Wall clock time and date at job start Tue Mar 31 2020 00:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86806 * 119.99908 * 2 1 4 4 H 1.48505 * 109.46934 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47085 * 300.00277 * 3 2 1 6 6 H 1.48496 * 109.46959 * 60.00702 * 3 2 1 7 7 C 1.38631 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99764 * 179.97438 * 7 2 1 9 9 O 1.34802 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.35814 * 117.00253 * 185.10520 * 9 7 2 11 11 C 1.39441 * 120.40628 * 354.16184 * 10 9 7 12 12 C 1.38210 * 118.45324 * 179.72802 * 11 10 9 13 13 C 1.39168 * 119.16847 * 0.49499 * 12 11 10 14 14 N 1.39118 * 119.63210 * 179.77272 * 13 12 11 15 15 C 1.46499 * 120.00115 * 0.38455 * 14 13 12 16 16 C 1.52997 * 110.43591 * 294.88410 * 15 14 13 17 17 O 1.42903 * 109.47152 * 305.60791 * 16 15 14 18 18 C 1.54888 * 110.48771 * 172.34091 * 15 14 13 19 19 C 1.55240 * 102.58600 * 279.18778 * 18 15 14 20 20 C 1.54260 * 104.23317 * 322.08245 * 19 18 15 21 21 C 1.53878 * 106.59894 * 23.61410 * 20 19 18 22 22 N 1.32383 * 120.73673 * 359.49073 * 13 12 11 23 23 C 1.31938 * 121.69545 * 0.25947 * 22 13 12 24 24 H 0.96997 * 119.99737 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.77395 * 359.95616 * 11 10 9 26 26 H 1.08004 * 120.41657 * 180.25964 * 12 11 10 27 27 H 0.96998 * 120.00091 * 180.66598 * 14 13 12 28 28 H 1.09001 * 109.47276 * 65.60496 * 16 15 14 29 29 H 1.09004 * 109.47173 * 185.60615 * 16 15 14 30 30 H 0.96694 * 114.00129 * 179.97438 * 17 16 15 31 31 H 1.09000 * 110.75554 * 37.58328 * 18 15 14 32 32 H 1.09003 * 110.75707 * 160.95310 * 18 15 14 33 33 H 1.09004 * 110.46676 * 203.39255 * 19 18 15 34 34 H 1.09003 * 110.57819 * 80.83672 * 19 18 15 35 35 H 1.09000 * 110.03339 * 264.32318 * 20 19 18 36 36 H 1.09004 * 110.03109 * 142.89973 * 20 19 18 37 37 H 1.09001 * 110.02999 * 240.71311 * 21 20 19 38 38 H 1.08994 * 110.03141 * 119.28108 * 21 20 19 39 39 H 1.07993 * 119.62812 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8911 2.3964 1.2126 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3350 -2.3680 -0.0005 10 6 2.0706 -3.5047 0.1066 11 6 3.4638 -3.4480 0.0885 12 6 4.1724 -4.6288 0.2061 13 6 3.4768 -5.8281 0.3273 14 7 4.1803 -7.0228 0.4415 15 6 5.6453 -7.0130 0.4422 16 6 6.1769 -6.5318 -0.9093 17 8 5.6140 -7.3284 -1.9537 18 6 6.1967 -8.4226 0.7709 19 6 6.0881 -8.4760 2.3185 20 6 6.4602 -7.0500 2.7742 21 6 6.1787 -6.1197 1.5812 22 7 2.1531 -5.8442 0.3408 23 6 1.4453 -4.7357 0.2358 24 1 -0.4849 0.8400 0.0004 25 1 3.9772 -2.5031 -0.0113 26 1 5.2524 -4.6213 0.2002 27 1 3.7010 -7.8627 0.5166 28 1 5.8992 -5.4884 -1.0584 29 1 7.2629 -6.6247 -0.9266 30 1 5.9073 -7.0786 -2.8405 31 1 5.5806 -9.1953 0.3109 32 1 7.2352 -8.5150 0.4529 33 1 6.7919 -9.2023 2.7252 34 1 5.0704 -8.7205 2.6230 35 1 7.5164 -7.0067 3.0404 36 1 5.8476 -6.7589 3.6275 37 1 7.0982 -5.6250 1.2684 38 1 5.4294 -5.3772 1.8555 39 1 0.3667 -4.7875 0.2510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167804508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:30 Heat of formation + Delta-G solvation = -31.299831 kcal Electronic energy + Delta-G solvation = -21896.349924 eV Core-core repulsion = 18611.948409 eV Total energy + Delta-G solvation = -3284.401515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19439 -38.81681 -36.89986 -36.13037 -33.45920 -32.18621 -31.35397 -29.46164 -29.00784 -27.46143 -25.24367 -24.34577 -22.85280 -21.62550 -20.56172 -19.51908 -18.10033 -17.34508 -17.21197 -16.39102 -15.91794 -15.45859 -15.06394 -14.74112 -14.37643 -14.09878 -13.97808 -13.59127 -13.18354 -12.94431 -12.60079 -12.42962 -12.29525 -11.77402 -11.62701 -11.57845 -11.43220 -11.21033 -11.06381 -11.04812 -10.78488 -10.53964 -10.46777 -9.88074 -9.60192 -9.27583 -8.90123 -8.68211 -8.49193 -6.57679 -6.39666 -3.96723 2.06138 2.47545 3.13713 3.14757 3.19966 3.58747 3.99630 4.08356 4.46770 4.53431 4.74211 4.81903 5.13058 5.13159 5.22562 5.29721 5.34512 5.37684 5.43719 5.52958 5.58955 5.66296 5.68616 5.79802 5.85717 5.87832 5.99084 6.02399 6.09681 6.16666 6.29758 6.56856 6.76524 7.13872 7.26545 7.30407 7.60914 7.77049 8.01871 8.23561 8.97675 9.06054 9.76739 10.78539 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026167 B = 0.004150 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.780808 B = 6745.351622 C = 6923.538406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.087 0.913 9 O -0.180 6.180 10 C 0.062 3.938 11 C -0.156 4.156 12 C -0.197 4.197 13 C 0.322 3.678 14 N -0.714 5.714 15 C 0.194 3.806 16 C 0.059 3.941 17 O -0.560 6.560 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.145 4.145 22 N -0.503 5.503 23 C 0.070 3.930 24 H 0.268 0.732 25 H 0.134 0.866 26 H 0.123 0.877 27 H 0.396 0.604 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.374 0.626 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.050 -12.502 1.314 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.105 0.895 9 O -0.084 6.084 10 C 0.007 3.993 11 C -0.183 4.183 12 C -0.221 4.221 13 C 0.090 3.910 14 N -0.352 5.352 15 C 0.105 3.895 16 C -0.021 4.021 17 O -0.364 6.364 18 C -0.153 4.153 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.183 4.183 22 N -0.220 5.220 23 C -0.089 4.089 24 H 0.078 0.922 25 H 0.152 0.848 26 H 0.141 0.859 27 H 0.231 0.769 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.056 -13.272 1.891 19.424 hybrid contribution 1.129 1.764 -0.582 2.174 sum 15.185 -11.508 1.309 19.098 Atomic orbital electron populations 1.70050 1.05850 1.27359 1.46742 1.25228 0.95820 0.98636 0.96870 0.85687 0.79030 0.80689 0.78221 1.19272 1.20221 1.20205 1.21258 0.91555 0.81035 1.52751 0.89517 1.83992 1.33406 1.10892 1.80073 1.20235 0.90795 0.89669 0.98645 1.21408 0.93976 0.98430 1.04516 1.21399 0.99700 0.91809 1.09210 1.17847 0.87985 0.86007 0.99157 1.43772 1.02570 1.05509 1.83340 1.20822 0.81029 0.95759 0.91841 1.22917 0.95628 0.95253 0.88279 1.86510 1.72713 1.59857 1.17339 1.22699 1.01179 0.95582 0.95830 1.22430 1.01711 0.96811 0.95240 1.22057 1.00896 0.94707 0.97974 1.22800 1.01604 0.98988 0.94934 1.66941 1.06081 1.30639 1.18289 1.21461 0.99111 0.84959 1.03396 0.92184 0.84819 0.85918 0.76891 0.92398 0.93569 0.78046 0.90642 0.90403 0.91743 0.91377 0.91959 0.91733 0.91162 0.89319 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.39 -10.84 9.50 30.88 0.29 -10.55 16 8 H 0.09 2.23 5.26 -52.49 -0.28 1.95 16 9 O -0.18 -5.13 9.77 -0.07 0.00 -5.14 16 10 C 0.06 1.51 6.66 -38.97 -0.26 1.25 16 11 C -0.16 -3.38 9.25 -39.14 -0.36 -3.74 16 12 C -0.20 -3.66 6.78 -39.25 -0.27 -3.92 16 13 C 0.32 6.07 7.13 -154.91 -1.11 4.97 16 14 N -0.71 -10.85 5.05 -46.16 -0.23 -11.09 16 15 C 0.19 2.34 0.54 -130.16 -0.07 2.27 16 16 C 0.06 0.68 5.58 37.16 0.21 0.89 16 17 O -0.56 -6.93 13.32 -35.23 -0.47 -7.40 16 18 C -0.12 -1.13 5.78 -24.55 -0.14 -1.28 16 19 C -0.12 -1.16 6.80 -24.89 -0.17 -1.32 16 20 C -0.12 -1.17 6.80 -25.61 -0.17 -1.35 16 21 C -0.14 -1.65 4.72 -25.61 -0.12 -1.78 16 22 N -0.50 -10.57 10.39 -12.25 -0.13 -10.70 16 23 C 0.07 1.56 11.14 -17.34 -0.19 1.37 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.13 2.83 5.76 -52.48 -0.30 2.52 16 26 H 0.12 1.91 3.90 -52.48 -0.20 1.71 16 27 H 0.40 5.92 8.59 -40.82 -0.35 5.57 16 28 H 0.06 0.75 5.33 -51.93 -0.28 0.47 16 29 H 0.05 0.42 8.06 -51.93 -0.42 0.00 16 30 H 0.37 3.10 9.12 45.56 0.42 3.51 16 31 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 32 H 0.08 0.67 8.00 -51.93 -0.42 0.25 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.68 7.84 -51.93 -0.41 0.28 16 38 H 0.09 1.25 5.49 -51.93 -0.29 0.96 16 39 H 0.15 3.18 8.06 -52.49 -0.42 2.75 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -32.30 313.56 -7.01 -39.32 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.19 Total: 11.70 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -2.46 Total: -12.23 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.40 Total: -46.44 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.47 Total: -12.53 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.30 -7.01 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167804508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.016 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds