Wall clock time and date at job start Tue Mar 31 2020 00:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86806 * 119.99908 * 2 1 4 4 H 1.48505 * 109.46934 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47085 * 300.00277 * 3 2 1 6 6 H 1.48496 * 109.46959 * 60.00702 * 3 2 1 7 7 C 1.38631 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99764 * 179.97438 * 7 2 1 9 9 O 1.34802 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.35814 * 117.00253 * 185.10520 * 9 7 2 11 11 C 1.39441 * 120.40628 * 354.16184 * 10 9 7 12 12 C 1.38210 * 118.45324 * 179.72802 * 11 10 9 13 13 C 1.39168 * 119.16847 * 0.49499 * 12 11 10 14 14 N 1.39118 * 119.63210 * 179.77272 * 13 12 11 15 15 C 1.46499 * 120.00115 * 0.38455 * 14 13 12 16 16 C 1.52997 * 110.43591 * 294.88410 * 15 14 13 17 17 O 1.42903 * 109.47152 * 305.60791 * 16 15 14 18 18 C 1.54888 * 110.48771 * 172.34091 * 15 14 13 19 19 C 1.55240 * 102.58600 * 279.18778 * 18 15 14 20 20 C 1.54260 * 104.23317 * 322.08245 * 19 18 15 21 21 C 1.53878 * 106.59894 * 23.61410 * 20 19 18 22 22 N 1.32383 * 120.73673 * 359.49073 * 13 12 11 23 23 C 1.31938 * 121.69545 * 0.25947 * 22 13 12 24 24 H 0.96997 * 119.99737 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.77395 * 359.95616 * 11 10 9 26 26 H 1.08004 * 120.41657 * 180.25964 * 12 11 10 27 27 H 0.96998 * 120.00091 * 180.66598 * 14 13 12 28 28 H 1.09001 * 109.47276 * 65.60496 * 16 15 14 29 29 H 1.09004 * 109.47173 * 185.60615 * 16 15 14 30 30 H 0.96694 * 114.00129 * 179.97438 * 17 16 15 31 31 H 1.09000 * 110.75554 * 37.58328 * 18 15 14 32 32 H 1.09003 * 110.75707 * 160.95310 * 18 15 14 33 33 H 1.09004 * 110.46676 * 203.39255 * 19 18 15 34 34 H 1.09003 * 110.57819 * 80.83672 * 19 18 15 35 35 H 1.09000 * 110.03339 * 264.32318 * 20 19 18 36 36 H 1.09004 * 110.03109 * 142.89973 * 20 19 18 37 37 H 1.09001 * 110.02999 * 240.71311 * 21 20 19 38 38 H 1.08994 * 110.03141 * 119.28108 * 21 20 19 39 39 H 1.07993 * 119.62812 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8911 2.3964 1.2126 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3350 -2.3680 -0.0005 10 6 2.0706 -3.5047 0.1066 11 6 3.4638 -3.4480 0.0885 12 6 4.1724 -4.6288 0.2061 13 6 3.4768 -5.8281 0.3273 14 7 4.1803 -7.0228 0.4415 15 6 5.6453 -7.0130 0.4422 16 6 6.1769 -6.5318 -0.9093 17 8 5.6140 -7.3284 -1.9537 18 6 6.1967 -8.4226 0.7709 19 6 6.0881 -8.4760 2.3185 20 6 6.4602 -7.0500 2.7742 21 6 6.1787 -6.1197 1.5812 22 7 2.1531 -5.8442 0.3408 23 6 1.4453 -4.7357 0.2358 24 1 -0.4849 0.8400 0.0004 25 1 3.9772 -2.5031 -0.0113 26 1 5.2524 -4.6213 0.2002 27 1 3.7010 -7.8627 0.5166 28 1 5.8992 -5.4884 -1.0584 29 1 7.2629 -6.6247 -0.9266 30 1 5.9073 -7.0786 -2.8405 31 1 5.5806 -9.1953 0.3109 32 1 7.2352 -8.5150 0.4529 33 1 6.7919 -9.2023 2.7252 34 1 5.0704 -8.7205 2.6230 35 1 7.5164 -7.0067 3.0404 36 1 5.8476 -6.7589 3.6275 37 1 7.0982 -5.6250 1.2684 38 1 5.4294 -5.3772 1.8555 39 1 0.3667 -4.7875 0.2510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167804508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:29 Heat of formation + Delta-G solvation = -55.493765 kcal Electronic energy + Delta-G solvation = -21897.399051 eV Core-core repulsion = 18611.948409 eV Total energy + Delta-G solvation = -3285.450643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59552 -40.21555 -38.62490 -37.01663 -34.83057 -34.09752 -33.01822 -30.62175 -29.95142 -28.92266 -27.15501 -25.24707 -24.50556 -23.25974 -21.41560 -20.61258 -19.98318 -18.98063 -18.20247 -17.79466 -17.48212 -16.43350 -16.40981 -16.07364 -15.77087 -15.62920 -15.40182 -15.03548 -14.69282 -14.25470 -14.05628 -13.87575 -13.53427 -13.37123 -13.27877 -12.83741 -12.59367 -12.27651 -12.09597 -12.02336 -11.95948 -11.71037 -11.56021 -11.33900 -10.97413 -10.82900 -10.50009 -10.35880 -10.24417 -8.41945 -8.20078 -6.06734 0.36827 0.76073 1.37469 1.46092 1.55521 2.18658 2.32562 2.90662 3.21081 3.22292 3.53987 3.65612 3.69626 3.83424 4.04236 4.08818 4.25933 4.27632 4.34126 4.49595 4.54503 4.58433 4.63266 4.79801 4.83639 4.89007 4.95006 4.99018 5.08168 5.09434 5.25531 5.29657 5.30105 5.49772 5.50821 5.63591 6.02198 6.34460 6.78581 6.90994 7.02215 7.37164 7.84018 8.81769 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026167 B = 0.004150 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.780808 B = 6745.351622 C = 6923.538406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.018 2.982 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.409 4.409 8 H 0.101 0.899 9 O -0.229 6.229 10 C 0.022 3.978 11 C -0.151 4.151 12 C -0.186 4.186 13 C 0.339 3.661 14 N -0.704 5.704 15 C 0.180 3.820 16 C 0.057 3.943 17 O -0.581 6.581 18 C -0.107 4.107 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.146 4.146 22 N -0.519 5.519 23 C 0.063 3.937 24 H 0.271 0.729 25 H 0.138 0.862 26 H 0.159 0.841 27 H 0.398 0.602 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.391 0.609 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.038 -13.630 1.426 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.172 1.172 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.486 4.486 8 H 0.118 0.882 9 O -0.136 6.136 10 C -0.031 4.031 11 C -0.177 4.177 12 C -0.210 4.210 13 C 0.103 3.897 14 N -0.340 5.340 15 C 0.093 3.907 16 C -0.022 4.022 17 O -0.388 6.388 18 C -0.145 4.145 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.184 4.184 22 N -0.237 5.237 23 C -0.094 4.094 24 H 0.080 0.920 25 H 0.155 0.845 26 H 0.177 0.823 27 H 0.233 0.767 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.239 0.761 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 18.095 -14.473 1.996 23.256 hybrid contribution 0.074 1.741 -0.601 1.843 sum 18.168 -12.732 1.394 22.229 Atomic orbital electron populations 1.70204 1.08014 1.28551 1.49364 1.26542 0.96828 1.02617 0.96170 0.84542 0.78352 0.74993 0.78395 1.17225 1.19549 1.19590 1.21802 0.92423 0.81499 1.52862 0.88178 1.83957 1.34981 1.11955 1.82689 1.20576 0.92153 0.89220 1.01179 1.21577 0.93027 0.99759 1.03381 1.21698 1.01342 0.90454 1.07513 1.18266 0.87604 0.87618 0.96199 1.44066 1.04218 1.04207 1.81465 1.21267 0.78733 0.97902 0.92823 1.22945 0.97592 0.94073 0.87547 1.86462 1.73417 1.60210 1.18675 1.22699 1.02176 0.93582 0.95993 1.22427 1.01562 0.97005 0.94979 1.22066 1.02111 0.94518 0.96818 1.22807 1.01760 0.98611 0.95269 1.67027 1.07216 1.29785 1.19680 1.21511 0.99487 0.85009 1.03380 0.91998 0.84459 0.82345 0.76653 0.93951 0.90059 0.76075 0.91145 0.88056 0.89599 0.92785 0.89689 0.93003 0.88699 0.92212 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.80 13.67 21.61 0.30 -56.50 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 42.50 29.55 68.60 2.03 44.53 16 4 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.41 -23.64 9.50 67.91 0.64 -22.99 16 8 H 0.10 5.23 5.26 -2.91 -0.02 5.21 16 9 O -0.23 -13.83 9.77 -23.17 -0.23 -14.06 16 10 C 0.02 1.10 6.66 22.66 0.15 1.25 16 11 C -0.15 -6.53 9.25 22.55 0.21 -6.32 16 12 C -0.19 -6.65 6.78 22.49 0.15 -6.50 16 13 C 0.34 12.40 7.13 133.04 0.95 13.35 16 14 N -0.70 -19.95 5.05 -299.96 -1.51 -21.47 16 15 C 0.18 3.73 0.54 4.68 0.00 3.73 16 16 C 0.06 1.11 5.58 71.98 0.40 1.51 16 17 O -0.58 -12.52 13.32 -148.98 -1.98 -14.50 16 18 C -0.11 -1.68 5.78 32.01 0.19 -1.49 16 19 C -0.12 -1.84 6.80 31.79 0.22 -1.63 16 20 C -0.12 -1.92 6.80 31.32 0.21 -1.71 16 21 C -0.15 -2.83 4.72 31.32 0.15 -2.68 16 22 N -0.52 -21.97 10.39 -192.67 -2.00 -23.97 16 23 C 0.06 2.95 11.14 84.78 0.94 3.90 16 24 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 25 H 0.14 5.78 5.76 -2.91 -0.02 5.76 16 26 H 0.16 4.50 3.90 -2.91 -0.01 4.49 16 27 H 0.40 11.20 8.59 -92.71 -0.80 10.40 16 28 H 0.04 0.94 5.33 -2.39 -0.01 0.93 16 29 H 0.08 1.05 8.06 -2.39 -0.02 1.03 16 30 H 0.39 5.31 9.12 -74.06 -0.68 4.64 16 31 H 0.07 1.22 8.04 -2.39 -0.02 1.20 16 32 H 0.10 1.18 8.00 -2.39 -0.02 1.17 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.39 7.84 -2.39 -0.02 1.37 16 38 H 0.06 1.53 5.49 -2.39 -0.01 1.51 16 39 H 0.15 6.75 8.06 -2.91 -0.02 6.73 16 Total: -1.00 -73.72 313.56 0.91 -72.81 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -0.37 Total: 33.66 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 4.68 Total: -20.50 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -3.22 Total: -101.94 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -2.21 Total: -28.56 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -73.72 0.91 -72.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167804508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.318 kcal (2) G-P(sol) polarization free energy of solvation -73.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds