Wall clock time and date at job start Tue Mar 31 2020 00:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.84902 * 359.97438 * 7 2 1 9 9 C 1.53234 * 108.53590 * 128.63099 * 8 7 2 10 10 C 1.52961 * 109.40043 * 54.62618 * 9 8 7 11 11 H 1.09000 * 109.41464 * 56.44193 * 10 9 8 12 12 N 1.46506 * 109.40912 * 176.29622 * 10 9 8 13 13 C 1.34777 * 119.99414 * 204.99981 * 12 10 9 14 14 O 1.21577 * 120.00446 * 0.02562 * 13 12 10 15 15 N 1.34775 * 119.99439 * 180.02562 * 13 12 10 16 16 C 1.46501 * 119.99862 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.46957 * 179.97438 * 16 15 13 18 18 C 1.34512 * 125.78871 * 90.00203 * 17 16 15 19 19 C 1.41384 * 106.83821 * 179.97438 * 18 17 16 20 20 C 1.34511 * 106.84016 * 0.02562 * 19 18 17 21 21 O 1.34300 * 108.42347 * 359.73351 * 20 19 18 22 22 C 1.52956 * 109.81816 * 296.40209 * 10 9 8 23 23 C 1.51265 * 120.84832 * 179.71909 * 7 2 1 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.62830 * 248.34848 * 8 7 2 26 26 H 1.09001 * 109.62447 * 8.92144 * 8 7 2 27 27 H 1.08996 * 109.48445 * 174.60999 * 9 8 7 28 28 H 1.09007 * 109.47924 * 294.65005 * 9 8 7 29 29 H 0.96995 * 120.00214 * 25.00395 * 12 10 9 30 30 H 0.97008 * 120.00215 * 359.97438 * 15 13 12 31 31 H 1.08997 * 109.47021 * 299.99733 * 16 15 13 32 32 H 1.08997 * 109.47172 * 60.00173 * 16 15 13 33 33 H 1.08000 * 126.57877 * 0.03221 * 18 17 16 34 34 H 1.08005 * 126.58204 * 179.97438 * 19 18 17 35 35 H 1.08007 * 125.78896 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.48193 * 183.57771 * 22 10 9 37 37 H 1.08997 * 109.48452 * 303.60489 * 22 10 9 38 38 H 1.08998 * 109.62568 * 351.08456 * 23 7 2 39 39 H 1.09000 * 109.62624 * 111.65725 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 6 1.2677 -2.5152 -0.0005 9 6 1.8221 -3.3822 -1.1359 10 6 3.3392 -3.5066 -0.9858 11 1 3.5740 -3.9112 -0.0013 12 7 3.8584 -4.4068 -2.0185 13 6 5.0161 -5.0668 -1.8170 14 8 5.6293 -4.9157 -0.7781 15 7 5.4940 -5.8945 -2.7673 16 6 6.7521 -6.6125 -2.5481 17 6 7.0605 -7.4647 -3.7522 18 6 7.7725 -7.0801 -4.8266 19 6 7.8147 -8.1855 -5.7071 20 6 7.1255 -9.1793 -5.1182 21 8 6.6756 -8.7388 -3.9320 22 6 3.9899 -2.1306 -1.1368 23 6 3.5170 -1.2166 -0.0069 24 1 -0.4850 0.8401 0.0004 25 1 1.4205 -3.0197 0.9535 26 1 0.2035 -2.3408 -0.1593 27 1 1.3698 -4.3729 -1.0909 28 1 1.5884 -2.9188 -2.0945 29 1 3.3691 -4.5276 -2.8472 30 1 5.0046 -6.0155 -3.5961 31 1 7.5579 -5.8948 -2.3944 32 1 6.6590 -7.2483 -1.6677 33 1 8.2258 -6.1128 -4.9857 34 1 8.3055 -8.2243 -6.6684 35 1 6.9654 -10.1658 -5.5277 36 1 5.0741 -2.2343 -1.0924 37 1 3.7051 -1.6970 -2.0954 38 1 3.8974 -0.2082 -0.1697 39 1 3.8815 -1.5989 0.9465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188183763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:12 Heat of formation + Delta-G solvation = -48.827379 kcal Electronic energy + Delta-G solvation = -21109.222125 eV Core-core repulsion = 17824.060558 eV Total energy + Delta-G solvation = -3285.161567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.53942 -41.12508 -38.65922 -36.06240 -35.34766 -33.93647 -33.39386 -31.53670 -31.22349 -28.93937 -26.65839 -24.03614 -23.28376 -22.69691 -21.87743 -21.56100 -21.22516 -19.58539 -18.38957 -17.82949 -17.47511 -16.84429 -16.53866 -16.36139 -15.70248 -15.64295 -15.13153 -14.84272 -14.59273 -14.31265 -14.11505 -13.91982 -13.75962 -13.53428 -13.38434 -12.98812 -12.77138 -12.65005 -12.53388 -11.92762 -11.82717 -11.42673 -11.35273 -10.90322 -10.85107 -10.68963 -10.53554 -10.29619 -9.69460 -9.53889 -8.15724 -6.09904 0.59277 1.40209 1.43121 1.51102 1.56797 1.85998 2.12616 2.18336 2.42509 3.10668 3.39371 3.63327 4.06736 4.11639 4.15041 4.23886 4.38624 4.52028 4.53290 4.73404 4.88241 4.89516 5.00530 5.01158 5.09845 5.14344 5.16017 5.26489 5.27183 5.36000 5.57208 5.57946 5.61466 5.72492 5.77223 5.83761 6.04261 6.17132 6.36962 6.95709 7.11783 7.48239 7.60440 8.94797 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040435 B = 0.003118 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.307928 B = 8978.819335 C = 9203.084420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.251 1.251 6 H -0.290 1.290 7 C -0.498 4.498 8 C 0.008 3.992 9 C -0.100 4.100 10 C 0.184 3.816 11 H 0.055 0.945 12 N -0.727 5.727 13 C 0.702 3.298 14 O -0.634 6.634 15 N -0.733 5.733 16 C 0.225 3.775 17 C -0.052 4.052 18 C -0.185 4.185 19 C -0.230 4.230 20 C -0.027 4.027 21 O -0.190 6.190 22 C -0.105 4.105 23 C -0.021 4.021 24 H 0.263 0.737 25 H -0.003 1.003 26 H 0.034 0.966 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.408 0.592 30 H 0.410 0.590 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.239 0.761 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.362 -16.163 -14.052 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.175 1.175 6 H -0.216 1.216 7 C -0.517 4.517 8 C -0.030 4.030 9 C -0.138 4.138 10 C 0.080 3.920 11 H 0.073 0.927 12 N -0.381 5.381 13 C 0.402 3.598 14 O -0.515 6.515 15 N -0.390 5.390 16 C 0.102 3.898 17 C -0.102 4.102 18 C -0.205 4.205 19 C -0.249 4.249 20 C -0.095 4.095 21 O -0.086 6.086 22 C -0.144 4.144 23 C -0.059 4.059 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.244 0.756 30 H 0.246 0.754 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.178 0.822 34 H 0.189 0.811 35 H 0.255 0.745 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 13.595 -16.081 -12.888 24.689 hybrid contribution -0.265 0.983 -0.603 1.183 sum 13.330 -15.098 -13.492 24.242 Atomic orbital electron populations 1.69957 1.07506 1.27482 1.51979 1.25564 0.95353 1.01635 0.94811 0.85849 0.79399 0.79751 0.78560 1.20344 1.17520 1.21621 1.20605 0.90842 0.92031 1.48268 1.19312 0.97343 0.93376 0.93006 1.21697 0.92741 0.98890 1.00467 1.20503 0.93469 0.88248 0.89824 0.92714 1.45221 1.23363 1.47382 1.22159 1.16059 0.81377 0.79004 0.83328 1.90897 1.61278 1.70409 1.28895 1.45005 1.25947 1.47742 1.20343 1.19297 0.86323 0.92065 0.92158 1.22153 1.04523 0.83999 0.99496 1.22001 1.02771 1.01714 0.94002 1.22222 1.05974 0.93447 1.03244 1.24914 0.99129 1.01930 0.83510 1.84046 1.61924 1.26316 1.36355 1.21714 0.97489 0.95531 0.99689 1.19728 0.95042 0.96328 0.94824 0.92752 0.98438 0.94694 0.92320 0.92334 0.75598 0.75381 0.88400 0.90938 0.82228 0.81144 0.74509 0.94223 0.92677 0.94523 0.96907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.14 12.73 21.45 0.27 -53.87 16 2 C 0.02 1.36 5.46 84.66 0.46 1.82 16 3 Si 0.94 43.33 27.54 68.60 1.89 45.22 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.25 -10.94 6.09 99.48 0.61 -10.33 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 7 C -0.50 -26.35 5.52 -16.17 -0.09 -26.44 16 8 C 0.01 0.38 5.97 30.11 0.18 0.56 16 9 C -0.10 -3.95 5.40 30.66 0.17 -3.79 16 10 C 0.18 7.12 2.35 44.96 0.11 7.23 16 11 H 0.05 2.41 7.58 -2.39 -0.02 2.39 16 12 N -0.73 -21.99 5.08 -457.94 -2.33 -24.32 16 13 C 0.70 22.24 8.52 179.05 1.53 23.76 16 14 O -0.63 -25.90 16.01 -3.96 -0.06 -25.97 16 15 N -0.73 -16.60 5.55 -482.30 -2.68 -19.28 16 16 C 0.23 4.76 6.20 85.63 0.53 5.29 16 17 C -0.05 -0.96 6.69 24.83 0.17 -0.79 16 18 C -0.18 -2.93 10.81 22.19 0.24 -2.69 16 19 C -0.23 -2.92 10.91 22.19 0.24 -2.68 16 20 C -0.03 -0.33 12.09 66.97 0.81 0.48 16 21 O -0.19 -3.50 10.65 -2.45 -0.03 -3.52 16 22 C -0.11 -4.36 5.49 30.52 0.17 -4.19 16 23 C -0.02 -1.00 5.56 29.97 0.17 -0.84 16 24 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 25 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.03 1.90 7.07 -2.39 -0.02 1.88 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.41 9.50 8.61 -92.71 -0.80 8.70 16 30 H 0.41 7.12 8.48 -92.70 -0.79 6.33 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.24 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.70 4.59 -2.39 -0.01 1.69 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -68.73 322.80 1.14 -67.60 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.61 Total: 16.41 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.67 Total: -2.26 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -4.73 Total: -97.47 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.09 Total: -29.49 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.89 Total: 45.22 kcal Total: -68.73 1.14 -67.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188183763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.771 kcal (2) G-P(sol) polarization free energy of solvation -68.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds