Wall clock time and date at job start Tue Mar 31 2020 00:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47025 * 270.26377 * 3 2 1 5 5 H 1.48502 * 109.46817 * 30.26012 * 3 2 1 6 6 H 1.48496 * 109.46971 * 150.26011 * 3 2 1 7 7 C 1.37874 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99573 * 0.81871 * 7 2 1 9 9 C 1.50691 * 120.00504 * 180.82695 * 7 2 1 10 10 N 1.46504 * 110.67306 * 65.53738 * 9 7 2 11 11 C 1.34780 * 120.00033 * 52.39000 * 10 9 7 12 12 O 1.21584 * 119.99611 * 4.47310 * 11 10 9 13 13 N 1.34769 * 120.00012 * 184.47303 * 11 10 9 14 14 C 1.46496 * 119.99950 * 175.07213 * 13 11 10 15 15 C 1.50702 * 109.47367 * 184.97180 * 14 13 11 16 16 C 1.34522 * 125.78562 * 89.71150 * 15 14 13 17 17 C 1.41380 * 106.83783 * 179.89163 * 16 15 14 18 18 C 1.34513 * 106.84397 * 0.37218 * 17 16 15 19 19 O 1.34297 * 125.79458 * 270.02585 * 15 14 13 20 20 C 1.54889 * 110.92026 * 188.88455 * 9 7 2 21 21 C 1.54264 * 104.19971 * 156.32987 * 20 9 7 22 22 C 1.53876 * 106.59832 * 336.39153 * 21 20 9 23 23 C 1.54273 * 106.59551 * 359.97438 * 22 21 20 24 24 H 0.96999 * 120.00020 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00139 * 232.39597 * 10 9 7 26 26 H 0.97004 * 120.00272 * 355.06360 * 13 11 10 27 27 H 1.09004 * 109.47321 * 304.96918 * 14 13 11 28 28 H 1.09001 * 109.47622 * 64.97069 * 14 13 11 29 29 H 1.07992 * 126.58097 * 0.03322 * 16 15 14 30 30 H 1.08003 * 126.58268 * 180.16498 * 17 16 15 31 31 H 1.08003 * 125.79746 * 179.74621 * 18 17 16 32 32 H 1.09000 * 110.48096 * 37.64604 * 20 9 7 33 33 H 1.09001 * 110.48406 * 275.01256 * 20 9 7 34 34 H 1.08998 * 110.02971 * 217.10511 * 21 20 9 35 35 H 1.08994 * 110.03036 * 95.67609 * 21 20 9 36 36 H 1.08996 * 110.03181 * 119.28265 * 22 21 20 37 37 H 1.09000 * 110.03245 * 240.66777 * 22 21 20 38 38 H 1.09003 * 110.47938 * 142.29017 * 23 22 21 39 39 H 1.09000 * 110.48159 * 264.92991 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4910 2.0497 -1.4000 5 1 1.4493 2.6511 0.7056 6 1 3.5494 1.4387 0.6945 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0143 9 6 3.5114 -1.1941 0.0183 10 7 4.0129 -0.6361 1.2766 11 6 3.5696 -1.1216 2.4532 12 8 2.8162 -2.0756 2.4720 13 7 3.9615 -0.5495 3.6088 14 6 3.3966 -1.0066 4.8809 15 6 3.9028 -0.1316 5.9986 16 6 3.3185 0.9966 6.4407 17 6 4.1231 1.4891 7.4936 18 6 5.1554 0.6370 7.6266 19 8 5.0167 -0.3427 6.7184 20 6 4.0672 -2.6218 -0.2092 21 6 5.4888 -2.3908 -0.7619 22 6 5.4941 -0.9850 -1.3875 23 6 4.0753 -0.4110 -1.1935 24 1 -0.4850 0.8400 0.0004 25 1 4.6641 0.0828 1.2630 26 1 4.6176 0.1649 3.5983 27 1 2.3090 -0.9478 4.8376 28 1 3.6978 -2.0383 5.0623 29 1 2.4081 1.4396 6.0650 30 1 3.9452 2.3805 8.0769 31 1 5.9597 0.7258 8.3420 32 1 3.4572 -3.1571 -0.9368 33 1 4.1083 -3.1696 0.7323 34 1 5.7202 -3.1381 -1.5209 35 1 6.2170 -2.4421 0.0474 36 1 6.2249 -0.3540 -0.8816 37 1 5.7290 -1.0499 -2.4499 38 1 4.1224 0.6548 -0.9700 39 1 3.4672 -0.5894 -2.0803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188199716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:12 Heat of formation + Delta-G solvation = -0.993842 kcal Electronic energy + Delta-G solvation = -22227.963469 eV Core-core repulsion = 18944.876120 eV Total energy + Delta-G solvation = -3283.087349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.62274 -39.34864 -37.27019 -34.30940 -32.97511 -32.73931 -32.02631 -30.08455 -28.12200 -27.87344 -25.43033 -23.72726 -21.80719 -20.77600 -20.46560 -19.96645 -18.86541 -17.93970 -17.06111 -16.61945 -16.09066 -15.29042 -15.05173 -14.80342 -14.64840 -14.04316 -13.71973 -13.38904 -12.91668 -12.85661 -12.71691 -12.54432 -12.50082 -12.32647 -11.84823 -11.22540 -10.95990 -10.70372 -10.55470 -10.24657 -10.01040 -9.92990 -9.79820 -9.65182 -9.20670 -8.97876 -8.61090 -8.51949 -8.43540 -7.55414 -6.03369 -4.01257 1.57022 2.50225 2.89426 3.24372 3.28837 3.37751 3.69185 4.30501 4.42885 4.60599 4.95796 4.99502 5.03342 5.32830 5.42148 5.50985 5.54401 5.59545 5.71241 5.80691 5.93265 6.04844 6.15209 6.25155 6.37174 6.41732 6.42935 6.48269 6.57263 6.79812 6.85545 6.98429 7.04005 7.07633 7.18964 7.55405 7.79781 7.94818 8.55122 9.03002 9.09975 9.59387 9.70861 11.09621 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.005690 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.922340 B = 4919.934374 C = 5553.274704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.258 1.258 7 C -0.481 4.481 8 H 0.079 0.921 9 C 0.279 3.721 10 N -0.729 5.729 11 C 0.706 3.294 12 O -0.565 6.565 13 N -0.762 5.762 14 C 0.224 3.776 15 C -0.024 4.024 16 C -0.191 4.191 17 C -0.216 4.216 18 C -0.041 4.041 19 O -0.173 6.173 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.133 4.133 24 H 0.261 0.739 25 H 0.371 0.629 26 H 0.388 0.612 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.202 0.798 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.474 3.215 9.567 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.184 1.184 7 C -0.520 4.520 8 H 0.097 0.903 9 C 0.196 3.804 10 N -0.384 5.384 11 C 0.406 3.594 12 O -0.440 6.440 13 N -0.422 5.422 14 C 0.100 3.900 15 C -0.074 4.074 16 C -0.211 4.211 17 C -0.235 4.235 18 C -0.109 4.109 19 O -0.069 6.069 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.172 4.172 24 H 0.071 0.929 25 H 0.204 0.796 26 H 0.221 0.779 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.218 0.782 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.747 2.140 9.469 15.239 hybrid contribution 0.899 2.143 0.277 2.341 sum 12.646 4.283 9.746 16.530 Atomic orbital electron populations 1.69928 1.06354 1.26651 1.50041 1.25018 0.94567 0.98924 0.94249 0.87085 0.79954 0.83648 0.77560 1.21256 1.23116 1.18360 1.20970 0.87705 0.94640 1.48666 0.90256 1.19130 0.93864 0.88885 0.78498 1.46478 1.46662 1.39942 1.05283 1.15863 0.80988 0.82838 0.79702 1.90890 1.38860 1.28450 1.85774 1.45356 1.49083 1.42845 1.04873 1.19300 0.98213 0.95197 0.77301 1.22597 0.87952 0.99055 0.97830 1.21757 1.03025 0.96819 0.99506 1.21862 0.97026 1.02780 1.01878 1.24049 1.01880 0.89209 0.95769 1.84045 1.39058 1.44522 1.39232 1.22559 0.93528 0.98739 1.00443 1.22147 0.98700 0.96199 0.98974 1.22166 0.97626 0.96621 0.99650 1.22979 0.95106 0.98525 1.00565 0.92888 0.79645 0.77944 0.88479 0.90562 0.83149 0.83466 0.78178 0.91451 0.91783 0.92994 0.93124 0.93105 0.92720 0.92998 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.08 2.14 5.46 -17.82 -0.10 2.04 16 3 Si 0.89 21.28 23.89 -169.99 -4.06 17.22 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.26 -5.48 4.47 56.52 0.25 -5.22 16 7 C -0.48 -13.43 7.13 -34.45 -0.25 -13.67 16 8 H 0.08 2.53 8.04 -52.48 -0.42 2.11 16 9 C 0.28 6.27 0.20 -130.97 -0.03 6.25 16 10 N -0.73 -15.11 3.30 -51.62 -0.17 -15.28 16 11 C 0.71 15.29 7.94 -86.92 -0.69 14.60 16 12 O -0.56 -14.64 14.24 5.29 0.08 -14.57 16 13 N -0.76 -13.10 5.55 -66.42 -0.37 -13.47 16 14 C 0.22 3.49 6.21 -5.19 -0.03 3.46 16 15 C -0.02 -0.33 6.69 -35.62 -0.24 -0.57 16 16 C -0.19 -2.45 10.81 -39.70 -0.43 -2.87 16 17 C -0.22 -2.32 10.91 -39.70 -0.43 -2.75 16 18 C -0.04 -0.41 12.09 29.42 0.36 -0.06 16 19 O -0.17 -2.24 10.65 5.72 0.06 -2.18 16 20 C -0.11 -2.35 5.72 -25.07 -0.14 -2.50 16 21 C -0.12 -2.03 6.78 -25.61 -0.17 -2.21 16 22 C -0.12 -1.99 6.78 -25.61 -0.17 -2.16 16 23 C -0.13 -2.66 4.37 -25.06 -0.11 -2.77 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.37 6.74 7.27 -40.82 -0.30 6.45 16 26 H 0.39 5.75 8.49 -40.82 -0.35 5.41 16 27 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 31 H 0.20 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 33 H 0.06 1.42 6.98 -51.93 -0.36 1.05 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.03 4.44 -51.93 -0.23 0.80 16 39 H 0.08 1.71 8.04 -51.93 -0.42 1.29 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -33.50 314.00 -6.98 -40.47 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -5.58 Total: 12.97 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.44 Total: -3.20 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.23 Total: -55.46 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.14 Total: -16.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.06 Total: 17.22 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.50 -6.98 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188199716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.480 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds