 * 126.40928 * 179.84154 * 17 16 15 19 19 N 1.33980 * 125.64598 * 359.69303 * 18 17 16 20 20 C 1.30630 * 109.78868 * 180.02562 * 19 18 17 21 21 N 1.34577 * 108.29139 * 0.02562 * 20 19 18 22 22 H 0.96999 * 126.74899 * 180.02562 * 21 20 19 23 23 N 1.31482 * 125.64249 * 179.71164 * 18 17 16 24 24 N 1.30751 * 107.17638 * 359.58399 * 17 16 15 25 25 O 1.21284 * 110.09892 * 0.26015 * 24 17 16 26 26 H 1.08998 * 109.47493 * 305.77822 * 1 2 3 27 27 H 1.09002 * 109.47249 * 65.78364 * 1 2 3 28 28 H 1.09004 * 109.47157 * 185.77761 * 1 2 3 29 29 H 1.08991 * 109.47167 * 240.00418 * 2 1 3 30 30 H 1.08994 * 109.47124 * 120.00111 * 2 1 3 31 31 H 0.96996 * 120.00073 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47353 * 60.00099 * 14 12 3 33 33 H 1.09004 * 109.47602 * 180.02562 * 14 12 3 34 34 H 1.09004 * 109.46914 * 300.00132 * 14 12 3 35 35 H 1.07996 * 125.85813 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3508 1.9899 1.1808 5 1 2.9797 2.8679 1.1773 6 6 1.8796 1.4784 2.3821 7 7 0.9851 0.5128 2.3805 8 14 2.5148 2.1604 4.0009 9 1 1.6561 3.2926 4.4321 10 1 2.4834 1.0939 5.0338 11 1 3.9101 2.6369 3.8238 12 6 2.1508 2.1114 -1.2631 13 1 2.4006 3.1522 -1.0568 14 6 0.8289 2.0467 -2.0307 15 6 3.2440 1.4873 -2.0918 16 7 4.2211 2.1189 -2.6931 17 6 4.9474 1.1600 -3.3108 18 6 6.1652 1.3698 -4.1333 19 7 6.7346 2.5534 -4.3977 20 6 7.7885 2.3791 -5.1496 21 7 7.9228 1.0618 -5.3898 22 1 8.6157 0.6359 -5.9184 23 7 6.8635 0.4247 -4.7233 24 7 4.3794 0.0131 -3.0434 25 8 3.4022 0.1845 -2.3458 26 1 -0.3634 0.6008 0.8337 27 1 -0.3634 0.4215 -0.9372 28 1 -0.3634 -1.0225 0.1035 29 1 1.8933 -0.5137 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 0.6560 0.1551 3.2200 32 1 0.0383 2.4981 -1.4314 33 1 0.9276 2.5896 -2.9708 34 1 0.5792 1.0059 -2.2371 35 1 8.4399 3.1585 -5.5163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167267813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:54 Heat of formation + Delta-G solvation = 175.692948 kcal Electronic energy + Delta-G solvation = -21554.874638 eV Core-core repulsion = 18208.201411 eV Total energy + Delta-G solvation = -3346.673227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.62682 -43.25700 -38.71329 -37.01383 -34.94970 -33.73109 -33.15915 -32.10665 -31.33873 -30.45640 -26.53181 -26.25832 -25.13389 -24.02711 -23.22809 -22.53659 -21.04656 -19.65623 -19.20283 -18.88095 -18.08183 -17.14992 -16.71443 -16.65886 -16.07569 -15.68127 -15.55353 -15.14710 -14.04440 -13.86578 -13.55365 -13.46226 -13.36668 -13.18822 -13.11705 -12.69579 -12.61498 -12.42843 -12.34252 -12.14026 -11.98662 -11.61110 -11.43174 -11.36294 -11.27671 -11.15334 -10.63468 -10.41724 -8.90954 -7.75477 -5.29657 -0.29798 0.38529 1.05362 1.31577 1.51232 1.54200 1.61433 1.85286 1.96551 2.24770 2.47469 2.70175 3.35086 3.49420 3.62706 3.71762 4.12462 4.31040 4.36003 4.51485 4.68264 4.76079 4.81887 4.97492 5.02199 5.08915 5.18914 5.30797 5.35245 5.46974 5.63154 5.86553 6.09783 6.32140 6.37805 6.76578 7.03973 7.19878 7.78942 8.19906 9.20037 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.004562 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.621588 B = 6136.243409 C = 6687.094058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.170 3.830 3 N -0.587 5.587 4 C -0.274 4.274 5 H 0.074 0.926 6 C -0.036 4.036 7 N -0.911 5.911 8 Si 0.967 3.033 9 H -0.282 1.282 10 H -0.295 1.295 11 H -0.281 1.281 12 C 0.251 3.749 13 H 0.115 0.885 14 C -0.148 4.148 15 C 0.205 3.795 16 N -0.479 5.479 17 C 0.232 3.768 18 C 0.288 3.712 19 N -0.550 5.550 20 C 0.294 3.706 21 N -0.457 5.457 22 H 0.468 0.532 23 N -0.300 5.300 24 N -0.379 5.379 25 O 0.083 5.917 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.248 0.752 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.928 3.383 -15.390 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 N -0.306 5.306 4 C -0.403 4.403 5 H 0.092 0.908 6 C -0.232 4.232 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.208 1.208 10 H -0.221 1.221 11 H -0.206 1.206 12 C 0.138 3.862 13 H 0.133 0.867 14 C -0.207 4.207 15 C -0.019 4.019 16 N -0.213 5.213 17 C -0.041 4.041 18 C 0.006 3.994 19 N -0.280 5.280 20 C -0.003 4.003 21 N -0.180 5.180 22 H 0.319 0.681 23 N -0.135 5.135 24 N -0.089 5.089 25 O 0.024 5.976 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges 10.085 2.456 -15.440 18.605 hybrid contribution 0.763 -0.145 0.853 1.154 sum 10.848 2.311 -14.587 18.325 Atomic orbital electron populations 1.22357 0.97179 0.99432 1.00648 1.20690 0.94017 0.83397 0.97307 1.44403 1.74367 1.11256 1.00623 1.19552 1.25331 1.10994 0.84437 0.90835 1.25549 0.97824 0.99401 1.00462 1.70323 1.30910 1.29421 1.25027 0.85293 0.77943 0.77200 0.79995 1.20804 1.22148 1.20636 1.19385 0.88169 0.94887 0.83743 0.86700 1.22337 0.95356 1.03045 1.00002 1.31604 0.97345 0.79321 0.93600 1.72056 1.05366 1.30456 1.13439 1.22186 0.96721 0.85114 1.00080 1.19756 0.93394 0.88274 0.97967 1.70487 1.11273 1.25846 1.20391 1.27400 0.93926 0.87562 0.91446 1.48113 1.22813 1.06941 1.40103 0.68107 1.78254 1.01289 1.19813 1.14139 1.74899 1.00274 1.22898 1.10878 1.85365 1.33864 1.30053 1.48342 0.91553 0.93896 0.95497 0.96126 0.92712 0.94163 0.90160 0.90613 0.91758 0.68979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 9.04 71.98 0.65 -5.31 16 2 C 0.17 7.99 4.96 86.38 0.43 8.42 16 3 N -0.59 -27.59 2.48 -682.21 -1.69 -29.28 16 4 C -0.27 -14.18 9.66 84.03 0.81 -13.37 16 5 H 0.07 3.75 7.80 -2.91 -0.02 3.73 16 6 C -0.04 -1.90 5.18 84.86 0.44 -1.46 16 7 N -0.91 -49.05 7.89 21.65 0.17 -48.88 16 8 Si 0.97 43.48 29.56 68.60 2.03 45.51 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.25 9.87 3.26 44.25 0.14 10.01 16 13 H 0.12 4.42 7.87 -2.38 -0.02 4.40 16 14 C -0.15 -4.78 7.80 71.98 0.56 -4.22 16 15 C 0.20 8.35 7.19 88.36 0.64 8.98 16 16 N -0.48 -19.90 11.58 -302.53 -3.50 -23.40 16 17 C 0.23 9.46 8.16 137.31 1.12 10.58 16 18 C 0.29 9.99 8.08 137.48 1.11 11.10 16 19 N -0.55 -15.73 11.21 -193.05 -2.16 -17.89 16 20 C 0.29 4.16 13.11 180.37 2.37 6.52 16 21 N -0.46 -6.94 7.44 -60.52 -0.45 -7.39 16 22 H 0.47 2.36 8.96 -213.10 -1.91 0.45 16 23 N -0.30 -8.87 12.84 -52.32 -0.67 -9.54 16 24 N -0.38 -15.97 12.20 -59.17 -0.72 -16.69 16 25 O 0.08 3.49 9.33 74.63 0.70 4.19 16 26 H 0.07 3.29 6.12 -2.39 -0.01 3.27 16 27 H 0.04 1.62 5.05 -2.39 -0.01 1.61 16 28 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.02 0.92 6.06 -2.39 -0.01 0.91 16 30 H 0.05 2.95 6.11 -2.39 -0.01 2.94 16 31 H 0.25 13.17 8.31 -92.71 -0.77 12.40 16 32 H 0.08 2.58 7.99 -2.39 -0.02 2.56 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.09 6.00 -2.38 -0.01 2.08 16 35 H 0.30 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: -1.00 -72.38 296.92 1.21 -71.17 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -0.75 Total: 0.97 kcal Atomic # 6 Polarization: 22.98 SS G_CDS: 8.27 Total: 31.25 kcal Atomic # 7 Polarization: -144.06 SS G_CDS: -9.03 Total: -153.09 kcal Atomic # 8 Polarization: 3.49 SS G_CDS: 0.70 Total: 4.19 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -72.38 1.21 -71.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167267813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.862 kcal (2) G-P(sol) polarization free energy of solvation -72.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds