Wall clock time and date at job start Tue Mar 31 2020 00:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48501 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47687 * 300.00549 * 3 2 1 6 6 H 1.48503 * 109.46573 * 60.00530 * 3 2 1 7 7 C 1.39869 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00022 * 163.32496 * 7 2 1 9 9 C 1.41204 * 120.00264 * 343.32206 * 7 2 1 10 10 C 1.41329 * 120.56556 * 335.72428 * 9 7 2 11 11 C 1.36566 * 118.40319 * 179.97438 * 10 9 7 12 12 C 1.39705 * 119.49506 * 359.97438 * 11 10 9 13 13 N 1.38370 * 119.42634 * 180.02562 * 12 11 10 14 14 C 1.46501 * 120.00534 * 0.02562 * 13 12 11 15 15 C 1.52992 * 109.47472 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.54336 * 64.99648 * 15 14 13 17 17 C 1.53177 * 109.54422 * 304.82550 * 15 14 13 18 18 C 1.53109 * 109.15849 * 183.24023 * 17 15 14 19 19 O 1.42905 * 109.48450 * 57.47314 * 18 17 15 20 20 C 1.42908 * 114.09774 * 298.88524 * 19 18 17 21 21 C 1.53093 * 109.41012 * 61.16369 * 20 19 18 22 22 N 1.32742 * 121.14054 * 0.27795 * 12 11 10 23 23 C 1.31486 * 121.72787 * 359.43365 * 22 12 11 24 24 H 0.97001 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.79604 * 359.95207 * 10 9 7 26 26 H 1.07997 * 120.24614 * 180.02562 * 11 10 9 27 27 H 0.97002 * 119.99644 * 179.97438 * 13 12 11 28 28 H 1.09006 * 109.47055 * 59.99280 * 14 13 12 29 29 H 1.08997 * 109.46764 * 299.99996 * 14 13 12 30 30 H 0.96695 * 114.00288 * 300.00530 * 16 15 14 31 31 H 1.09001 * 109.51815 * 303.05353 * 17 15 14 32 32 H 1.08995 * 109.52547 * 63.24356 * 17 15 14 33 33 H 1.09003 * 109.40475 * 297.49095 * 18 17 15 34 34 H 1.08997 * 109.49598 * 177.50620 * 18 17 15 35 35 H 1.09000 * 109.47870 * 301.18234 * 20 19 18 36 36 H 1.08998 * 109.48858 * 181.14833 * 20 19 18 37 37 H 1.09003 * 109.52076 * 182.48482 * 21 20 19 38 38 H 1.08997 * 109.57564 * 62.32591 * 21 20 19 39 39 H 1.07997 * 119.81779 * 180.26067 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8842 2.3966 -1.2124 6 1 1.8842 2.3963 1.2126 7 6 2.0083 -1.2113 -0.0005 8 1 3.0542 -1.2309 -0.2689 9 6 1.3468 -2.4086 0.3499 10 6 0.1940 -2.3802 1.1670 11 6 -0.4110 -3.5644 1.4781 12 6 0.1203 -4.7587 0.9850 13 7 -0.4942 -5.9576 1.3007 14 6 -1.6915 -5.9672 2.1449 15 6 -2.1676 -7.4082 2.3384 16 8 -1.1841 -8.1424 3.0703 17 6 -2.3843 -8.0642 0.9712 18 6 -2.9373 -9.4775 1.1740 19 8 -4.1508 -9.4111 1.9259 20 6 -3.9982 -8.8507 3.2316 21 6 -3.4900 -7.4116 3.1114 22 7 1.2072 -4.7635 0.2229 23 6 1.8234 -3.6507 -0.1098 24 1 -0.4850 0.8400 0.0004 25 1 -0.1988 -1.4446 1.5367 26 1 -1.2938 -3.5773 2.1000 27 1 -0.1325 -6.7917 0.9625 28 1 -2.4790 -5.3860 1.6650 29 1 -1.4559 -5.5287 3.1145 30 1 -0.3207 -8.1836 2.6368 31 1 -3.0965 -7.4752 0.3934 32 1 -1.4353 -8.1161 0.4376 33 1 -2.2064 -10.0781 1.7156 34 1 -3.1352 -9.9333 0.2040 35 1 -3.2813 -9.4431 3.8000 36 1 -4.9604 -8.8548 3.7438 37 1 -3.3310 -6.9971 4.1069 38 1 -4.2249 -6.8081 2.5786 39 1 2.7031 -3.6903 -0.7350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167541240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:20 Heat of formation + Delta-G solvation = -88.707308 kcal Electronic energy + Delta-G solvation = -21491.578533 eV Core-core repulsion = 18204.687643 eV Total energy + Delta-G solvation = -3286.890890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16226 -40.23996 -38.01528 -36.35013 -35.12957 -33.18771 -32.51740 -32.13542 -30.93464 -28.38357 -26.35437 -24.71565 -24.21996 -23.40057 -22.31919 -21.11456 -19.21117 -18.59288 -17.63083 -17.37538 -17.01767 -16.90251 -16.51471 -15.99076 -15.70468 -15.59600 -15.41542 -14.76149 -14.70077 -14.25386 -13.96601 -13.72426 -13.49248 -13.47793 -13.25996 -12.99707 -12.89405 -12.78559 -12.29748 -12.24811 -11.90090 -11.65442 -11.42196 -11.24562 -11.04776 -10.50354 -10.41076 -10.18881 -9.95734 -8.70035 -8.44411 -6.15644 0.86554 1.09600 1.41488 1.54008 1.56597 2.24037 2.51055 2.80203 2.95466 3.14684 3.60275 3.65593 3.75362 3.79979 4.02514 4.18911 4.29831 4.45561 4.49646 4.60547 4.62985 4.65359 4.70777 4.76408 4.78519 4.86478 4.94884 5.04567 5.06343 5.22960 5.26997 5.38929 5.53411 5.84504 5.96786 6.24551 6.44097 6.55703 6.64311 6.80257 6.90915 7.07683 7.80102 8.38205 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042926 B = 0.003341 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.127017 B = 8377.643142 C = 8657.240629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.491 4.491 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.108 4.108 11 C -0.207 4.207 12 C 0.284 3.716 13 N -0.730 5.730 14 C 0.119 3.881 15 C 0.134 3.866 16 O -0.561 6.561 17 C -0.177 4.177 18 C 0.066 3.934 19 O -0.401 6.401 20 C 0.065 3.935 21 C -0.140 4.140 22 N -0.533 5.533 23 C -0.002 4.002 24 H 0.286 0.714 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.395 0.605 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.385 0.615 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 -12.334 5.376 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.522 4.522 8 H 0.096 0.904 9 C -0.005 4.005 10 C -0.135 4.135 11 C -0.231 4.231 12 C 0.050 3.950 13 N -0.371 5.371 14 C -0.006 4.006 15 C 0.093 3.907 16 O -0.368 6.368 17 C -0.215 4.215 18 C -0.011 4.011 19 O -0.320 6.320 20 C -0.011 4.011 21 C -0.178 4.178 22 N -0.249 5.249 23 C -0.159 4.159 24 H 0.097 0.903 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.231 0.769 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.234 0.766 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.834 -13.022 5.513 16.166 hybrid contribution 0.938 1.743 -0.354 2.011 sum -6.895 -11.279 5.159 14.191 Atomic orbital electron populations 1.69865 1.08872 1.30284 1.37431 1.26685 0.95498 1.04356 0.91459 0.85146 0.79415 0.76333 0.78726 1.18194 1.19341 1.19093 1.19604 0.97887 0.91891 1.42791 0.90408 1.18656 0.94278 0.94414 0.93169 1.21334 0.97536 0.96988 0.97670 1.21022 1.03026 0.92438 1.06596 1.18032 0.92284 0.86675 0.98002 1.43561 1.30801 1.04382 1.58324 1.21863 0.87026 0.97598 0.94130 1.21336 0.89553 0.88304 0.91526 1.86483 1.24132 1.75486 1.50719 1.22798 1.02993 0.98491 0.97200 1.22577 0.86596 0.95076 0.96824 1.87891 1.32746 1.82924 1.28461 1.22601 1.02429 0.91962 0.84143 1.22177 0.94048 0.99537 1.02067 1.66597 1.09514 1.32396 1.16363 1.22375 1.02170 0.87398 1.03956 0.90320 0.86697 0.86286 0.76943 0.92444 0.92621 0.76565 0.90558 0.90013 0.92289 0.87767 0.92630 0.87060 0.89158 0.89031 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.44 10.91 21.82 0.24 -43.20 16 2 C 0.03 1.66 5.19 85.23 0.44 2.10 16 3 Si 0.98 38.04 29.59 68.60 2.03 40.07 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.49 -26.26 9.07 23.39 0.21 -26.05 16 8 H 0.08 4.00 7.90 -2.91 -0.02 3.98 16 9 C 0.00 0.00 5.59 -21.18 -0.12 -0.12 16 10 C -0.11 -5.65 8.74 22.64 0.20 -5.46 16 11 C -0.21 -9.49 9.24 22.23 0.21 -9.29 16 12 C 0.28 12.42 7.64 133.31 1.02 13.44 16 13 N -0.73 -23.72 5.20 -344.87 -1.79 -25.51 16 14 C 0.12 3.19 4.05 86.38 0.35 3.54 16 15 C 0.13 2.82 0.72 -10.68 -0.01 2.81 16 16 O -0.56 -11.99 11.95 -148.98 -1.78 -13.77 16 17 C -0.18 -3.52 4.84 30.69 0.15 -3.37 16 18 C 0.07 1.21 6.69 72.02 0.48 1.69 16 19 O -0.40 -8.55 10.77 -148.98 -1.60 -10.15 16 20 C 0.07 1.16 6.70 72.01 0.48 1.64 16 21 C -0.14 -2.59 5.15 30.68 0.16 -2.43 16 22 N -0.53 -25.41 10.37 -191.21 -1.98 -27.40 16 23 C 0.00 -0.10 10.97 85.36 0.94 0.84 16 24 H 0.29 13.42 8.30 -92.71 -0.77 12.66 16 25 H 0.12 6.20 6.20 -2.91 -0.02 6.18 16 26 H 0.12 4.79 6.64 -2.91 -0.02 4.77 16 27 H 0.39 11.44 6.53 -92.71 -0.61 10.83 16 28 H 0.06 1.59 7.90 -2.38 -0.02 1.58 16 29 H 0.06 1.58 7.90 -2.39 -0.02 1.56 16 30 H 0.39 7.05 8.20 -74.06 -0.61 6.44 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.59 6.70 -2.39 -0.02 1.57 16 33 H 0.06 1.05 7.82 -2.39 -0.02 1.03 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.03 7.82 -2.39 -0.02 1.01 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.14 6.41 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -61.80 315.38 -0.52 -62.32 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -0.13 Total: 38.29 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.51 Total: -20.65 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -3.54 Total: -96.11 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -3.38 Total: -23.92 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -61.80 -0.52 -62.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167541240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.388 kcal (2) G-P(sol) polarization free energy of solvation -61.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds