Wall clock time and date at job start Mon Mar 30 2020 23:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46964 * 2 1 4 4 C 1.36937 * 119.99561 * 274.84667 * 3 2 1 5 5 H 1.08000 * 120.00387 * 328.38356 * 4 3 2 6 6 C 1.38818 * 119.99601 * 148.38869 * 4 3 2 7 7 N 1.31618 * 119.99940 * 339.91619 * 6 4 3 8 8 Si 1.86797 * 119.99702 * 159.91216 * 6 4 3 9 9 H 1.48497 * 109.47275 * 60.00411 * 8 6 4 10 10 H 1.48507 * 109.46957 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47535 * 300.00037 * 8 6 4 12 12 C 1.46492 * 120.00105 * 94.85104 * 3 2 1 13 13 H 1.09000 * 109.47646 * 185.68110 * 12 3 2 14 14 C 1.53006 * 109.47232 * 305.68065 * 12 3 2 15 15 C 1.50701 * 109.47529 * 65.68125 * 12 3 2 16 16 N 1.30976 * 126.44120 * 134.99843 * 15 12 3 17 17 C 1.35218 * 105.57608 * 179.97438 * 16 15 12 18 18 C 1.48443 * 126.40749 * 180.02562 * 17 16 15 19 19 N 1.33982 * 125.64743 * 359.68965 * 18 17 16 20 20 C 1.30641 * 109.78736 * 179.85351 * 19 18 17 21 21 N 1.34568 * 108.29099 * 0.41117 * 20 19 18 22 22 H 0.97006 * 126.75051 * 179.73493 * 21 20 19 23 23 N 1.31487 * 125.64258 * 180.02562 * 18 17 16 24 24 N 1.30753 * 107.17662 * 0.02562 * 17 16 15 25 25 O 1.21289 * 110.09721 * 359.97438 * 24 17 16 26 26 H 1.09003 * 109.47066 * 300.00375 * 1 2 3 27 27 H 1.08996 * 109.47023 * 59.99859 * 1 2 3 28 28 H 1.08994 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46870 * 240.00141 * 2 1 3 30 30 H 1.08996 * 109.47023 * 120.00141 * 2 1 3 31 31 H 0.96998 * 119.99756 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47283 * 180.02562 * 14 12 3 33 33 H 1.08998 * 109.47000 * 299.99878 * 14 12 3 34 34 H 1.09001 * 109.46741 * 60.00292 * 14 12 3 35 35 H 1.07995 * 125.85526 * 180.19512 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1521 2.0601 -1.1817 5 1 2.4038 1.5259 -2.0860 6 6 1.9642 3.4350 -1.2174 7 7 1.2902 4.0322 -0.2574 8 14 2.6680 4.4376 -2.6276 9 1 2.0885 3.9630 -3.9099 10 1 2.3316 5.8708 -2.4323 11 1 4.1438 4.2762 -2.6616 12 6 2.3636 2.0361 1.2641 13 1 2.6081 3.0817 1.0768 14 6 1.1738 1.9544 2.2225 15 6 3.5528 1.3447 1.8797 16 7 4.6023 1.9240 2.4075 17 6 5.4000 0.9164 2.8282 18 6 6.7167 1.0565 3.4990 19 7 7.3263 2.2140 3.7886 20 6 8.4669 1.9773 4.3800 21 7 8.6234 0.6444 4.4776 22 1 9.3773 0.1756 4.8684 23 7 7.4809 0.0652 3.9017 24 7 4.7944 -0.2043 2.5334 25 8 3.7347 0.0250 1.9897 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.1586 4.9929 -0.2825 32 1 1.4305 2.4420 3.1629 33 1 0.3137 2.4545 1.7773 34 1 0.9293 0.9088 2.4099 35 1 9.1660 2.7235 4.7275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167267814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:57 Heat of formation + Delta-G solvation = 183.864037 kcal Electronic energy + Delta-G solvation = -21652.100892 eV Core-core repulsion = 18305.781990 eV Total energy + Delta-G solvation = -3346.318902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.94563 -42.22387 -36.87480 -35.37203 -33.03626 -32.37453 -31.94034 -31.20416 -29.78278 -28.43372 -25.08744 -24.43834 -23.63032 -22.79155 -21.87420 -20.86275 -19.60175 -18.67577 -17.54469 -17.26306 -16.27315 -15.59981 -15.53176 -14.99151 -14.61844 -14.11384 -13.94908 -13.56276 -12.44180 -12.37013 -12.29185 -11.87969 -11.79623 -11.64392 -11.57125 -11.17947 -10.96375 -10.68067 -10.59459 -10.40006 -10.34318 -10.26007 -10.21774 -10.01334 -9.85352 -9.73237 -9.16641 -8.60659 -6.95163 -6.00899 -3.46207 1.04726 1.77778 2.28757 2.39054 3.31725 3.33614 3.36890 3.41731 3.44893 3.62057 4.07819 4.40068 4.56568 4.88876 5.26909 5.33232 5.39978 5.87827 5.89929 6.08859 6.14760 6.17261 6.32548 6.47091 6.49271 6.54808 6.55512 6.70315 6.75704 6.94924 7.19249 7.22631 7.29009 7.71092 7.79237 8.28929 8.69682 8.99111 9.60758 10.13616 11.07883 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.019585 B = 0.005313 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.344121 B = 5268.389079 C = 6119.088125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 N -0.569 5.569 4 C -0.270 4.270 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.889 5.889 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.281 1.281 12 C 0.260 3.740 13 H 0.148 0.852 14 C -0.144 4.144 15 C 0.207 3.793 16 N -0.468 5.468 17 C 0.231 3.769 18 C 0.322 3.678 19 N -0.505 5.505 20 C 0.264 3.736 21 N -0.482 5.482 22 H 0.445 0.555 23 N -0.276 5.276 24 N -0.369 5.369 25 O 0.083 5.917 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.261 0.739 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 -4.344 9.073 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 N -0.288 5.288 4 C -0.399 4.399 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.207 1.207 12 C 0.148 3.852 13 H 0.165 0.835 14 C -0.203 4.203 15 C -0.016 4.016 16 N -0.201 5.201 17 C -0.042 4.042 18 C 0.040 3.960 19 N -0.233 5.233 20 C -0.035 4.035 21 N -0.203 5.203 22 H 0.291 0.709 23 N -0.109 5.109 24 N -0.078 5.078 25 O 0.022 5.978 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.379 -4.996 9.170 14.036 hybrid contribution 1.100 0.498 -0.392 1.269 sum 10.479 -4.499 8.778 14.391 Atomic orbital electron populations 1.22326 0.98752 0.98842 1.02448 1.21010 0.92643 0.86354 0.99115 1.43968 1.71792 1.10810 1.02219 1.19101 1.43107 0.90233 0.87416 0.91170 1.25121 0.97227 0.98078 0.97951 1.69913 1.38395 1.10204 1.34519 0.86364 0.79501 0.79104 0.81838 1.20604 1.21314 1.20742 1.19550 0.83342 0.97744 0.84583 0.83455 1.22173 0.99662 1.00574 0.97888 1.32002 0.98696 0.79266 0.91615 1.72129 1.02489 1.29154 1.16375 1.21715 0.94420 0.85614 1.02416 1.19928 0.91898 0.86494 0.97662 1.70583 1.06687 1.27525 1.18494 1.26269 0.95606 0.85952 0.95699 1.48212 1.18323 1.06620 1.47116 0.70913 1.78383 0.95630 1.19439 1.17477 1.74885 0.96601 1.22762 1.13556 1.85338 1.28144 1.29009 1.55326 0.92921 0.92502 0.94818 0.93679 0.93618 0.92855 0.93717 0.89194 0.93813 0.75310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.99 37.16 0.37 -2.66 16 2 C 0.13 2.70 5.43 -4.04 -0.02 2.68 16 3 N -0.57 -13.27 2.37 -166.98 -0.40 -13.67 16 4 C -0.27 -6.93 9.53 -15.06 -0.14 -7.07 16 5 H 0.07 1.80 7.91 -52.49 -0.41 1.39 16 6 C 0.02 0.44 4.82 -17.43 -0.08 0.35 16 7 N -0.89 -23.34 11.37 55.49 0.63 -22.71 16 8 Si 0.90 20.85 29.60 -169.99 -5.03 15.82 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.26 5.85 2.39 -69.08 -0.17 5.69 16 13 H 0.15 3.77 5.71 -51.93 -0.30 3.47 16 14 C -0.14 -2.83 8.00 37.16 0.30 -2.53 16 15 C 0.21 4.55 7.19 -12.99 -0.09 4.45 16 16 N -0.47 -10.60 11.58 -9.88 -0.11 -10.71 16 17 C 0.23 4.92 8.16 -156.11 -1.27 3.65 16 18 C 0.32 5.98 8.08 -156.61 -1.27 4.72 16 19 N -0.51 -8.24 11.21 -12.37 -0.14 -8.37 16 20 C 0.26 2.59 13.11 -90.69 -1.19 1.40 16 21 N -0.48 -4.71 7.44 29.52 0.22 -4.49 16 22 H 0.44 2.17 8.96 -182.33 -1.63 0.54 16 23 N -0.28 -4.41 12.84 32.11 0.41 -4.00 16 24 N -0.37 -7.81 12.20 30.97 0.38 -7.43 16 25 O 0.08 1.76 9.29 18.04 0.17 1.92 16 26 H 0.05 0.97 5.97 -51.93 -0.31 0.66 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.05 0.87 5.88 -51.93 -0.31 0.56 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.90 7.94 -51.93 -0.41 1.49 16 34 H 0.04 0.79 6.59 -51.93 -0.34 0.44 16 35 H 0.23 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 303.77 15.07 4.58 4.58 Total: -1.00 -32.04 303.77 -7.82 -39.86 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.96 Total: -1.46 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -3.57 Total: 10.68 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: 0.99 Total: -71.39 kcal Atomic # 8 Polarization: 1.76 SS G_CDS: 0.17 Total: 1.92 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.04 -7.82 -39.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167267814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.722 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds