Wall clock time and date at job start Tue Mar 31 2020 00:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48501 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47687 * 300.00549 * 3 2 1 6 6 H 1.48503 * 109.46573 * 60.00530 * 3 2 1 7 7 C 1.39869 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00022 * 163.32496 * 7 2 1 9 9 C 1.41204 * 120.00264 * 343.32206 * 7 2 1 10 10 C 1.41329 * 120.56556 * 335.72428 * 9 7 2 11 11 C 1.36566 * 118.40319 * 179.97438 * 10 9 7 12 12 C 1.39705 * 119.49506 * 359.97438 * 11 10 9 13 13 N 1.38370 * 119.42634 * 180.02562 * 12 11 10 14 14 C 1.46501 * 120.00534 * 0.02562 * 13 12 11 15 15 C 1.52992 * 109.47472 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.54336 * 64.99648 * 15 14 13 17 17 C 1.53177 * 109.54422 * 304.82550 * 15 14 13 18 18 C 1.53109 * 109.15849 * 183.24023 * 17 15 14 19 19 O 1.42905 * 109.48450 * 57.47314 * 18 17 15 20 20 C 1.42908 * 114.09774 * 298.88524 * 19 18 17 21 21 C 1.53093 * 109.41012 * 61.16369 * 20 19 18 22 22 N 1.32742 * 121.14054 * 0.27795 * 12 11 10 23 23 C 1.31486 * 121.72787 * 359.43365 * 22 12 11 24 24 H 0.97001 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.79604 * 359.95207 * 10 9 7 26 26 H 1.07997 * 120.24614 * 180.02562 * 11 10 9 27 27 H 0.97002 * 119.99644 * 179.97438 * 13 12 11 28 28 H 1.09006 * 109.47055 * 59.99280 * 14 13 12 29 29 H 1.08997 * 109.46764 * 299.99996 * 14 13 12 30 30 H 0.96695 * 114.00288 * 300.00530 * 16 15 14 31 31 H 1.09001 * 109.51815 * 303.05353 * 17 15 14 32 32 H 1.08995 * 109.52547 * 63.24356 * 17 15 14 33 33 H 1.09003 * 109.40475 * 297.49095 * 18 17 15 34 34 H 1.08997 * 109.49598 * 177.50620 * 18 17 15 35 35 H 1.09000 * 109.47870 * 301.18234 * 20 19 18 36 36 H 1.08998 * 109.48858 * 181.14833 * 20 19 18 37 37 H 1.09003 * 109.52076 * 182.48482 * 21 20 19 38 38 H 1.08997 * 109.57564 * 62.32591 * 21 20 19 39 39 H 1.07997 * 119.81779 * 180.26067 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8842 2.3966 -1.2124 6 1 1.8842 2.3963 1.2126 7 6 2.0083 -1.2113 -0.0005 8 1 3.0542 -1.2309 -0.2689 9 6 1.3468 -2.4086 0.3499 10 6 0.1940 -2.3802 1.1670 11 6 -0.4110 -3.5644 1.4781 12 6 0.1203 -4.7587 0.9850 13 7 -0.4942 -5.9576 1.3007 14 6 -1.6915 -5.9672 2.1449 15 6 -2.1676 -7.4082 2.3384 16 8 -1.1841 -8.1424 3.0703 17 6 -2.3843 -8.0642 0.9712 18 6 -2.9373 -9.4775 1.1740 19 8 -4.1508 -9.4111 1.9259 20 6 -3.9982 -8.8507 3.2316 21 6 -3.4900 -7.4116 3.1114 22 7 1.2072 -4.7635 0.2229 23 6 1.8234 -3.6507 -0.1098 24 1 -0.4850 0.8400 0.0004 25 1 -0.1988 -1.4446 1.5367 26 1 -1.2938 -3.5773 2.1000 27 1 -0.1325 -6.7917 0.9625 28 1 -2.4790 -5.3860 1.6650 29 1 -1.4559 -5.5287 3.1145 30 1 -0.3207 -8.1836 2.6368 31 1 -3.0965 -7.4752 0.3934 32 1 -1.4353 -8.1161 0.4376 33 1 -2.2064 -10.0781 1.7156 34 1 -3.1352 -9.9333 0.2040 35 1 -3.2813 -9.4431 3.8000 36 1 -4.9604 -8.8548 3.7438 37 1 -3.3310 -6.9971 4.1069 38 1 -4.2249 -6.8081 2.5786 39 1 2.7031 -3.6903 -0.7350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167541240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:20 Heat of formation + Delta-G solvation = -68.715594 kcal Electronic energy + Delta-G solvation = -21490.711628 eV Core-core repulsion = 18204.687643 eV Total energy + Delta-G solvation = -3286.023984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17148 -38.51533 -36.97920 -34.77222 -33.50875 -32.14043 -31.28927 -30.62984 -29.20983 -27.05439 -24.70160 -23.80068 -22.90157 -21.72474 -20.66071 -20.16792 -17.32330 -17.15564 -16.72299 -16.18593 -15.82777 -15.48915 -15.03665 -14.97455 -14.61844 -14.29106 -13.72358 -13.31218 -13.26822 -13.01799 -12.69379 -12.51465 -12.12794 -11.95141 -11.78892 -11.58357 -11.47276 -11.25214 -11.08622 -10.96694 -10.58935 -10.56310 -10.16306 -9.79914 -9.51330 -9.46406 -8.79307 -8.28194 -8.06154 -6.88470 -6.65193 -4.22868 2.71782 2.95184 3.07826 3.13119 3.25267 3.72398 3.91101 3.95440 4.03887 4.55871 4.61915 4.65834 4.69699 4.85749 5.10538 5.30115 5.41516 5.43343 5.51749 5.61859 5.66019 5.77148 5.81382 5.91035 5.94537 6.06626 6.10749 6.44187 6.58636 6.82712 7.04190 7.14669 7.29167 7.36408 7.49014 7.69801 7.88628 8.19553 8.36533 8.59498 8.81692 8.86892 9.66276 10.20740 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042926 B = 0.003341 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.127017 B = 8377.643142 C = 8657.240629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.456 4.456 8 H 0.078 0.922 9 C 0.031 3.969 10 C -0.094 4.094 11 C -0.201 4.201 12 C 0.276 3.724 13 N -0.744 5.744 14 C 0.121 3.879 15 C 0.126 3.874 16 O -0.556 6.556 17 C -0.180 4.180 18 C 0.066 3.934 19 O -0.386 6.386 20 C 0.065 3.935 21 C -0.139 4.139 22 N -0.522 5.522 23 C 0.010 3.990 24 H 0.279 0.721 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.384 0.616 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.379 0.621 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.607 -11.735 4.867 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.026 3.974 10 C -0.120 4.120 11 C -0.225 4.225 12 C 0.044 3.956 13 N -0.386 5.386 14 C -0.006 4.006 15 C 0.085 3.915 16 O -0.363 6.363 17 C -0.218 4.218 18 C -0.011 4.011 19 O -0.305 6.305 20 C -0.011 4.011 21 C -0.178 4.178 22 N -0.237 5.237 23 C -0.148 4.148 24 H 0.089 0.911 25 H 0.145 0.855 26 H 0.114 0.886 27 H 0.218 0.782 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.227 0.773 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.274 -12.376 4.999 15.200 hybrid contribution 0.851 1.709 -0.237 1.924 sum -6.423 -10.666 4.762 13.330 Atomic orbital electron populations 1.69818 1.07506 1.28958 1.36956 1.25860 0.94734 1.01240 0.92453 0.86261 0.80945 0.81044 0.78453 1.18445 1.20096 1.19854 1.19370 0.97626 0.90826 1.40934 0.90346 1.18371 0.93350 0.93613 0.92084 1.21322 0.97113 0.96508 0.97094 1.20806 1.02411 0.92851 1.06415 1.17692 0.93114 0.85112 0.99730 1.43519 1.30608 1.05625 1.58799 1.21686 0.88377 0.95384 0.95109 1.21406 0.89112 0.90227 0.90799 1.86478 1.23658 1.75716 1.50445 1.22835 1.03074 0.98083 0.97815 1.22508 0.86838 0.95604 0.96173 1.87904 1.32038 1.82763 1.27758 1.22502 1.01414 0.92571 0.84648 1.22132 0.94793 0.98982 1.01847 1.66503 1.08732 1.32921 1.15526 1.22190 1.01621 0.87305 1.03659 0.91057 0.85454 0.88602 0.78168 0.92352 0.92226 0.77296 0.89839 0.90161 0.92683 0.89029 0.92335 0.88961 0.89803 0.89499 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.62 10.91 55.54 0.61 -20.01 16 2 C 0.07 1.82 5.19 -17.34 -0.09 1.73 16 3 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -11.93 9.07 -37.85 -0.34 -12.28 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.03 0.82 5.59 -106.65 -0.60 0.22 16 10 C -0.09 -2.40 8.74 -39.01 -0.34 -2.74 16 11 C -0.20 -4.64 9.24 -39.64 -0.37 -5.01 16 12 C 0.28 6.13 7.64 -155.13 -1.19 4.95 16 13 N -0.74 -12.70 5.20 -60.36 -0.31 -13.02 16 14 C 0.12 1.73 4.05 -4.05 -0.02 1.71 16 15 C 0.13 1.45 0.72 -90.44 -0.07 1.39 16 16 O -0.56 -6.56 11.95 -35.23 -0.42 -6.98 16 17 C -0.18 -1.97 4.84 -26.58 -0.13 -2.10 16 18 C 0.07 0.67 6.69 37.21 0.25 0.92 16 19 O -0.39 -4.53 10.77 -35.23 -0.38 -4.91 16 20 C 0.07 0.66 6.70 37.21 0.25 0.91 16 21 C -0.14 -1.44 5.15 -26.59 -0.14 -1.58 16 22 N -0.52 -12.52 10.37 -11.79 -0.12 -12.64 16 23 C 0.01 0.26 10.97 -16.75 -0.18 0.08 16 24 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 25 H 0.13 3.34 6.20 -52.49 -0.33 3.01 16 26 H 0.10 1.98 6.64 -52.49 -0.35 1.63 16 27 H 0.38 5.94 6.53 -40.82 -0.27 5.67 16 28 H 0.06 0.86 7.90 -51.93 -0.41 0.45 16 29 H 0.06 0.90 7.90 -51.93 -0.41 0.49 16 30 H 0.38 3.88 8.20 45.56 0.37 4.25 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.86 6.70 -51.93 -0.35 0.52 16 33 H 0.05 0.55 7.82 -51.93 -0.41 0.14 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.13 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -29.01 315.38 -8.50 -37.50 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -4.63 Total: 13.62 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.95 Total: -11.81 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.17 Total: -45.67 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.80 Total: -11.89 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.01 -8.50 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167541240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.213 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds