Wall clock time and date at job start Tue Mar 31 2020 00:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86806 * 120.00004 * 2 1 4 4 H 1.48500 * 109.47036 * 239.99701 * 3 2 1 5 5 H 1.48494 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47054 * 120.00082 * 3 2 1 7 7 C 1.39953 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99992 * 163.96836 * 7 2 1 9 9 C 1.41013 * 119.99888 * 343.96437 * 7 2 1 10 10 C 1.40999 * 120.70704 * 334.86516 * 9 7 2 11 11 C 1.38005 * 118.28222 * 180.02562 * 10 9 7 12 12 C 1.38679 * 119.62899 * 0.28081 * 11 10 9 13 13 N 1.31976 * 121.44405 * 359.39626 * 12 11 10 14 14 C 1.32260 * 121.86471 * 0.63571 * 13 12 11 15 15 N 1.38093 * 119.90591 * 179.67474 * 14 13 12 16 16 C 1.46498 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.53005 * 109.46979 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.54487 * 64.99483 * 17 16 15 19 19 C 1.53176 * 109.53899 * 304.81757 * 17 16 15 20 20 C 1.53108 * 109.15476 * 183.23817 * 19 17 16 21 21 O 1.42907 * 109.48207 * 57.48067 * 20 19 17 22 22 C 1.42903 * 114.09572 * 298.88250 * 21 20 19 23 23 C 1.53097 * 109.41293 * 61.16379 * 22 21 20 24 24 H 0.97006 * 120.00402 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.85922 * 0.02562 * 10 9 7 26 26 H 1.08003 * 120.19152 * 180.02562 * 11 10 9 27 27 H 1.08004 * 119.27863 * 179.71989 * 12 11 10 28 28 H 0.97000 * 119.99897 * 179.97438 * 15 14 13 29 29 H 1.08994 * 109.46807 * 299.98799 * 16 15 14 30 30 H 1.08997 * 109.47598 * 59.99102 * 16 15 14 31 31 H 0.96701 * 114.00077 * 300.00624 * 18 17 16 32 32 H 1.08994 * 109.53046 * 303.05843 * 19 17 16 33 33 H 1.09006 * 109.52562 * 63.25159 * 19 17 16 34 34 H 1.08995 * 109.40930 * 297.49976 * 20 19 17 35 35 H 1.09001 * 109.49087 * 177.50620 * 20 19 17 36 36 H 1.09000 * 109.48161 * 301.18117 * 22 21 20 37 37 H 1.09000 * 109.49343 * 181.14956 * 22 21 20 38 38 H 1.09004 * 109.51794 * 182.48621 * 23 22 21 39 39 H 1.08988 * 109.57451 * 62.32685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0084 -1.2120 -0.0005 8 1 3.0568 -1.2301 -0.2588 9 6 1.3444 -2.4096 0.3363 10 6 0.1966 -2.3908 1.1550 11 6 -0.4133 -3.5922 1.4536 12 6 0.1147 -4.7725 0.9523 13 7 1.1864 -4.7748 0.1819 14 6 1.8169 -3.6577 -0.1404 15 7 2.9388 -3.7078 -0.9441 16 6 3.4293 -4.9969 -1.4377 17 6 4.6741 -4.7731 -2.2988 18 8 5.7294 -4.2535 -1.4876 19 6 4.3508 -3.7785 -3.4180 20 6 5.5771 -3.6227 -4.3214 21 8 5.9507 -4.9000 -4.8421 22 6 6.3101 -5.8554 -3.8420 23 6 5.1127 -6.1025 -2.9207 24 1 -0.4851 0.8401 -0.0004 25 1 -0.1951 -1.4603 1.5385 26 1 -1.2945 -3.6136 2.0777 27 1 -0.3645 -5.7099 1.1933 28 1 3.4021 -2.8893 -1.1816 29 1 3.6821 -5.6372 -0.5927 30 1 2.6545 -5.4751 -2.0370 31 1 5.5208 -3.4097 -1.0639 32 1 3.5120 -4.1512 -4.0057 33 1 4.0918 -2.8128 -2.9836 34 1 6.4034 -3.2103 -3.7425 35 1 5.3388 -2.9499 -5.1452 36 1 7.1460 -5.4721 -3.2569 37 1 6.5999 -6.7910 -4.3202 38 1 5.3981 -6.7974 -2.1309 39 1 4.2894 -6.5242 -3.4970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167540967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:44 Heat of formation + Delta-G solvation = -70.574849 kcal Electronic energy + Delta-G solvation = -22113.257129 eV Core-core repulsion = 18827.152521 eV Total energy + Delta-G solvation = -3286.104608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -39.98469 -38.44829 -36.78171 -34.15151 -34.01357 -32.08669 -31.13289 -30.44405 -29.10329 -26.44568 -25.33421 -23.67062 -22.79119 -21.34808 -20.55769 -20.00896 -17.30872 -17.16403 -16.55210 -16.02406 -15.65833 -15.52862 -14.92639 -14.82567 -14.38506 -14.02385 -13.90975 -13.24583 -12.94364 -12.93702 -12.72919 -12.33626 -11.96757 -11.90732 -11.78596 -11.48384 -11.37112 -11.29750 -10.98524 -10.80469 -10.61169 -10.41009 -9.99171 -9.84782 -9.35897 -9.32510 -9.03288 -8.13070 -7.95920 -6.86382 -6.57743 -4.30565 2.70230 3.01322 3.01914 3.06836 3.19740 3.86210 3.86895 4.18020 4.25001 4.64179 4.75638 4.83971 4.86826 5.02099 5.26466 5.45194 5.58090 5.63494 5.66305 5.69844 5.78941 5.95204 6.01685 6.07476 6.13084 6.30163 6.31435 6.41069 6.71898 6.82117 7.05017 7.12316 7.18138 7.59166 7.67910 7.76029 7.93502 8.20056 8.40202 8.58425 8.72731 8.92283 9.72511 10.15035 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.005771 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.322412 B = 4851.056899 C = 6188.517042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.072 0.928 9 C 0.033 3.967 10 C -0.125 4.125 11 C -0.190 4.190 12 C 0.002 3.998 13 N -0.531 5.531 14 C 0.302 3.698 15 N -0.731 5.731 16 C 0.125 3.875 17 C 0.122 3.878 18 O -0.558 6.558 19 C -0.181 4.181 20 C 0.066 3.934 21 O -0.387 6.387 22 C 0.065 3.935 23 C -0.137 4.137 24 H 0.281 0.719 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.398 0.602 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.379 0.621 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.367 -4.245 -5.136 10.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.490 4.490 8 H 0.090 0.910 9 C 0.026 3.974 10 C -0.151 4.151 11 C -0.213 4.213 12 C -0.152 4.152 13 N -0.248 5.248 14 C 0.065 3.935 15 N -0.372 5.372 16 C -0.001 4.001 17 C 0.081 3.919 18 O -0.365 6.365 19 C -0.219 4.219 20 C -0.011 4.011 21 O -0.306 6.306 22 C -0.011 4.011 23 C -0.176 4.176 24 H 0.092 0.908 25 H 0.143 0.857 26 H 0.113 0.887 27 H 0.135 0.865 28 H 0.235 0.765 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.227 0.773 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.731 -5.658 -5.858 11.940 hybrid contribution -0.426 2.506 0.791 2.662 sum 8.305 -3.152 -5.067 10.227 Atomic orbital electron populations 1.69793 1.07459 1.29212 1.35877 1.25802 0.94727 1.01004 0.92579 0.86397 0.80114 0.80540 0.79840 1.19121 1.20356 1.18908 1.19052 0.96712 0.90927 1.42264 0.90987 1.17910 0.94633 0.91254 0.93588 1.21359 0.98011 0.96756 0.99004 1.21425 1.01215 0.94377 1.04246 1.21372 0.95583 0.96176 1.02020 1.66547 1.10862 1.29789 1.17629 1.18424 0.90432 0.89750 0.94917 1.43630 1.30364 1.06548 1.56646 1.21544 0.93753 0.87799 0.97028 1.21469 0.87131 0.93698 0.89554 1.86452 1.41276 1.42456 1.66321 1.22839 0.99646 1.01111 0.98295 1.22512 0.95807 0.85187 0.97599 1.87888 1.87367 1.22280 1.33039 1.22496 0.95973 0.92579 0.90085 1.22104 0.99995 0.95839 0.99617 0.90838 0.85695 0.88707 0.86485 0.76476 0.92336 0.92474 0.77291 0.89914 0.89973 0.92701 0.89074 0.92411 0.89136 0.89960 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.92 10.93 55.55 0.61 -19.32 16 2 C 0.08 1.81 5.20 -17.32 -0.09 1.72 16 3 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.46 -11.23 8.52 -37.89 -0.32 -11.56 16 8 H 0.07 1.62 6.69 -52.49 -0.35 1.27 16 9 C 0.03 0.85 5.60 -106.47 -0.60 0.25 16 10 C -0.12 -3.19 8.79 -38.62 -0.34 -3.53 16 11 C -0.19 -4.45 10.08 -39.50 -0.40 -4.85 16 12 C 0.00 0.05 11.17 -17.33 -0.19 -0.14 16 13 N -0.53 -12.79 9.54 -11.86 -0.11 -12.90 16 14 C 0.30 7.24 7.52 -155.03 -1.17 6.07 16 15 N -0.73 -14.31 5.10 -59.97 -0.31 -14.62 16 16 C 0.12 2.10 4.86 -4.04 -0.02 2.09 16 17 C 0.12 1.68 0.72 -90.44 -0.07 1.61 16 18 O -0.56 -7.73 11.95 -35.23 -0.42 -8.15 16 19 C -0.18 -2.39 4.84 -26.58 -0.13 -2.52 16 20 C 0.07 0.80 6.69 37.21 0.25 1.05 16 21 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16 22 C 0.07 0.75 6.70 37.21 0.25 1.00 16 23 C -0.14 -1.66 5.15 -26.59 -0.14 -1.80 16 24 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 25 H 0.13 3.27 6.25 -52.49 -0.33 2.94 16 26 H 0.09 1.96 8.06 -52.48 -0.42 1.53 16 27 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 28 H 0.40 7.29 4.62 -40.82 -0.19 7.10 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.38 4.75 8.20 45.56 0.37 5.12 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.11 6.71 -51.93 -0.35 0.76 16 34 H 0.05 0.65 7.82 -51.93 -0.41 0.24 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.00 8.14 -51.94 -0.42 0.57 16 LS Contribution 314.52 15.07 4.74 4.74 Total: -1.00 -28.29 314.52 -8.45 -36.75 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -4.59 Total: 16.88 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.96 Total: -10.61 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.19 Total: -46.84 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.80 Total: -13.66 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.29 -8.45 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167540967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.829 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds