Wall clock time and date at job start Tue Mar 31 2020 00:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86806 * 120.00004 * 2 1 4 4 H 1.48500 * 109.47036 * 239.99701 * 3 2 1 5 5 H 1.48494 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47054 * 120.00082 * 3 2 1 7 7 C 1.39953 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99992 * 163.96836 * 7 2 1 9 9 C 1.41013 * 119.99888 * 343.96437 * 7 2 1 10 10 C 1.40999 * 120.70704 * 334.86516 * 9 7 2 11 11 C 1.38005 * 118.28222 * 180.02562 * 10 9 7 12 12 C 1.38679 * 119.62899 * 0.28081 * 11 10 9 13 13 N 1.31976 * 121.44405 * 359.39626 * 12 11 10 14 14 C 1.32260 * 121.86471 * 0.63571 * 13 12 11 15 15 N 1.38093 * 119.90591 * 179.67474 * 14 13 12 16 16 C 1.46498 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.53005 * 109.46979 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.54487 * 64.99483 * 17 16 15 19 19 C 1.53176 * 109.53899 * 304.81757 * 17 16 15 20 20 C 1.53108 * 109.15476 * 183.23817 * 19 17 16 21 21 O 1.42907 * 109.48207 * 57.48067 * 20 19 17 22 22 C 1.42903 * 114.09572 * 298.88250 * 21 20 19 23 23 C 1.53097 * 109.41293 * 61.16379 * 22 21 20 24 24 H 0.97006 * 120.00402 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.85922 * 0.02562 * 10 9 7 26 26 H 1.08003 * 120.19152 * 180.02562 * 11 10 9 27 27 H 1.08004 * 119.27863 * 179.71989 * 12 11 10 28 28 H 0.97000 * 119.99897 * 179.97438 * 15 14 13 29 29 H 1.08994 * 109.46807 * 299.98799 * 16 15 14 30 30 H 1.08997 * 109.47598 * 59.99102 * 16 15 14 31 31 H 0.96701 * 114.00077 * 300.00624 * 18 17 16 32 32 H 1.08994 * 109.53046 * 303.05843 * 19 17 16 33 33 H 1.09006 * 109.52562 * 63.25159 * 19 17 16 34 34 H 1.08995 * 109.40930 * 297.49976 * 20 19 17 35 35 H 1.09001 * 109.49087 * 177.50620 * 20 19 17 36 36 H 1.09000 * 109.48161 * 301.18117 * 22 21 20 37 37 H 1.09000 * 109.49343 * 181.14956 * 22 21 20 38 38 H 1.09004 * 109.51794 * 182.48621 * 23 22 21 39 39 H 1.08988 * 109.57451 * 62.32685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0084 -1.2120 -0.0005 8 1 3.0568 -1.2301 -0.2588 9 6 1.3444 -2.4096 0.3363 10 6 0.1966 -2.3908 1.1550 11 6 -0.4133 -3.5922 1.4536 12 6 0.1147 -4.7725 0.9523 13 7 1.1864 -4.7748 0.1819 14 6 1.8169 -3.6577 -0.1404 15 7 2.9388 -3.7078 -0.9441 16 6 3.4293 -4.9969 -1.4377 17 6 4.6741 -4.7731 -2.2988 18 8 5.7294 -4.2535 -1.4876 19 6 4.3508 -3.7785 -3.4180 20 6 5.5771 -3.6227 -4.3214 21 8 5.9507 -4.9000 -4.8421 22 6 6.3101 -5.8554 -3.8420 23 6 5.1127 -6.1025 -2.9207 24 1 -0.4851 0.8401 -0.0004 25 1 -0.1951 -1.4603 1.5385 26 1 -1.2945 -3.6136 2.0777 27 1 -0.3645 -5.7099 1.1933 28 1 3.4021 -2.8893 -1.1816 29 1 3.6821 -5.6372 -0.5927 30 1 2.6545 -5.4751 -2.0370 31 1 5.5208 -3.4097 -1.0639 32 1 3.5120 -4.1512 -4.0057 33 1 4.0918 -2.8128 -2.9836 34 1 6.4034 -3.2103 -3.7425 35 1 5.3388 -2.9499 -5.1452 36 1 7.1460 -5.4721 -3.2569 37 1 6.5999 -6.7910 -4.3202 38 1 5.3981 -6.7974 -2.1309 39 1 4.2894 -6.5242 -3.4970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167540967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:41 Heat of formation + Delta-G solvation = -89.417749 kcal Electronic energy + Delta-G solvation = -22114.074218 eV Core-core repulsion = 18827.152521 eV Total energy + Delta-G solvation = -3286.921697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12411 -40.16739 -37.93037 -35.84135 -35.65986 -33.24851 -32.31558 -32.12166 -30.74201 -27.90484 -27.08400 -24.68784 -24.13483 -23.07323 -22.25192 -21.10810 -19.15275 -18.69892 -17.61047 -17.29275 -17.06028 -16.87710 -16.41733 -15.93545 -15.65017 -15.54982 -15.46638 -14.81144 -14.49932 -14.31372 -13.96746 -13.71040 -13.49654 -13.26520 -13.21206 -13.08762 -12.88212 -12.66753 -12.29702 -12.22356 -11.89175 -11.64992 -11.40833 -11.13581 -11.03828 -10.74117 -10.38992 -10.00738 -9.83594 -8.65978 -8.34468 -6.17154 0.92175 1.20794 1.41525 1.50973 1.55716 2.21535 2.66404 2.83565 2.95579 3.16224 3.65000 3.67630 3.77595 3.82991 4.02883 4.29671 4.31231 4.49204 4.54787 4.62240 4.63900 4.71145 4.76248 4.78632 4.86892 4.91597 5.00823 5.06991 5.08177 5.21076 5.25037 5.30715 5.76726 5.90474 6.08219 6.24298 6.36350 6.60776 6.73080 6.80063 6.88792 7.10315 7.90073 8.37614 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.005771 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.322412 B = 4851.056899 C = 6188.517042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.478 4.478 8 H 0.085 0.915 9 C 0.003 3.997 10 C -0.152 4.152 11 C -0.197 4.197 12 C -0.004 4.004 13 N -0.544 5.544 14 C 0.295 3.705 15 N -0.721 5.721 16 C 0.130 3.870 17 C 0.131 3.869 18 O -0.561 6.561 19 C -0.177 4.177 20 C 0.068 3.932 21 O -0.399 6.399 22 C 0.066 3.934 23 C -0.138 4.138 24 H 0.286 0.714 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.147 0.853 28 H 0.403 0.597 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.384 0.616 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.759 -4.163 -5.872 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.509 4.509 8 H 0.103 0.897 9 C -0.004 4.004 10 C -0.179 4.179 11 C -0.219 4.219 12 C -0.157 4.157 13 N -0.263 5.263 14 C 0.056 3.944 15 N -0.362 5.362 16 C 0.005 3.995 17 C 0.090 3.910 18 O -0.368 6.368 19 C -0.216 4.216 20 C -0.009 4.009 21 O -0.319 6.319 22 C -0.011 4.011 23 C -0.176 4.176 24 H 0.096 0.904 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.165 0.835 28 H 0.241 0.759 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.233 0.767 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.141 -5.593 -6.606 13.333 hybrid contribution -0.895 2.405 1.035 2.767 sum 9.246 -3.188 -5.571 11.255 Atomic orbital electron populations 1.69873 1.09056 1.30363 1.36441 1.26670 0.95386 1.04272 0.91610 0.85286 0.78691 0.75874 0.80118 1.17846 1.20080 1.18714 1.19367 0.97404 0.91321 1.42824 0.89705 1.18279 0.95297 0.92494 0.94319 1.21395 0.99141 0.97032 1.00294 1.21659 1.01910 0.93838 1.04489 1.21899 0.95272 0.97301 1.01234 1.66657 1.11490 1.29758 1.18346 1.18702 0.91298 0.89404 0.95008 1.43665 1.29078 1.07921 1.55500 1.21596 0.94892 0.86207 0.96792 1.21394 0.85642 0.94945 0.89010 1.86453 1.41074 1.42868 1.66403 1.22792 1.00067 1.00531 0.98164 1.22555 0.95198 0.85253 0.97881 1.87880 1.87363 1.22756 1.33854 1.22609 0.95314 0.93254 0.89875 1.22148 1.00577 0.94861 0.99968 0.90382 0.87200 0.86354 0.83536 0.75858 0.93591 0.93460 0.76715 0.90754 0.90470 0.92226 0.87741 0.92588 0.86816 0.89291 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.09 10.93 21.83 0.24 -41.86 16 2 C 0.03 1.66 5.20 85.25 0.44 2.10 16 3 Si 0.98 35.93 29.59 68.60 2.03 37.96 16 4 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 5 H -0.28 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 7 C -0.48 -23.57 8.52 23.37 0.20 -23.37 16 8 H 0.08 3.80 6.69 -2.91 -0.02 3.78 16 9 C 0.00 0.16 5.60 -21.06 -0.12 0.05 16 10 C -0.15 -7.95 8.79 22.89 0.20 -7.75 16 11 C -0.20 -9.22 10.08 22.32 0.22 -9.00 16 12 C 0.00 -0.19 11.17 84.78 0.95 0.76 16 13 N -0.54 -26.15 9.54 -191.45 -1.83 -27.98 16 14 C 0.29 14.20 7.52 134.06 1.01 15.21 16 15 N -0.72 -28.13 5.10 -343.66 -1.75 -29.89 16 16 C 0.13 4.35 4.86 86.38 0.42 4.77 16 17 C 0.13 3.44 0.72 -10.67 -0.01 3.43 16 18 O -0.56 -14.68 11.95 -148.98 -1.78 -16.46 16 19 C -0.18 -4.47 4.84 30.69 0.15 -4.33 16 20 C 0.07 1.52 6.69 72.02 0.48 2.00 16 21 O -0.40 -9.71 10.77 -148.98 -1.60 -11.32 16 22 C 0.07 1.36 6.70 72.01 0.48 1.84 16 23 C -0.14 -3.08 5.15 30.68 0.16 -2.92 16 24 H 0.29 13.26 8.30 -92.70 -0.77 12.49 16 25 H 0.11 5.97 6.25 -2.91 -0.02 5.95 16 26 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 27 H 0.15 5.67 8.06 -2.91 -0.02 5.65 16 28 H 0.40 14.63 4.62 -92.71 -0.43 14.20 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.38 9.12 8.20 -74.06 -0.61 8.51 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.01 6.71 -2.38 -0.02 1.99 16 34 H 0.06 1.29 7.82 -2.39 -0.02 1.27 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 1.19 7.82 -2.39 -0.02 1.17 16 37 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -60.09 314.52 -0.07 -60.16 By element: Atomic # 1 Polarization: 46.55 SS G_CDS: 0.04 Total: 46.59 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 4.59 Total: -17.22 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -3.34 Total: -99.72 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -3.38 Total: -27.78 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Total: -60.09 -0.07 -60.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167540967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.262 kcal (2) G-P(sol) polarization free energy of solvation -60.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds