Wall clock time and date at job start Tue Mar 31 2020 00:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48504 * 109.47094 * 274.75602 * 3 2 1 5 5 H 1.48494 * 109.47426 * 34.75839 * 3 2 1 6 6 H 1.48502 * 109.46960 * 154.75771 * 3 2 1 7 7 C 1.40357 * 119.99504 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99502 * 162.96855 * 7 2 1 9 9 C 1.40179 * 120.00350 * 342.95982 * 7 2 1 10 10 C 1.39061 * 119.74215 * 156.42219 * 9 7 2 11 11 C 1.42025 * 118.74260 * 180.02562 * 10 9 7 12 12 N 1.32214 * 120.83372 * 180.02562 * 11 10 9 13 13 C 1.46506 * 119.99968 * 185.90912 * 12 11 10 14 14 C 1.53008 * 109.46750 * 116.67121 * 13 12 11 15 15 O 1.42897 * 109.54087 * 299.99922 * 14 13 12 16 16 C 1.53171 * 109.54437 * 60.17633 * 14 13 12 17 17 C 1.53278 * 109.06525 * 176.84826 * 16 14 13 18 18 O 1.42902 * 109.46180 * 302.45013 * 17 16 14 19 19 C 1.42904 * 114.10120 * 61.15490 * 18 17 16 20 20 C 1.53100 * 109.41261 * 298.84342 * 19 18 17 21 21 C 1.46914 * 118.33422 * 0.27054 * 11 10 9 22 22 C 1.34381 * 119.36790 * 359.43570 * 21 11 10 23 23 N 1.36424 * 121.21788 * 0.60274 * 22 21 11 24 24 H 0.96994 * 119.09110 * 179.66741 * 23 22 21 25 25 H 0.96995 * 119.99902 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.63267 * 0.02562 * 10 9 7 27 27 H 1.08999 * 109.47203 * 356.67071 * 13 12 11 28 28 H 1.08998 * 109.46999 * 236.66670 * 13 12 11 29 29 H 0.96692 * 114.00249 * 60.00418 * 15 14 13 30 30 H 1.09003 * 109.52512 * 296.84146 * 16 14 13 31 31 H 1.09003 * 109.52245 * 57.02955 * 16 14 13 32 32 H 1.08998 * 109.46290 * 182.45185 * 17 16 14 33 33 H 1.09006 * 109.46608 * 62.44877 * 17 16 14 34 34 H 1.09000 * 109.48640 * 178.86379 * 19 18 17 35 35 H 1.09002 * 109.49052 * 58.82625 * 19 18 17 36 36 H 1.09000 * 109.52040 * 297.70612 * 20 19 18 37 37 H 1.09001 * 109.57615 * 177.54499 * 20 19 18 38 38 H 1.08005 * 120.31430 * 179.72575 * 21 11 10 39 39 H 1.07996 * 119.39374 * 180.25151 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.3868 2.1044 -1.3953 5 1 1.4913 2.6215 0.7982 6 1 3.5841 1.4131 0.5971 7 6 2.0075 -1.2156 -0.0005 8 1 3.0520 -1.2360 -0.2745 9 6 1.3527 -2.4031 0.3547 10 6 1.8452 -3.6234 -0.0947 11 6 1.1649 -4.8133 0.2775 12 7 1.5974 -5.9957 -0.1261 13 6 0.8120 -7.1992 0.1585 14 6 0.3517 -7.8307 -1.1570 15 8 -0.4537 -6.8971 -1.8793 16 6 1.5740 -8.2113 -1.9980 17 6 1.1031 -8.9135 -3.2765 18 8 0.3230 -10.0597 -2.9304 19 6 -0.8571 -9.7584 -2.1829 20 6 -0.4660 -9.0918 -0.8613 21 6 -0.0346 -4.6969 1.1176 22 6 -0.4444 -3.4808 1.5165 23 7 0.2258 -2.3520 1.1455 24 1 -0.0999 -1.4896 1.4471 25 1 -0.4850 0.8400 0.0004 26 1 2.7283 -3.6657 -0.7150 27 1 -0.0586 -6.9318 0.7574 28 1 1.4262 -7.9122 0.7084 29 1 0.0026 -6.0745 -2.1028 30 1 2.1316 -7.3115 -2.2583 31 1 2.2134 -8.8848 -1.4273 32 1 1.9695 -9.2261 -3.8593 33 1 0.4970 -8.2260 -3.8664 34 1 -1.4027 -10.6795 -1.9779 35 1 -1.4891 -9.0818 -2.7582 36 1 0.1323 -9.7830 -0.2678 37 1 -1.3656 -8.8213 -0.3085 38 1 -0.5792 -5.5807 1.4158 39 1 -1.3238 -3.3951 2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167551349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:28 Heat of formation + Delta-G solvation = -66.848066 kcal Electronic energy + Delta-G solvation = -21728.981490 eV Core-core repulsion = 18443.038488 eV Total energy + Delta-G solvation = -3285.943002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.49903 -38.58181 -36.40586 -34.52327 -33.39008 -31.84843 -30.84134 -30.67885 -28.99070 -26.78689 -25.38171 -23.37919 -22.48645 -21.50615 -20.17499 -19.57745 -18.04988 -16.68115 -16.19450 -15.93803 -15.75459 -15.44103 -15.01928 -14.59400 -14.43246 -13.91969 -13.78080 -13.45314 -12.95989 -12.79982 -12.61578 -12.07111 -11.93747 -11.64291 -11.55195 -11.28202 -11.17243 -11.02361 -11.01473 -10.74193 -10.56871 -10.31168 -10.12073 -9.73268 -9.69000 -9.51724 -8.89314 -8.28985 -7.57737 -7.34737 -6.02296 -4.85348 2.54524 2.68845 2.84622 2.89650 3.10480 3.60330 4.09362 4.21212 4.55847 4.68715 5.02084 5.17319 5.27844 5.30107 5.43810 5.52943 5.57338 5.69144 5.85868 5.87949 5.94636 6.13153 6.19055 6.25674 6.30532 6.45631 6.59148 6.63769 6.64750 6.73191 6.76668 6.83322 7.34431 7.41075 7.60202 7.70890 7.90913 8.18745 8.22397 8.23730 8.74214 8.86069 9.63834 9.65756 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034259 B = 0.003758 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.112818 B = 7449.119359 C = 7748.504391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.077 3.923 3 Si 0.923 3.077 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.333 3.667 10 C -0.360 4.360 11 C 0.287 3.713 12 N -0.676 5.676 13 C 0.039 3.961 14 C 0.139 3.861 15 O -0.565 6.565 16 C -0.164 4.164 17 C 0.062 3.938 18 O -0.391 6.391 19 C 0.067 3.933 20 C -0.140 4.140 21 C -0.299 4.299 22 C 0.126 3.874 23 N -0.602 5.602 24 H 0.413 0.587 25 H 0.292 0.708 26 H 0.113 0.887 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.382 0.618 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -4.930 0.409 5.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.142 4.142 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.499 4.499 8 H 0.121 0.879 9 C 0.224 3.776 10 C -0.389 4.389 11 C 0.125 3.875 12 N -0.404 5.404 13 C -0.093 4.093 14 C 0.098 3.902 15 O -0.373 6.373 16 C -0.202 4.202 17 C -0.014 4.014 18 O -0.310 6.310 19 C -0.010 4.010 20 C -0.178 4.178 21 C -0.329 4.329 22 C -0.004 4.004 23 N -0.212 5.212 24 H 0.252 0.748 25 H 0.104 0.896 26 H 0.131 0.869 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.231 0.769 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.516 -5.996 -0.037 6.502 hybrid contribution -0.425 1.828 0.774 2.030 sum -2.941 -4.168 0.737 5.154 Atomic orbital electron populations 1.69360 1.07838 1.30934 1.35703 1.26206 0.94928 1.02435 0.90593 0.86028 0.80687 0.79044 0.79667 1.18966 1.19787 1.17898 1.19530 0.99285 0.89663 1.41456 0.87876 1.17631 0.81517 0.94411 0.84055 1.20225 1.10515 0.88045 1.20108 1.20260 0.87452 0.92827 0.86935 1.73349 1.31345 0.96108 1.39558 1.22341 0.96348 0.96139 0.94495 1.21195 0.89031 0.88025 0.91945 1.86292 1.43115 1.30998 1.76865 1.22655 0.98746 1.01854 0.96920 1.22611 0.94689 0.87734 0.96384 1.87835 1.37055 1.32370 1.73747 1.22457 0.87205 0.99678 0.91667 1.22149 1.00983 0.96229 0.98459 1.22285 1.04306 0.95560 1.10790 1.21245 0.95135 0.87454 0.96563 1.42051 1.25927 1.08491 1.44736 0.74751 0.89617 0.86916 0.94867 0.93541 0.76910 0.89222 0.91289 0.89597 0.92989 0.89640 0.92620 0.90436 0.90804 0.86572 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.28 11.17 55.57 0.62 -16.66 16 2 C 0.08 1.63 5.17 -17.29 -0.09 1.54 16 3 Si 0.92 15.94 29.59 -169.99 -5.03 10.91 16 4 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 5 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 6 H -0.26 -4.45 7.11 56.52 0.40 -4.04 16 7 C -0.47 -10.73 9.03 -38.06 -0.34 -11.08 16 8 H 0.10 2.31 7.91 -52.48 -0.42 1.90 16 9 C 0.33 7.86 6.35 -84.16 -0.53 7.33 16 10 C -0.36 -8.80 9.83 -37.83 -0.37 -9.17 16 11 C 0.29 6.71 6.80 -82.74 -0.56 6.15 16 12 N -0.68 -15.31 9.35 -57.23 -0.54 -15.85 16 13 C 0.04 0.76 5.41 -4.03 -0.02 0.74 16 14 C 0.14 2.45 0.79 -90.43 -0.07 2.37 16 15 O -0.57 -10.71 11.94 -35.23 -0.42 -11.14 16 16 C -0.16 -2.74 4.93 -26.50 -0.13 -2.87 16 17 C 0.06 0.94 6.70 37.30 0.25 1.19 16 18 O -0.39 -6.15 10.77 -35.23 -0.38 -6.53 16 19 C 0.07 0.95 6.69 37.21 0.25 1.20 16 20 C -0.14 -2.11 5.15 -26.59 -0.14 -2.24 16 21 C -0.30 -6.28 9.40 -37.43 -0.35 -6.63 16 22 C 0.13 2.43 11.15 -16.87 -0.19 2.24 16 23 N -0.60 -12.77 4.88 -10.83 -0.05 -12.82 16 24 H 0.41 8.39 6.40 -40.82 -0.26 8.12 16 25 H 0.29 5.62 8.29 -40.82 -0.34 5.28 16 26 H 0.11 2.81 8.06 -52.49 -0.42 2.39 16 27 H 0.03 0.67 5.21 -51.93 -0.27 0.40 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.38 7.52 8.50 45.56 0.39 7.91 16 30 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.12 2.29 5.88 -52.48 -0.31 1.98 16 39 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -25.71 316.94 -7.92 -33.63 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -4.60 Total: 22.91 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.30 Total: -9.24 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.03 Total: -45.33 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.80 Total: -17.66 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: -5.03 Total: 10.91 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.71 -7.92 -33.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167551349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.214 kcal (2) G-P(sol) polarization free energy of solvation -25.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds