Wall clock time and date at job start Tue Mar 31 2020 00:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47025 * 270.26377 * 3 2 1 5 5 H 1.48502 * 109.46817 * 30.26012 * 3 2 1 6 6 H 1.48496 * 109.46971 * 150.26011 * 3 2 1 7 7 C 1.37874 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99573 * 0.81871 * 7 2 1 9 9 C 1.50691 * 120.00504 * 180.82695 * 7 2 1 10 10 N 1.46504 * 110.67306 * 65.53738 * 9 7 2 11 11 C 1.34780 * 120.00033 * 52.39000 * 10 9 7 12 12 O 1.21584 * 119.99611 * 4.47310 * 11 10 9 13 13 N 1.34769 * 120.00012 * 184.47303 * 11 10 9 14 14 C 1.46496 * 119.99950 * 175.07213 * 13 11 10 15 15 C 1.50702 * 109.47367 * 184.97180 * 14 13 11 16 16 C 1.34522 * 125.78562 * 89.71150 * 15 14 13 17 17 C 1.41380 * 106.83783 * 179.89163 * 16 15 14 18 18 C 1.34513 * 106.84397 * 0.37218 * 17 16 15 19 19 O 1.34297 * 125.79458 * 270.02585 * 15 14 13 20 20 C 1.54889 * 110.92026 * 188.88455 * 9 7 2 21 21 C 1.54264 * 104.19971 * 156.32987 * 20 9 7 22 22 C 1.53876 * 106.59832 * 336.39153 * 21 20 9 23 23 C 1.54273 * 106.59551 * 359.97438 * 22 21 20 24 24 H 0.96999 * 120.00020 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00139 * 232.39597 * 10 9 7 26 26 H 0.97004 * 120.00272 * 355.06360 * 13 11 10 27 27 H 1.09004 * 109.47321 * 304.96918 * 14 13 11 28 28 H 1.09001 * 109.47622 * 64.97069 * 14 13 11 29 29 H 1.07992 * 126.58097 * 0.03322 * 16 15 14 30 30 H 1.08003 * 126.58268 * 180.16498 * 17 16 15 31 31 H 1.08003 * 125.79746 * 179.74621 * 18 17 16 32 32 H 1.09000 * 110.48096 * 37.64604 * 20 9 7 33 33 H 1.09001 * 110.48406 * 275.01256 * 20 9 7 34 34 H 1.08998 * 110.02971 * 217.10511 * 21 20 9 35 35 H 1.08994 * 110.03036 * 95.67609 * 21 20 9 36 36 H 1.08996 * 110.03181 * 119.28265 * 22 21 20 37 37 H 1.09000 * 110.03245 * 240.66777 * 22 21 20 38 38 H 1.09003 * 110.47938 * 142.29017 * 23 22 21 39 39 H 1.09000 * 110.48159 * 264.92991 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4910 2.0497 -1.4000 5 1 1.4493 2.6511 0.7056 6 1 3.5494 1.4387 0.6945 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0143 9 6 3.5114 -1.1941 0.0183 10 7 4.0129 -0.6361 1.2766 11 6 3.5696 -1.1216 2.4532 12 8 2.8162 -2.0756 2.4720 13 7 3.9615 -0.5495 3.6088 14 6 3.3966 -1.0066 4.8809 15 6 3.9028 -0.1316 5.9986 16 6 3.3185 0.9966 6.4407 17 6 4.1231 1.4891 7.4936 18 6 5.1554 0.6370 7.6266 19 8 5.0167 -0.3427 6.7184 20 6 4.0672 -2.6218 -0.2092 21 6 5.4888 -2.3908 -0.7619 22 6 5.4941 -0.9850 -1.3875 23 6 4.0753 -0.4110 -1.1935 24 1 -0.4850 0.8400 0.0004 25 1 4.6641 0.0828 1.2630 26 1 4.6176 0.1649 3.5983 27 1 2.3090 -0.9478 4.8376 28 1 3.6978 -2.0383 5.0623 29 1 2.4081 1.4396 6.0650 30 1 3.9452 2.3805 8.0769 31 1 5.9597 0.7258 8.3420 32 1 3.4572 -3.1571 -0.9368 33 1 4.1083 -3.1696 0.7323 34 1 5.7202 -3.1381 -1.5209 35 1 6.2170 -2.4421 0.0474 36 1 6.2249 -0.3540 -0.8816 37 1 5.7290 -1.0499 -2.4499 38 1 4.1224 0.6548 -0.9700 39 1 3.4672 -0.5894 -2.0803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188199716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:11 Heat of formation + Delta-G solvation = -26.119543 kcal Electronic energy + Delta-G solvation = -22229.053001 eV Core-core repulsion = 18944.876120 eV Total energy + Delta-G solvation = -3284.176881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.54693 -41.06846 -38.87781 -35.81495 -34.63801 -34.06830 -33.80871 -31.31079 -29.74068 -29.49075 -26.69337 -25.62698 -22.70487 -22.31471 -21.58119 -21.48725 -20.54829 -19.41649 -18.61870 -18.15479 -17.21237 -16.95890 -16.63996 -16.25282 -16.05701 -15.48031 -15.22450 -14.90784 -14.73444 -14.28909 -14.14399 -13.86030 -13.78548 -13.52429 -13.05878 -12.94475 -12.77944 -12.36597 -12.19244 -11.87623 -11.69923 -11.45257 -11.13609 -11.07229 -10.96147 -10.87873 -10.62306 -10.08474 -9.53758 -9.31389 -8.23666 -6.27595 0.60520 1.29696 1.35273 1.46334 1.60369 1.91399 2.22856 2.37835 2.57978 3.13441 3.63595 3.67289 3.96190 3.99527 4.09620 4.14790 4.16945 4.39177 4.53748 4.66221 4.85510 4.86589 4.87564 4.95895 5.00050 5.00088 5.12427 5.19687 5.22878 5.28951 5.49596 5.53373 5.56243 5.61377 5.69389 6.04632 6.16028 6.17589 6.48820 6.77308 7.36687 7.43344 8.01007 8.94246 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.005690 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.922340 B = 4919.934374 C = 5553.274704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.317 1.317 6 H -0.213 1.213 7 C -0.484 4.484 8 H 0.013 0.987 9 C 0.275 3.725 10 N -0.720 5.720 11 C 0.701 3.299 12 O -0.617 6.617 13 N -0.744 5.744 14 C 0.228 3.772 15 C -0.046 4.046 16 C -0.193 4.193 17 C -0.227 4.227 18 C -0.024 4.024 19 O -0.185 6.185 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.133 4.133 24 H 0.260 0.740 25 H 0.391 0.609 26 H 0.404 0.596 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.173 0.827 31 H 0.245 0.755 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.882 5.660 10.438 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.246 1.246 6 H -0.136 1.136 7 C -0.523 4.523 8 H 0.031 0.969 9 C 0.191 3.809 10 N -0.376 5.376 11 C 0.401 3.599 12 O -0.495 6.495 13 N -0.404 5.404 14 C 0.104 3.896 15 C -0.096 4.096 16 C -0.214 4.214 17 C -0.246 4.246 18 C -0.091 4.091 19 O -0.082 6.082 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.150 4.150 23 C -0.171 4.171 24 H 0.069 0.931 25 H 0.227 0.773 26 H 0.240 0.760 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.190 0.810 31 H 0.261 0.739 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.227 4.604 10.357 19.793 hybrid contribution -0.541 1.257 0.129 1.375 sum 15.687 5.861 10.486 19.758 Atomic orbital electron populations 1.70132 1.08827 1.27589 1.52853 1.25991 0.95316 1.03488 0.93830 0.86030 0.80034 0.77269 0.78725 1.19487 1.24589 1.13629 1.21121 0.91000 0.92093 1.48057 0.96902 1.19018 0.90612 0.91151 0.80159 1.45978 1.46845 1.40324 1.04472 1.16065 0.80470 0.82470 0.80854 1.90872 1.41167 1.30850 1.86655 1.45107 1.48702 1.42441 1.04139 1.19141 0.97311 0.95721 0.77448 1.22068 0.89404 0.99550 0.98546 1.21964 1.03005 0.96438 0.99943 1.22177 0.96806 1.03994 1.01626 1.24963 1.02228 0.87360 0.94573 1.84033 1.38628 1.45665 1.39845 1.22476 0.96568 0.97257 0.99123 1.22079 0.95338 0.97548 0.99945 1.22135 0.95207 0.95894 1.01742 1.22883 0.97488 0.98646 0.98123 0.93142 0.77294 0.76050 0.90266 0.90922 0.83379 0.80984 0.73869 0.93430 0.94157 0.90924 0.91585 0.90190 0.90150 0.92126 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.27 13.96 21.45 0.30 -61.97 16 2 C 0.01 0.61 5.46 84.65 0.46 1.07 16 3 Si 0.95 43.62 23.89 68.60 1.64 45.26 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.32 -15.24 7.11 99.48 0.71 -14.54 16 6 H -0.21 -8.01 4.47 99.48 0.45 -7.56 16 7 C -0.48 -28.50 7.13 25.60 0.18 -28.32 16 8 H 0.01 0.89 8.04 -2.91 -0.02 0.86 16 9 C 0.27 12.32 0.20 4.15 0.00 12.32 16 10 N -0.72 -28.76 3.30 -435.49 -1.44 -30.20 16 11 C 0.70 30.52 7.94 179.06 1.42 31.94 16 12 O -0.62 -33.59 14.24 -3.98 -0.06 -33.65 16 13 N -0.74 -25.02 5.55 -482.31 -2.68 -27.70 16 14 C 0.23 7.20 6.21 85.63 0.53 7.73 16 15 C -0.05 -1.20 6.69 24.84 0.17 -1.04 16 16 C -0.19 -4.65 10.81 22.19 0.24 -4.41 16 17 C -0.23 -4.13 10.91 22.19 0.24 -3.89 16 18 C -0.02 -0.39 12.09 66.97 0.81 0.42 16 19 O -0.19 -4.36 10.65 -2.45 -0.03 -4.39 16 20 C -0.12 -4.82 5.72 31.67 0.18 -4.63 16 21 C -0.11 -3.33 6.78 31.32 0.21 -3.12 16 22 C -0.11 -3.07 6.78 31.32 0.21 -2.86 16 23 C -0.13 -4.93 4.37 31.68 0.14 -4.79 16 24 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 25 H 0.39 12.64 7.27 -92.70 -0.67 11.97 16 26 H 0.40 11.00 8.49 -92.71 -0.79 10.22 16 27 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.25 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.05 2.11 8.05 -2.39 -0.02 2.09 16 33 H 0.04 1.84 6.98 -2.39 -0.02 1.82 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 2.13 4.44 -2.39 -0.01 2.12 16 39 H 0.07 2.73 8.04 -2.39 -0.02 2.71 16 Total: -1.00 -80.56 314.00 1.89 -78.67 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.65 Total: 33.56 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 4.80 Total: 0.42 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -3.82 Total: -119.87 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.08 Total: -38.04 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.64 Total: 45.26 kcal Total: -80.56 1.89 -78.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188199716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.546 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds