Wall clock time and date at job start Tue Mar 31 2020 00:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.84902 * 359.97438 * 7 2 1 9 9 C 1.53234 * 108.53590 * 128.63099 * 8 7 2 10 10 C 1.52961 * 109.40043 * 54.62618 * 9 8 7 11 11 H 1.09000 * 109.41464 * 56.44193 * 10 9 8 12 12 N 1.46506 * 109.40912 * 176.29622 * 10 9 8 13 13 C 1.34777 * 119.99414 * 204.99981 * 12 10 9 14 14 O 1.21577 * 120.00446 * 0.02562 * 13 12 10 15 15 N 1.34775 * 119.99439 * 180.02562 * 13 12 10 16 16 C 1.46501 * 119.99862 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.46957 * 179.97438 * 16 15 13 18 18 C 1.34512 * 125.78871 * 90.00203 * 17 16 15 19 19 C 1.41384 * 106.83821 * 179.97438 * 18 17 16 20 20 C 1.34511 * 106.84016 * 0.02562 * 19 18 17 21 21 O 1.34300 * 108.42347 * 359.73351 * 20 19 18 22 22 C 1.52956 * 109.81816 * 296.40209 * 10 9 8 23 23 C 1.51265 * 120.84832 * 179.71909 * 7 2 1 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.62830 * 248.34848 * 8 7 2 26 26 H 1.09001 * 109.62447 * 8.92144 * 8 7 2 27 27 H 1.08996 * 109.48445 * 174.60999 * 9 8 7 28 28 H 1.09007 * 109.47924 * 294.65005 * 9 8 7 29 29 H 0.96995 * 120.00214 * 25.00395 * 12 10 9 30 30 H 0.97008 * 120.00215 * 359.97438 * 15 13 12 31 31 H 1.08997 * 109.47021 * 299.99733 * 16 15 13 32 32 H 1.08997 * 109.47172 * 60.00173 * 16 15 13 33 33 H 1.08000 * 126.57877 * 0.03221 * 18 17 16 34 34 H 1.08005 * 126.58204 * 179.97438 * 19 18 17 35 35 H 1.08007 * 125.78896 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.48193 * 183.57771 * 22 10 9 37 37 H 1.08997 * 109.48452 * 303.60489 * 22 10 9 38 38 H 1.08998 * 109.62568 * 351.08456 * 23 7 2 39 39 H 1.09000 * 109.62624 * 111.65725 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 6 1.2677 -2.5152 -0.0005 9 6 1.8221 -3.3822 -1.1359 10 6 3.3392 -3.5066 -0.9858 11 1 3.5740 -3.9112 -0.0013 12 7 3.8584 -4.4068 -2.0185 13 6 5.0161 -5.0668 -1.8170 14 8 5.6293 -4.9157 -0.7781 15 7 5.4940 -5.8945 -2.7673 16 6 6.7521 -6.6125 -2.5481 17 6 7.0605 -7.4647 -3.7522 18 6 7.7725 -7.0801 -4.8266 19 6 7.8147 -8.1855 -5.7071 20 6 7.1255 -9.1793 -5.1182 21 8 6.6756 -8.7388 -3.9320 22 6 3.9899 -2.1306 -1.1368 23 6 3.5170 -1.2166 -0.0069 24 1 -0.4850 0.8401 0.0004 25 1 1.4205 -3.0197 0.9535 26 1 0.2035 -2.3408 -0.1593 27 1 1.3698 -4.3729 -1.0909 28 1 1.5884 -2.9188 -2.0945 29 1 3.3691 -4.5276 -2.8472 30 1 5.0046 -6.0155 -3.5961 31 1 7.5579 -5.8948 -2.3944 32 1 6.6590 -7.2483 -1.6677 33 1 8.2258 -6.1128 -4.9857 34 1 8.3055 -8.2243 -6.6684 35 1 6.9654 -10.1658 -5.5277 36 1 5.0741 -2.2343 -1.0924 37 1 3.7051 -1.6970 -2.0954 38 1 3.8974 -0.2082 -0.1697 39 1 3.8815 -1.5989 0.9465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188183763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:12 Heat of formation + Delta-G solvation = -27.212929 kcal Electronic energy + Delta-G solvation = -21108.284852 eV Core-core repulsion = 17824.060558 eV Total energy + Delta-G solvation = -3284.224294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.88589 -39.77458 -37.00480 -34.90208 -33.66766 -33.24606 -31.65639 -30.33473 -29.63212 -27.29629 -25.66366 -22.27566 -22.06738 -21.46111 -20.86214 -20.50993 -19.49501 -18.41383 -17.44170 -16.54382 -16.07575 -15.75568 -15.35622 -14.69031 -14.43208 -14.31831 -13.90146 -13.39705 -13.14564 -13.11401 -12.94261 -12.70446 -12.35403 -12.13766 -12.05223 -11.57380 -10.96963 -10.81017 -10.68463 -10.28126 -10.17770 -10.00874 -9.86878 -9.50372 -9.17402 -8.99161 -8.87550 -8.76761 -8.46782 -8.20480 -6.08642 -3.99086 1.28853 2.23330 2.61255 3.12142 3.29802 3.37626 3.39278 3.49554 4.30391 4.40491 4.53427 4.70475 4.73824 5.16854 5.19413 5.36127 5.47985 5.63129 5.75182 5.75806 5.93661 6.15013 6.24708 6.40352 6.51443 6.53973 6.74429 6.79038 6.80930 6.92920 6.99424 7.09769 7.19483 7.35735 7.48355 7.67874 7.74189 7.83008 8.28598 8.40497 8.88188 8.98211 9.56496 11.00883 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040435 B = 0.003118 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.307928 B = 8978.819335 C = 9203.084420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.291 1.291 7 C -0.487 4.487 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.171 3.829 11 H 0.078 0.922 12 N -0.737 5.737 13 C 0.703 3.297 14 O -0.590 6.590 15 N -0.752 5.752 16 C 0.223 3.777 17 C -0.032 4.032 18 C -0.187 4.187 19 C -0.218 4.218 20 C -0.033 4.033 21 O -0.171 6.171 22 C -0.113 4.113 23 C -0.019 4.019 24 H 0.264 0.736 25 H 0.007 0.993 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.390 0.610 30 H 0.396 0.604 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.204 0.796 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.933 -15.089 -11.905 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.217 1.217 7 C -0.506 4.506 8 C -0.025 4.025 9 C -0.152 4.152 10 C 0.068 3.932 11 H 0.096 0.904 12 N -0.390 5.390 13 C 0.403 3.597 14 O -0.468 6.468 15 N -0.410 5.410 16 C 0.099 3.901 17 C -0.082 4.082 18 C -0.207 4.207 19 C -0.238 4.238 20 C -0.102 4.102 21 O -0.067 6.067 22 C -0.152 4.152 23 C -0.058 4.058 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.223 0.777 30 H 0.230 0.770 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.220 0.780 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.155 -14.973 -10.680 22.045 hybrid contribution 0.152 0.773 -1.249 1.477 sum 12.307 -14.200 -11.929 22.257 Atomic orbital electron populations 1.69836 1.06134 1.26895 1.50110 1.24844 0.94712 0.98579 0.94571 0.86676 0.79996 0.83230 0.78558 1.20389 1.18919 1.21726 1.20070 0.89439 0.91451 1.49618 1.19347 0.98684 0.92791 0.91701 1.21939 0.92397 0.98584 1.02306 1.20952 0.94049 0.88427 0.89767 0.90387 1.45636 1.23157 1.48014 1.22214 1.15965 0.81700 0.78746 0.83307 1.90920 1.60091 1.68955 1.26867 1.45181 1.25738 1.49228 1.20892 1.19340 0.87085 0.92057 0.91639 1.22421 1.02748 0.83659 0.99361 1.21740 1.03751 1.00927 0.94247 1.21891 1.05568 0.93884 1.02410 1.24127 1.00592 1.00669 0.84765 1.84060 1.61305 1.26279 1.35039 1.21836 0.97387 0.95268 1.00689 1.19728 0.96520 0.95510 0.93995 0.92632 0.97484 0.92088 0.94616 0.92772 0.77743 0.77028 0.88506 0.89978 0.83109 0.83274 0.77966 0.94434 0.93242 0.94674 0.96262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 12.73 55.43 0.71 -24.82 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.18 27.54 -169.99 -4.68 16.50 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.26 -6.12 6.09 56.52 0.34 -5.78 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.49 -12.83 5.52 -98.92 -0.55 -13.38 16 8 C 0.01 0.31 5.97 -27.48 -0.16 0.15 16 9 C -0.11 -2.32 5.40 -26.63 -0.14 -2.47 16 10 C 0.17 3.40 2.35 -67.97 -0.16 3.24 16 11 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 12 N -0.74 -11.87 5.08 -58.72 -0.30 -12.17 16 13 C 0.70 11.61 8.52 -86.92 -0.74 10.87 16 14 O -0.59 -12.20 16.01 5.30 0.08 -12.12 16 15 N -0.75 -9.16 5.55 -66.41 -0.37 -9.53 16 16 C 0.22 2.46 6.20 -5.19 -0.03 2.43 16 17 C -0.03 -0.32 6.69 -35.62 -0.24 -0.55 16 18 C -0.19 -1.68 10.81 -39.70 -0.43 -2.11 16 19 C -0.22 -1.70 10.91 -39.70 -0.43 -2.13 16 20 C -0.03 -0.25 12.09 29.41 0.36 0.11 16 21 O -0.17 -1.74 10.65 5.72 0.06 -1.67 16 22 C -0.11 -2.41 5.49 -26.84 -0.15 -2.56 16 23 C -0.02 -0.47 5.56 -27.69 -0.15 -0.62 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 29 H 0.39 5.09 8.61 -40.82 -0.35 4.74 16 30 H 0.40 3.91 8.48 -40.82 -0.35 3.57 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.15 0.84 8.06 -52.48 -0.42 0.41 16 35 H 0.20 0.75 8.06 -52.48 -0.42 0.32 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.03 0.84 4.59 -51.93 -0.24 0.60 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -31.74 322.80 -8.10 -39.84 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.54 Total: 4.16 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.93 Total: -5.06 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.04 Total: -46.52 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.15 Total: -13.79 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.68 Total: 16.50 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.74 -8.10 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188183763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.626 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds