Wall clock time and date at job start Tue Mar 31 2020 00:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48504 * 109.47094 * 274.75602 * 3 2 1 5 5 H 1.48494 * 109.47426 * 34.75839 * 3 2 1 6 6 H 1.48502 * 109.46960 * 154.75771 * 3 2 1 7 7 C 1.40357 * 119.99504 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99502 * 162.96855 * 7 2 1 9 9 C 1.40179 * 120.00350 * 342.95982 * 7 2 1 10 10 C 1.39061 * 119.74215 * 156.42219 * 9 7 2 11 11 C 1.42025 * 118.74260 * 180.02562 * 10 9 7 12 12 N 1.32214 * 120.83372 * 180.02562 * 11 10 9 13 13 C 1.46506 * 119.99968 * 185.90912 * 12 11 10 14 14 C 1.53008 * 109.46750 * 116.67121 * 13 12 11 15 15 O 1.42897 * 109.54087 * 299.99922 * 14 13 12 16 16 C 1.53171 * 109.54437 * 60.17633 * 14 13 12 17 17 C 1.53278 * 109.06525 * 176.84826 * 16 14 13 18 18 O 1.42902 * 109.46180 * 302.45013 * 17 16 14 19 19 C 1.42904 * 114.10120 * 61.15490 * 18 17 16 20 20 C 1.53100 * 109.41261 * 298.84342 * 19 18 17 21 21 C 1.46914 * 118.33422 * 0.27054 * 11 10 9 22 22 C 1.34381 * 119.36790 * 359.43570 * 21 11 10 23 23 N 1.36424 * 121.21788 * 0.60274 * 22 21 11 24 24 H 0.96994 * 119.09110 * 179.66741 * 23 22 21 25 25 H 0.96995 * 119.99902 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.63267 * 0.02562 * 10 9 7 27 27 H 1.08999 * 109.47203 * 356.67071 * 13 12 11 28 28 H 1.08998 * 109.46999 * 236.66670 * 13 12 11 29 29 H 0.96692 * 114.00249 * 60.00418 * 15 14 13 30 30 H 1.09003 * 109.52512 * 296.84146 * 16 14 13 31 31 H 1.09003 * 109.52245 * 57.02955 * 16 14 13 32 32 H 1.08998 * 109.46290 * 182.45185 * 17 16 14 33 33 H 1.09006 * 109.46608 * 62.44877 * 17 16 14 34 34 H 1.09000 * 109.48640 * 178.86379 * 19 18 17 35 35 H 1.09002 * 109.49052 * 58.82625 * 19 18 17 36 36 H 1.09000 * 109.52040 * 297.70612 * 20 19 18 37 37 H 1.09001 * 109.57615 * 177.54499 * 20 19 18 38 38 H 1.08005 * 120.31430 * 179.72575 * 21 11 10 39 39 H 1.07996 * 119.39374 * 180.25151 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.3868 2.1044 -1.3953 5 1 1.4913 2.6215 0.7982 6 1 3.5841 1.4131 0.5971 7 6 2.0075 -1.2156 -0.0005 8 1 3.0520 -1.2360 -0.2745 9 6 1.3527 -2.4031 0.3547 10 6 1.8452 -3.6234 -0.0947 11 6 1.1649 -4.8133 0.2775 12 7 1.5974 -5.9957 -0.1261 13 6 0.8120 -7.1992 0.1585 14 6 0.3517 -7.8307 -1.1570 15 8 -0.4537 -6.8971 -1.8793 16 6 1.5740 -8.2113 -1.9980 17 6 1.1031 -8.9135 -3.2765 18 8 0.3230 -10.0597 -2.9304 19 6 -0.8571 -9.7584 -2.1829 20 6 -0.4660 -9.0918 -0.8613 21 6 -0.0346 -4.6969 1.1176 22 6 -0.4444 -3.4808 1.5165 23 7 0.2258 -2.3520 1.1455 24 1 -0.0999 -1.4896 1.4471 25 1 -0.4850 0.8400 0.0004 26 1 2.7283 -3.6657 -0.7150 27 1 -0.0586 -6.9318 0.7574 28 1 1.4262 -7.9122 0.7084 29 1 0.0026 -6.0745 -2.1028 30 1 2.1316 -7.3115 -2.2583 31 1 2.2134 -8.8848 -1.4273 32 1 1.9695 -9.2261 -3.8593 33 1 0.4970 -8.2260 -3.8664 34 1 -1.4027 -10.6795 -1.9779 35 1 -1.4891 -9.0818 -2.7582 36 1 0.1323 -9.7830 -0.2678 37 1 -1.3656 -8.8213 -0.3085 38 1 -0.5792 -5.5807 1.4158 39 1 -1.3238 -3.3951 2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167551349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:27 Heat of formation + Delta-G solvation = -84.942649 kcal Electronic energy + Delta-G solvation = -21729.766130 eV Core-core repulsion = 18443.038488 eV Total energy + Delta-G solvation = -3286.727642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.84465 -40.22892 -37.80746 -36.17875 -35.05351 -33.26665 -32.37620 -32.07984 -30.59308 -28.42294 -26.96295 -24.62986 -23.94928 -23.14506 -21.75913 -20.98620 -19.74467 -18.38196 -17.60793 -17.29795 -17.04642 -16.91662 -16.60117 -16.07315 -15.83167 -15.41985 -15.26576 -14.91713 -14.51859 -14.43874 -13.87141 -13.54111 -13.27993 -13.19271 -12.95064 -12.82798 -12.80367 -12.59481 -12.34996 -12.26543 -12.03429 -11.82255 -11.45340 -11.32556 -11.17715 -10.94144 -10.29123 -9.98984 -9.27210 -8.98211 -7.73280 -6.64763 0.95276 1.06936 1.42468 1.54004 1.62320 2.15893 2.54932 2.91141 2.93664 3.26989 3.46088 3.79060 3.89209 4.04649 4.05890 4.12511 4.28405 4.41347 4.47738 4.61256 4.68195 4.74048 4.80797 4.87902 4.93495 4.97241 4.99539 5.04993 5.11685 5.19327 5.21315 5.33412 5.64916 5.82608 5.99367 6.10408 6.21749 6.46314 6.51395 6.66549 7.00756 7.17995 7.93039 8.03544 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034259 B = 0.003758 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.112818 B = 7449.119359 C = 7748.504391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.051 3.949 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.260 1.260 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.321 3.679 10 C -0.398 4.398 11 C 0.271 3.729 12 N -0.695 5.695 13 C 0.039 3.961 14 C 0.136 3.864 15 O -0.569 6.569 16 C -0.158 4.158 17 C 0.067 3.933 18 O -0.397 6.397 19 C 0.066 3.934 20 C -0.137 4.137 21 C -0.318 4.318 22 C 0.137 3.863 23 N -0.602 5.602 24 H 0.417 0.583 25 H 0.306 0.694 26 H 0.088 0.912 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.375 0.625 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.117 0.883 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -4.557 0.968 6.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.167 4.167 3 Si 0.812 3.188 4 H -0.190 1.190 5 H -0.181 1.181 6 H -0.183 1.183 7 C -0.527 4.527 8 H 0.114 0.886 9 C 0.212 3.788 10 C -0.427 4.427 11 C 0.109 3.891 12 N -0.423 5.423 13 C -0.092 4.092 14 C 0.095 3.905 15 O -0.376 6.376 16 C -0.197 4.197 17 C -0.009 4.009 18 O -0.316 6.316 19 C -0.010 4.010 20 C -0.175 4.175 21 C -0.348 4.348 22 C 0.008 3.992 23 N -0.213 5.213 24 H 0.258 0.742 25 H 0.118 0.882 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.223 0.777 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.147 0.853 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.838 -5.652 0.527 6.852 hybrid contribution -0.043 1.733 0.599 1.834 sum -3.881 -3.919 1.126 5.629 Atomic orbital electron populations 1.69342 1.08745 1.32656 1.34099 1.26897 0.95640 1.04738 0.89448 0.84997 0.79208 0.74973 0.79579 1.19000 1.18110 1.18328 1.19736 0.99397 0.90797 1.42723 0.88602 1.17746 0.82389 0.94275 0.84385 1.20163 1.11034 0.89513 1.22017 1.20387 0.88525 0.92587 0.87614 1.73263 1.32520 0.96915 1.39580 1.22407 0.95882 0.95125 0.95825 1.21328 0.89836 0.88587 0.90730 1.86292 1.43431 1.30873 1.76998 1.22565 0.98226 1.01061 0.97811 1.22598 0.95345 0.87577 0.95416 1.87835 1.37490 1.32404 1.73913 1.22595 0.86761 1.00977 0.90701 1.22173 1.01018 0.94940 0.99358 1.22341 1.04013 0.96924 1.11475 1.21879 0.95593 0.86224 0.95540 1.42060 1.25477 1.09348 1.44384 0.74237 0.88238 0.89336 0.95072 0.93490 0.77744 0.91413 0.91243 0.87568 0.93488 0.86520 0.93445 0.89266 0.90075 0.85280 0.80318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -33.89 11.17 21.89 0.24 -33.65 16 2 C 0.05 2.11 5.17 85.39 0.44 2.55 16 3 Si 0.99 31.57 29.59 68.60 2.03 33.60 16 4 H -0.27 -8.46 7.11 99.48 0.71 -7.75 16 5 H -0.26 -7.52 7.11 99.48 0.71 -6.81 16 6 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 7 C -0.49 -23.24 9.03 23.26 0.21 -23.03 16 8 H 0.10 4.49 7.91 -2.91 -0.02 4.47 16 9 C 0.32 15.60 6.35 38.88 0.25 15.85 16 10 C -0.40 -20.53 9.83 23.41 0.23 -20.30 16 11 C 0.27 13.11 6.80 42.30 0.29 13.40 16 12 N -0.70 -32.63 9.35 -334.98 -3.13 -35.77 16 13 C 0.04 1.56 5.41 86.38 0.47 2.02 16 14 C 0.14 4.75 0.79 -10.67 -0.01 4.75 16 15 O -0.57 -21.76 11.94 -148.98 -1.78 -23.54 16 16 C -0.16 -5.32 4.93 30.74 0.15 -5.17 16 17 C 0.07 1.96 6.70 72.08 0.48 2.45 16 18 O -0.40 -11.73 10.77 -148.98 -1.60 -13.33 16 19 C 0.07 1.74 6.69 72.02 0.48 2.22 16 20 C -0.14 -3.89 5.15 30.69 0.16 -3.73 16 21 C -0.32 -13.27 9.40 23.66 0.22 -13.05 16 22 C 0.14 5.09 11.15 83.10 0.93 6.02 16 23 N -0.60 -25.28 4.88 -188.19 -0.92 -26.20 16 24 H 0.42 16.48 6.40 -92.71 -0.59 15.88 16 25 H 0.31 11.09 8.29 -92.71 -0.77 10.32 16 26 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.03 1.24 5.21 -2.39 -0.01 1.23 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.37 15.35 8.50 -74.06 -0.63 14.72 16 30 H 0.07 2.56 7.72 -2.39 -0.02 2.54 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.05 1.42 7.82 -2.38 -0.02 1.40 16 34 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.33 7.82 -2.39 -0.02 1.31 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.13 4.97 5.88 -2.91 -0.02 4.95 16 39 H 0.18 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -56.23 316.94 -1.00 -57.23 By element: Atomic # 1 Polarization: 57.80 SS G_CDS: -0.14 Total: 57.66 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 4.30 Total: -16.01 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -3.81 Total: -95.61 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -3.38 Total: -36.87 kcal Atomic # 14 Polarization: 31.57 SS G_CDS: 2.03 Total: 33.60 kcal Total: -56.23 -1.00 -57.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167551349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.708 kcal (2) G-P(sol) polarization free energy of solvation -56.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds