Wall clock time and date at job start Mon Mar 30 2020 23:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46964 * 2 1 4 4 C 1.36937 * 119.99561 * 274.84667 * 3 2 1 5 5 H 1.08000 * 120.00387 * 328.38356 * 4 3 2 6 6 C 1.38818 * 119.99601 * 148.38869 * 4 3 2 7 7 N 1.31618 * 119.99940 * 339.91619 * 6 4 3 8 8 Si 1.86797 * 119.99702 * 159.91216 * 6 4 3 9 9 H 1.48497 * 109.47275 * 60.00411 * 8 6 4 10 10 H 1.48507 * 109.46957 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47535 * 300.00037 * 8 6 4 12 12 C 1.46492 * 120.00105 * 94.85104 * 3 2 1 13 13 H 1.09000 * 109.47646 * 185.68110 * 12 3 2 14 14 C 1.53006 * 109.47232 * 305.68065 * 12 3 2 15 15 C 1.50701 * 109.47529 * 65.68125 * 12 3 2 16 16 N 1.30976 * 126.44120 * 134.99843 * 15 12 3 17 17 C 1.35218 * 105.57608 * 179.97438 * 16 15 12 18 18 C 1.48443 * 126.40749 * 180.02562 * 17 16 15 19 19 N 1.33982 * 125.64743 * 359.68965 * 18 17 16 20 20 C 1.30641 * 109.78736 * 179.85351 * 19 18 17 21 21 N 1.34568 * 108.29099 * 0.41117 * 20 19 18 22 22 H 0.97006 * 126.75051 * 179.73493 * 21 20 19 23 23 N 1.31487 * 125.64258 * 180.02562 * 18 17 16 24 24 N 1.30753 * 107.17662 * 0.02562 * 17 16 15 25 25 O 1.21289 * 110.09721 * 359.97438 * 24 17 16 26 26 H 1.09003 * 109.47066 * 300.00375 * 1 2 3 27 27 H 1.08996 * 109.47023 * 59.99859 * 1 2 3 28 28 H 1.08994 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46870 * 240.00141 * 2 1 3 30 30 H 1.08996 * 109.47023 * 120.00141 * 2 1 3 31 31 H 0.96998 * 119.99756 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47283 * 180.02562 * 14 12 3 33 33 H 1.08998 * 109.47000 * 299.99878 * 14 12 3 34 34 H 1.09001 * 109.46741 * 60.00292 * 14 12 3 35 35 H 1.07995 * 125.85526 * 180.19512 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1521 2.0601 -1.1817 5 1 2.4038 1.5259 -2.0860 6 6 1.9642 3.4350 -1.2174 7 7 1.2902 4.0322 -0.2574 8 14 2.6680 4.4376 -2.6276 9 1 2.0885 3.9630 -3.9099 10 1 2.3316 5.8708 -2.4323 11 1 4.1438 4.2762 -2.6616 12 6 2.3636 2.0361 1.2641 13 1 2.6081 3.0817 1.0768 14 6 1.1738 1.9544 2.2225 15 6 3.5528 1.3447 1.8797 16 7 4.6023 1.9240 2.4075 17 6 5.4000 0.9164 2.8282 18 6 6.7167 1.0565 3.4990 19 7 7.3263 2.2140 3.7886 20 6 8.4669 1.9773 4.3800 21 7 8.6234 0.6444 4.4776 22 1 9.3773 0.1756 4.8684 23 7 7.4809 0.0652 3.9017 24 7 4.7944 -0.2043 2.5334 25 8 3.7347 0.0250 1.9897 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.1586 4.9929 -0.2825 32 1 1.4305 2.4420 3.1629 33 1 0.3137 2.4545 1.7773 34 1 0.9293 0.9088 2.4099 35 1 9.1660 2.7235 4.7275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167267814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:56 Heat of formation + Delta-G solvation = 161.379397 kcal Electronic energy + Delta-G solvation = -21653.075899 eV Core-core repulsion = 18305.781990 eV Total energy + Delta-G solvation = -3347.293909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.59638 -43.26021 -38.63314 -36.98653 -34.51946 -33.84407 -33.48038 -32.47864 -31.37108 -30.18357 -26.53362 -26.21200 -25.27379 -24.08471 -23.19058 -22.42012 -21.17537 -19.72217 -19.19031 -18.95206 -17.93651 -17.08257 -16.66417 -16.56718 -15.97285 -15.72726 -15.58901 -15.26921 -14.14998 -13.98670 -13.53812 -13.38958 -13.37050 -13.28583 -13.13561 -12.97852 -12.75842 -12.36130 -12.27879 -12.16542 -12.02115 -11.70426 -11.49641 -11.37000 -11.35353 -11.27432 -10.65375 -10.49953 -8.81325 -7.96485 -5.43089 -0.29958 0.39774 1.06758 1.32257 1.48897 1.54262 1.58595 1.87097 1.97043 2.25189 2.48196 2.70247 3.25590 3.48291 3.70410 3.73446 4.13314 4.45398 4.48548 4.51217 4.70755 4.71326 4.81479 4.90882 4.95840 4.96816 5.02259 5.18220 5.36260 5.42994 5.56562 5.67058 5.75357 6.09723 6.38754 6.77057 7.01755 7.11072 7.72337 8.22848 9.10354 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.019585 B = 0.005313 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.344121 B = 5268.389079 C = 6119.088125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 N -0.581 5.581 4 C -0.281 4.281 5 H 0.064 0.936 6 C -0.021 4.021 7 N -0.904 5.904 8 Si 0.953 3.047 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.290 1.290 12 C 0.264 3.736 13 H 0.117 0.883 14 C -0.130 4.130 15 C 0.205 3.795 16 N -0.489 5.489 17 C 0.230 3.770 18 C 0.288 3.712 19 N -0.554 5.554 20 C 0.294 3.706 21 N -0.456 5.456 22 H 0.468 0.532 23 N -0.297 5.297 24 N -0.377 5.377 25 O 0.084 5.916 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.814 -4.743 10.175 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.007 3.993 3 N -0.301 5.301 4 C -0.411 4.411 5 H 0.082 0.918 6 C -0.220 4.220 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.216 1.216 12 C 0.152 3.848 13 H 0.134 0.866 14 C -0.190 4.190 15 C -0.017 4.017 16 N -0.223 5.223 17 C -0.043 4.043 18 C 0.007 3.993 19 N -0.284 5.284 20 C -0.004 4.004 21 N -0.179 5.179 22 H 0.319 0.681 23 N -0.132 5.132 24 N -0.087 5.087 25 O 0.024 5.976 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges 11.000 -5.435 10.287 16.012 hybrid contribution 0.796 0.573 -0.635 1.168 sum 11.796 -4.861 9.653 15.999 Atomic orbital electron populations 1.22187 0.97231 1.00571 1.01277 1.21128 0.93813 0.84760 0.99623 1.44096 1.72462 1.11742 1.01814 1.19254 1.42929 0.90736 0.88166 0.91806 1.25655 0.97707 0.98780 0.99812 1.70003 1.39120 1.09984 1.35565 0.85577 0.78179 0.77921 0.80167 1.19877 1.21297 1.21650 1.19348 0.84276 0.96098 0.85073 0.86594 1.22018 0.97802 1.01661 0.97483 1.31774 0.98478 0.79692 0.91799 1.72109 1.03029 1.30083 1.17054 1.22217 0.95449 0.84922 1.01684 1.19754 0.91787 0.88023 0.99780 1.70502 1.09274 1.27690 1.20920 1.27381 0.94124 0.86526 0.92342 1.48105 1.17272 1.06964 1.45551 0.68052 1.78234 0.97153 1.20049 1.17736 1.74841 0.96686 1.22908 1.14264 1.85307 1.28370 1.28407 1.55489 0.93040 0.94643 0.91582 0.93769 0.92448 0.93205 0.92536 0.90686 0.92027 0.69041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.99 71.98 0.72 -4.78 16 2 C 0.13 5.22 5.43 86.38 0.47 5.69 16 3 N -0.58 -27.40 2.37 -682.19 -1.62 -29.01 16 4 C -0.28 -14.67 9.53 84.03 0.80 -13.87 16 5 H 0.06 3.34 7.91 -2.91 -0.02 3.31 16 6 C -0.02 -1.08 4.82 84.86 0.41 -0.67 16 7 N -0.90 -48.34 11.37 21.65 0.25 -48.09 16 8 Si 0.95 43.34 29.60 68.60 2.03 45.37 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 C 0.26 12.07 2.39 44.25 0.11 12.17 16 13 H 0.12 6.12 5.71 -2.39 -0.01 6.10 16 14 C -0.13 -5.13 8.00 71.98 0.58 -4.55 16 15 C 0.21 9.14 7.19 88.36 0.63 9.78 16 16 N -0.49 -22.52 11.58 -302.52 -3.50 -26.02 16 17 C 0.23 9.89 8.16 137.31 1.12 11.01 16 18 C 0.29 10.55 8.08 137.48 1.11 11.66 16 19 N -0.55 -17.22 11.21 -193.05 -2.16 -19.39 16 20 C 0.29 4.68 13.11 180.37 2.37 7.04 16 21 N -0.46 -7.42 7.44 -60.52 -0.45 -7.87 16 22 H 0.47 2.72 8.96 -213.09 -1.91 0.81 16 23 N -0.30 -9.05 12.84 -52.33 -0.67 -9.73 16 24 N -0.38 -16.04 12.20 -59.15 -0.72 -16.76 16 25 O 0.08 3.55 9.29 74.61 0.69 4.24 16 26 H 0.05 1.84 5.97 -2.39 -0.01 1.82 16 27 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 30 H 0.06 2.13 5.88 -2.39 -0.01 2.12 16 31 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 3.18 7.94 -2.39 -0.02 3.17 16 34 H 0.06 2.16 6.59 -2.39 -0.02 2.14 16 35 H 0.29 0.33 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -71.96 303.77 1.39 -70.57 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -0.76 Total: 3.22 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 8.31 Total: 33.48 kcal Atomic # 7 Polarization: -147.99 SS G_CDS: -8.88 Total: -156.87 kcal Atomic # 8 Polarization: 3.55 SS G_CDS: 0.69 Total: 4.24 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.96 1.39 -70.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167267814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.945 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds