Wall clock time and date at job start Mon Mar 30 2020 23:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47461 * 53.69111 * 3 2 1 5 5 N 1.46501 * 109.47487 * 179.97438 * 4 3 2 6 6 C 1.46509 * 120.00082 * 270.00164 * 5 4 3 7 7 C 1.50688 * 109.47068 * 269.99730 * 6 5 4 8 8 H 1.08008 * 120.00361 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00403 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99332 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00578 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47425 * 120.00201 * 11 9 7 14 14 H 1.48502 * 109.47045 * 240.00564 * 11 9 7 15 15 C 1.34778 * 119.99897 * 89.99827 * 5 4 3 16 16 O 1.21280 * 119.99833 * 180.02562 * 15 5 4 17 17 C 1.50692 * 120.00205 * 0.02562 * 15 5 4 18 18 C 1.50699 * 109.47534 * 179.97438 * 17 15 5 19 19 N 1.30894 * 125.88928 * 305.02489 * 18 17 15 20 20 C 1.33656 * 109.76515 * 179.97438 * 19 18 17 21 21 N 1.39607 * 125.60737 * 180.02562 * 20 19 18 22 22 N 1.31203 * 108.77946 * 0.02562 * 20 19 18 23 23 N 1.34337 * 125.89796 * 124.99783 * 18 17 15 24 24 H 0.96999 * 126.75988 * 0.03917 * 23 18 17 25 25 H 1.09007 * 109.47364 * 293.68770 * 3 2 1 26 26 H 1.09000 * 109.46808 * 173.69248 * 3 2 1 27 27 H 1.09007 * 109.46935 * 60.00029 * 4 3 2 28 28 H 1.09000 * 109.47221 * 299.99884 * 4 3 2 29 29 H 1.09004 * 109.46711 * 30.00177 * 6 5 4 30 30 H 1.08997 * 109.46750 * 149.99413 * 6 5 4 31 31 H 0.96998 * 119.99979 * 179.97438 * 10 9 7 32 32 H 1.09006 * 109.47143 * 59.99699 * 17 15 5 33 33 H 1.09004 * 109.47142 * 300.00277 * 17 15 5 34 34 H 0.97000 * 120.00018 * 359.97438 * 21 20 19 35 35 H 0.96991 * 119.99728 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1183 -0.8532 -1.1623 5 7 4.5833 -0.8521 -1.1627 6 6 5.3149 0.1709 -1.9143 7 6 5.5662 -0.3199 -3.3167 8 1 5.2163 -1.2963 -3.6181 9 6 6.2426 0.4775 -4.2154 10 7 6.6691 1.6662 -3.8483 11 14 6.5535 -0.1305 -5.9541 12 1 5.9766 -1.4894 -6.1138 13 1 5.9145 0.7950 -6.9238 14 1 8.0159 -0.1802 -6.2070 15 6 5.2581 -1.7920 -0.4716 16 8 6.4709 -1.7908 -0.4715 17 6 4.5057 -2.8445 0.3011 18 6 5.4858 -3.7669 0.9789 19 7 6.4474 -4.4316 0.3899 20 6 7.1210 -5.1489 1.2944 21 7 8.2114 -5.9782 1.0258 22 7 6.5887 -4.9453 2.4763 23 7 5.5238 -4.0487 2.2918 24 1 4.9318 -3.7016 2.9774 25 1 2.9715 -0.4121 0.9411 26 1 2.9707 1.0223 -0.1129 27 1 2.7548 -0.4404 -2.1035 28 1 2.7555 -1.8748 -1.0494 29 1 4.7251 1.0868 -1.9500 30 1 6.2672 0.3709 -1.4233 31 1 7.1453 2.2271 -4.4804 32 1 3.8796 -3.4186 -0.3820 33 1 3.8785 -2.3647 1.0525 34 1 8.5392 -6.0695 0.1175 35 1 8.6407 -6.4637 1.7474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180247424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:48 Heat of formation + Delta-G solvation = 59.921637 kcal Electronic energy + Delta-G solvation = -20958.549902 eV Core-core repulsion = 17606.856454 eV Total energy + Delta-G solvation = -3351.693448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.94822 -40.58594 -37.90469 -36.61731 -35.79436 -34.83634 -33.27208 -32.31559 -32.02606 -29.92310 -28.40455 -25.23017 -24.77771 -22.91620 -21.95662 -19.89712 -19.07636 -18.76176 -18.26356 -17.87287 -17.35466 -16.96025 -16.60552 -16.44207 -16.02230 -15.89123 -15.58267 -14.75189 -14.51325 -14.36215 -14.12685 -13.54490 -13.48292 -13.42716 -13.06858 -12.84556 -12.74791 -12.61390 -12.47507 -12.21700 -12.12199 -11.74269 -11.58394 -10.86804 -10.75731 -10.54537 -10.49615 -9.39543 -9.22041 -8.13790 -6.24571 0.72506 1.41303 1.44787 1.54639 1.69938 1.78514 1.94240 1.97281 2.12244 2.40488 2.48742 2.61372 3.17184 3.23110 3.45555 3.83000 3.92312 4.18172 4.22410 4.41354 4.53434 4.71485 4.95599 5.06504 5.15673 5.21763 5.39571 5.41873 5.67685 5.94130 6.19237 6.27087 6.46209 6.66267 6.70880 6.80923 6.88534 7.40596 7.52935 7.59798 8.92910 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.010992 B = 0.005982 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.585928 B = 4679.889799 C = 6797.663504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.247 3.753 3 C -0.040 4.040 4 C 0.108 3.892 5 N -0.595 5.595 6 C 0.261 3.739 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.954 3.046 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.288 1.288 15 C 0.508 3.492 16 O -0.572 6.572 17 C -0.059 4.059 18 C 0.324 3.676 19 N -0.585 5.585 20 C 0.458 3.542 21 N -0.816 5.816 22 N -0.393 5.393 23 N -0.467 5.467 24 H 0.456 0.544 25 H 0.146 0.854 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.037 0.963 30 H 0.002 0.998 31 H 0.264 0.736 32 H 0.155 0.845 33 H 0.171 0.829 34 H 0.419 0.581 35 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.849 -9.894 11.652 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.070 4.070 3 C -0.081 4.081 4 C -0.016 4.016 5 N -0.326 5.326 6 C 0.140 3.860 7 C -0.573 4.573 8 H 0.073 0.927 9 C -0.189 4.189 10 N -0.568 5.568 11 Si 0.780 3.220 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.215 1.215 15 C 0.295 3.705 16 O -0.450 6.450 17 C -0.101 4.101 18 C 0.044 3.956 19 N -0.320 5.320 20 C 0.086 3.914 21 N -0.374 5.374 22 N -0.234 5.234 23 N -0.189 5.189 24 H 0.305 0.695 25 H 0.163 0.837 26 H 0.136 0.864 27 H 0.101 0.899 28 H 0.134 0.866 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.073 0.927 32 H 0.173 0.827 33 H 0.188 0.812 34 H 0.250 0.750 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.508 -10.044 11.864 17.263 hybrid contribution 0.996 0.244 -0.940 1.391 sum -6.512 -9.801 10.924 16.056 Atomic orbital electron populations 1.81276 1.14665 1.10764 1.10557 1.29189 0.94968 0.91402 0.91423 1.19889 0.79833 1.05371 1.02958 1.21623 0.78663 1.02432 0.98869 1.47989 1.06829 1.29607 1.48160 1.18778 0.91526 0.86441 0.89260 1.21818 1.35865 1.02106 0.97488 0.92748 1.25685 0.95445 0.95111 1.02617 1.70026 1.39493 1.10553 1.36726 0.85570 0.77543 0.78669 0.80255 1.19173 1.19930 1.21454 1.20613 0.87646 0.82387 0.79882 1.90767 1.16518 1.73816 1.63944 1.20537 0.94738 0.93233 1.01546 1.23648 0.94358 0.94741 0.82842 1.70225 1.10932 1.16165 1.34652 1.20871 0.91420 0.92028 0.87114 1.40966 1.31940 1.50784 1.13752 1.77977 1.07116 1.19186 1.19095 1.47389 1.26753 1.36818 1.07933 0.69492 0.83655 0.86436 0.89937 0.86585 0.94480 0.98021 0.92745 0.82731 0.81202 0.74994 0.74642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.15 18.54 20.00 0.37 -11.78 16 2 C 0.25 4.37 15.43 89.44 1.38 5.75 16 3 C -0.04 -0.52 6.03 28.79 0.17 -0.34 16 4 C 0.11 2.12 5.17 86.38 0.45 2.57 16 5 N -0.59 -19.07 2.46 -826.16 -2.03 -21.10 16 6 C 0.26 12.06 5.16 85.63 0.44 12.50 16 7 C -0.53 -28.24 9.39 25.60 0.24 -28.00 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.01 0.56 5.46 84.65 0.46 1.02 16 10 N -0.93 -53.49 13.29 21.45 0.28 -53.21 16 11 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 15 C 0.51 16.69 7.66 87.65 0.67 17.36 16 16 O -0.57 -26.68 15.14 -3.03 -0.05 -26.73 16 17 C -0.06 -1.09 4.88 29.10 0.14 -0.95 16 18 C 0.32 8.48 7.03 138.24 0.97 9.46 16 19 N -0.58 -19.97 10.56 -189.11 -2.00 -21.97 16 20 C 0.46 14.12 9.44 260.91 2.46 16.58 16 21 N -0.82 -18.82 9.13 -59.00 -0.54 -19.35 16 22 N -0.39 -11.20 12.82 -59.03 -0.76 -11.96 16 23 N -0.47 -10.24 7.43 -50.73 -0.38 -10.62 16 24 H 0.46 5.60 8.96 -213.11 -1.91 3.69 16 25 H 0.15 0.82 7.22 -2.38 -0.02 0.80 16 26 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.91 8.07 -2.38 -0.02 1.89 16 28 H 0.12 1.40 6.44 -2.39 -0.02 1.38 16 29 H 0.04 1.69 8.07 -2.38 -0.02 1.67 16 30 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 31 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.16 2.07 7.40 -2.38 -0.02 2.06 16 33 H 0.17 1.03 7.19 -2.38 -0.02 1.01 16 34 H 0.42 8.83 8.96 -92.71 -0.83 8.00 16 35 H 0.42 7.29 8.96 -92.72 -0.83 6.46 16 Total: -1.00 -86.89 318.81 1.94 -84.95 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -2.39 Total: 10.14 kcal Atomic # 6 Polarization: 28.55 SS G_CDS: 7.39 Total: 35.94 kcal Atomic # 7 Polarization: -144.94 SS G_CDS: -5.04 Total: -149.98 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -86.89 1.94 -84.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180247424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.871 kcal (2) G-P(sol) polarization free energy of solvation -86.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds