Wall clock time and date at job start Mon Mar 30 2020 23:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47461 * 53.69111 * 3 2 1 5 5 N 1.46501 * 109.47487 * 179.97438 * 4 3 2 6 6 C 1.46509 * 120.00082 * 270.00164 * 5 4 3 7 7 C 1.50688 * 109.47068 * 269.99730 * 6 5 4 8 8 H 1.08008 * 120.00361 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00403 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99332 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00578 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47425 * 120.00201 * 11 9 7 14 14 H 1.48502 * 109.47045 * 240.00564 * 11 9 7 15 15 C 1.34778 * 119.99897 * 89.99827 * 5 4 3 16 16 O 1.21280 * 119.99833 * 180.02562 * 15 5 4 17 17 C 1.50692 * 120.00205 * 0.02562 * 15 5 4 18 18 C 1.50699 * 109.47534 * 179.97438 * 17 15 5 19 19 N 1.30894 * 125.88928 * 305.02489 * 18 17 15 20 20 C 1.33656 * 109.76515 * 179.97438 * 19 18 17 21 21 N 1.39607 * 125.60737 * 180.02562 * 20 19 18 22 22 N 1.31203 * 108.77946 * 0.02562 * 20 19 18 23 23 N 1.34337 * 125.89796 * 124.99783 * 18 17 15 24 24 H 0.96999 * 126.75988 * 0.03917 * 23 18 17 25 25 H 1.09007 * 109.47364 * 293.68770 * 3 2 1 26 26 H 1.09000 * 109.46808 * 173.69248 * 3 2 1 27 27 H 1.09007 * 109.46935 * 60.00029 * 4 3 2 28 28 H 1.09000 * 109.47221 * 299.99884 * 4 3 2 29 29 H 1.09004 * 109.46711 * 30.00177 * 6 5 4 30 30 H 1.08997 * 109.46750 * 149.99413 * 6 5 4 31 31 H 0.96998 * 119.99979 * 179.97438 * 10 9 7 32 32 H 1.09006 * 109.47143 * 59.99699 * 17 15 5 33 33 H 1.09004 * 109.47142 * 300.00277 * 17 15 5 34 34 H 0.97000 * 120.00018 * 359.97438 * 21 20 19 35 35 H 0.96991 * 119.99728 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1183 -0.8532 -1.1623 5 7 4.5833 -0.8521 -1.1627 6 6 5.3149 0.1709 -1.9143 7 6 5.5662 -0.3199 -3.3167 8 1 5.2163 -1.2963 -3.6181 9 6 6.2426 0.4775 -4.2154 10 7 6.6691 1.6662 -3.8483 11 14 6.5535 -0.1305 -5.9541 12 1 5.9766 -1.4894 -6.1138 13 1 5.9145 0.7950 -6.9238 14 1 8.0159 -0.1802 -6.2070 15 6 5.2581 -1.7920 -0.4716 16 8 6.4709 -1.7908 -0.4715 17 6 4.5057 -2.8445 0.3011 18 6 5.4858 -3.7669 0.9789 19 7 6.4474 -4.4316 0.3899 20 6 7.1210 -5.1489 1.2944 21 7 8.2114 -5.9782 1.0258 22 7 6.5887 -4.9453 2.4763 23 7 5.5238 -4.0487 2.2918 24 1 4.9318 -3.7016 2.9774 25 1 2.9715 -0.4121 0.9411 26 1 2.9707 1.0223 -0.1129 27 1 2.7548 -0.4404 -2.1035 28 1 2.7555 -1.8748 -1.0494 29 1 4.7251 1.0868 -1.9500 30 1 6.2672 0.3709 -1.4233 31 1 7.1453 2.2271 -4.4804 32 1 3.8796 -3.4186 -0.3820 33 1 3.8785 -2.3647 1.0525 34 1 8.5392 -6.0695 0.1175 35 1 8.6407 -6.4637 1.7474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180247424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:49 Heat of formation + Delta-G solvation = 86.999417 kcal Electronic energy + Delta-G solvation = -20957.375721 eV Core-core repulsion = 17606.856454 eV Total energy + Delta-G solvation = -3350.519267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.88977 -39.25223 -36.91527 -35.31024 -34.78545 -32.99584 -32.12525 -31.21426 -30.88873 -28.63955 -26.83924 -24.07722 -23.14364 -21.80293 -20.81950 -18.62683 -18.05353 -17.68922 -16.73636 -16.46100 -16.27619 -15.75098 -15.53348 -15.17145 -14.75183 -14.65177 -14.27827 -13.72635 -13.32215 -13.12598 -12.65997 -12.48336 -12.34310 -12.08248 -11.76644 -11.62319 -11.29672 -11.25089 -11.00632 -10.86585 -10.63834 -10.18403 -9.74238 -9.69605 -9.60021 -9.09366 -8.46855 -8.23681 -7.88269 -6.08493 -4.12546 1.78341 2.63050 2.68036 2.75704 3.21398 3.23179 3.29628 3.38211 3.42219 3.46593 3.66419 4.15339 4.40196 4.43593 4.73497 4.86911 5.03218 5.10798 5.26167 5.27837 5.32527 5.44894 5.77293 6.01490 6.04109 6.45728 6.87610 7.11524 7.32987 7.40580 7.44115 7.51472 7.52136 7.88087 8.16422 8.19573 8.52513 8.81698 8.96149 9.53169 10.99796 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.010992 B = 0.005982 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.585928 B = 4679.889799 C = 6797.663504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.246 3.754 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.513 3.487 16 O -0.504 6.504 17 C -0.072 4.072 18 C 0.330 3.670 19 N -0.535 5.535 20 C 0.477 3.523 21 N -0.826 5.826 22 N -0.377 5.377 23 N -0.485 5.485 24 H 0.436 0.564 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.415 0.585 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.084 -8.896 10.823 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.102 4.102 3 C -0.093 4.093 4 C -0.012 4.012 5 N -0.329 5.329 6 C 0.128 3.872 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.209 1.209 15 C 0.297 3.703 16 O -0.378 6.378 17 C -0.115 4.115 18 C 0.049 3.951 19 N -0.269 5.269 20 C 0.105 3.895 21 N -0.383 5.383 22 N -0.217 5.217 23 N -0.205 5.205 24 H 0.282 0.718 25 H 0.123 0.877 26 H 0.136 0.864 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.246 0.754 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.672 -9.031 10.999 15.320 hybrid contribution 0.432 -0.072 -0.711 0.835 sum -5.240 -9.102 10.288 14.702 Atomic orbital electron populations 1.81222 1.13081 1.09068 1.08798 1.29099 0.95096 0.92977 0.93046 1.19918 0.81334 1.05599 1.02415 1.21349 0.82241 0.99479 0.98104 1.48171 1.04745 1.30891 1.49100 1.19364 0.92596 0.84725 0.90534 1.21458 1.36625 1.02604 0.95850 0.92172 1.24912 0.95297 0.94833 0.98955 1.69927 1.38428 1.09472 1.35541 0.86463 0.78118 0.78836 0.84147 1.19712 1.21059 1.20921 1.19668 0.88101 0.82105 0.80455 1.90787 1.13263 1.72132 1.61590 1.20401 0.95618 0.95188 1.00317 1.23265 0.94556 0.94980 0.82267 1.70259 1.09206 1.14596 1.32809 1.20459 0.90534 0.91481 0.87053 1.40928 1.32838 1.51477 1.13019 1.78067 1.06254 1.18211 1.19155 1.47519 1.27351 1.37739 1.07885 0.71845 0.87694 0.86362 0.88496 0.90543 0.94615 0.93557 0.92756 0.85671 0.87236 0.75424 0.75990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.98 18.54 42.15 0.78 -5.20 16 2 C 0.22 2.28 15.43 -20.76 -0.32 1.95 16 3 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 4 C 0.11 1.32 5.17 -4.04 -0.02 1.30 16 5 N -0.60 -10.05 2.46 -175.06 -0.43 -10.48 16 6 C 0.25 5.61 5.16 -5.19 -0.03 5.58 16 7 C -0.53 -13.78 9.39 -34.45 -0.32 -14.11 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 11 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.51 8.87 7.66 -10.99 -0.08 8.79 16 16 O -0.50 -11.61 15.14 5.56 0.08 -11.52 16 17 C -0.07 -0.82 4.88 -29.04 -0.14 -0.97 16 18 C 0.33 4.72 7.03 -155.73 -1.09 3.62 16 19 N -0.54 -9.35 10.56 -11.13 -0.12 -9.47 16 20 C 0.48 7.51 9.44 -321.16 -3.03 4.47 16 21 N -0.83 -9.66 9.13 30.00 0.27 -9.39 16 22 N -0.38 -5.64 12.82 29.99 0.38 -5.26 16 23 N -0.49 -5.98 7.43 32.62 0.24 -5.73 16 24 H 0.44 3.49 8.96 -182.35 -1.63 1.86 16 25 H 0.11 0.62 7.22 -51.93 -0.38 0.25 16 26 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.08 0.67 6.44 -51.93 -0.33 0.33 16 29 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.13 1.18 7.40 -51.93 -0.38 0.79 16 33 H 0.11 0.71 7.19 -51.93 -0.37 0.34 16 34 H 0.41 4.38 8.96 -40.82 -0.37 4.01 16 35 H 0.41 3.66 8.96 -40.82 -0.37 3.29 16 LS Contribution 318.81 15.07 4.80 4.80 Total: -1.00 -37.51 318.81 -8.60 -46.11 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.02 Total: 2.95 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -5.32 Total: 11.62 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: 1.87 Total: -70.10 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -37.51 -8.60 -46.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180247424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.113 kcal (2) G-P(sol) polarization free energy of solvation -37.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds