Wall clock time and date at job start Tue Mar 31 2020 00:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99523 * 2 1 4 4 H 1.48507 * 109.46933 * 239.99925 * 3 2 1 5 5 H 1.48494 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46869 * 120.00237 * 3 2 1 7 7 C 1.39937 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99149 * 197.87866 * 7 2 1 9 9 C 1.41434 * 120.00071 * 17.87903 * 7 2 1 10 10 C 1.40787 * 120.17464 * 204.44285 * 9 7 2 11 11 C 1.37711 * 120.04178 * 180.02562 * 10 9 7 12 12 C 1.38380 * 120.40825 * 359.70365 * 11 10 9 13 13 C 1.39880 * 120.35464 * 0.55397 * 12 11 10 14 14 C 1.47892 * 120.02041 * 179.74419 * 13 12 11 15 15 O 1.21553 * 119.99806 * 179.72643 * 14 13 12 16 16 N 1.34773 * 120.00115 * 359.72132 * 14 13 12 17 17 C 1.46504 * 120.00017 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47286 * 180.02562 * 17 16 14 19 19 N 1.46890 * 109.47227 * 180.02562 * 18 17 16 20 20 C 1.46902 * 111.00124 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47378 * 179.97438 * 20 19 18 22 22 O 1.42904 * 109.46713 * 65.00125 * 21 20 19 23 23 C 1.39031 * 119.95234 * 359.47187 * 13 12 11 24 24 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.98106 * 0.02834 * 10 9 7 26 26 H 1.07995 * 119.79507 * 179.97438 * 11 10 9 27 27 H 1.07994 * 119.81605 * 180.27770 * 12 11 10 28 28 H 0.96999 * 120.00139 * 0.02562 * 16 14 13 29 29 H 1.08996 * 109.46563 * 60.00824 * 17 16 14 30 30 H 1.09001 * 109.47119 * 300.00737 * 17 16 14 31 31 H 1.09002 * 109.46879 * 300.00436 * 18 17 16 32 32 H 1.09004 * 109.46689 * 59.99878 * 18 17 16 33 33 H 1.00906 * 110.99887 * 56.04760 * 19 18 17 34 34 H 1.08998 * 109.47206 * 300.00642 * 20 19 18 35 35 H 1.09006 * 109.47010 * 60.00091 * 20 19 18 36 36 H 1.08998 * 109.47538 * 184.99936 * 21 20 19 37 37 H 1.08997 * 109.47290 * 305.00731 * 21 20 19 38 38 H 0.96694 * 114.00085 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.20200 * 180.23272 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2126 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2344 0.2866 9 6 1.3520 -2.4070 -0.3771 10 6 1.8263 -3.6499 0.0836 11 6 1.1859 -4.8119 -0.2852 12 6 0.0710 -4.7678 -1.1038 13 6 -0.4114 -3.5425 -1.5756 14 6 -1.6001 -3.5043 -2.4546 15 8 -2.0220 -2.4390 -2.8603 16 7 -2.2156 -4.6507 -2.8059 17 6 -3.3935 -4.6128 -3.6762 18 6 -3.8949 -6.0379 -3.9181 19 7 -5.0756 -6.0000 -4.7913 20 6 -5.5854 -7.3538 -5.0464 21 6 -6.8125 -7.2736 -5.9568 22 8 -6.4244 -6.7685 -7.2360 23 6 0.2239 -2.3602 -1.2129 24 1 -0.4850 0.8400 -0.0004 25 1 2.6930 -3.6922 0.7266 26 1 1.5534 -5.7632 0.0701 27 1 -0.4265 -5.6846 -1.3834 28 1 -1.8791 -5.5008 -2.4819 29 1 -3.1268 -4.1546 -4.6286 30 1 -4.1794 -4.0276 -3.1988 31 1 -3.1091 -6.6235 -4.3954 32 1 -4.1615 -6.4958 -2.9655 33 1 -4.8705 -5.5222 -5.6561 34 1 -4.8110 -7.9483 -5.5313 35 1 -5.8641 -7.8212 -4.1019 36 1 -7.2434 -8.2679 -6.0743 37 1 -7.5518 -6.6074 -5.5122 38 1 -7.1537 -6.6911 -7.8661 39 1 -0.1474 -1.4117 -1.5718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:48 Heat of formation + Delta-G solvation = -74.863326 kcal Electronic energy + Delta-G solvation = -20403.035353 eV Core-core repulsion = 17116.744783 eV Total energy + Delta-G solvation = -3286.290570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.20450 -37.89858 -37.03945 -36.01439 -34.01948 -33.63270 -30.74890 -29.67230 -29.39602 -26.82618 -25.24893 -22.90753 -22.18265 -21.65388 -20.87315 -19.49020 -17.96302 -17.70531 -16.43978 -16.06595 -15.82310 -15.20496 -15.08916 -14.86666 -14.55840 -14.28831 -13.80555 -13.47885 -13.20734 -13.13482 -12.60712 -12.53054 -12.45172 -11.91287 -11.67483 -11.42658 -11.30350 -11.13198 -11.05624 -10.73359 -10.49049 -10.40036 -10.01986 -9.68585 -9.19617 -9.01245 -8.70841 -8.63637 -7.61840 -7.51063 -6.78808 -4.40254 2.23013 2.83424 3.08619 3.10384 3.17913 3.44751 3.89052 3.91734 3.93515 4.23690 4.65332 4.71391 4.87213 4.94472 5.01796 5.11725 5.39973 5.45559 5.50413 5.61758 5.69592 5.97073 6.03721 6.13505 6.28245 6.67707 6.72864 6.87992 6.99859 7.03164 7.13905 7.22539 7.25251 7.39194 7.71281 7.76985 7.93808 8.10771 8.20464 8.51685 8.81225 8.84724 8.97734 10.15885 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.002970 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.575329 B = 9425.032931 C =10197.830680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.219 4.219 13 C -0.127 4.127 14 C 0.564 3.436 15 O -0.545 6.545 16 N -0.737 5.737 17 C 0.124 3.876 18 C 0.048 3.952 19 N -0.685 5.685 20 C 0.060 3.940 21 C 0.075 3.925 22 O -0.576 6.576 23 C -0.093 4.093 24 H 0.285 0.715 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.398 0.602 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.352 0.648 34 H 0.037 0.963 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.381 0.619 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 -12.239 -8.279 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.239 4.239 13 C -0.130 4.130 14 C 0.355 3.645 15 O -0.423 6.423 16 N -0.392 5.392 17 C -0.001 4.001 18 C -0.081 4.081 19 N -0.317 5.317 20 C -0.070 4.070 21 C -0.003 4.003 22 O -0.382 6.382 23 C -0.113 4.113 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.233 0.767 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.228 0.772 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.351 -11.167 -7.756 17.088 hybrid contribution 0.517 -0.188 -0.590 0.807 sum -9.834 -11.355 -8.347 17.185 Atomic orbital electron populations 1.69781 1.07584 1.29925 1.33372 1.25974 0.94776 1.01566 0.92326 0.86319 0.80106 0.80092 0.79965 1.18712 1.20212 1.18973 1.19557 0.98211 0.91078 1.40036 0.90098 1.17600 0.91199 0.92466 0.89149 1.21094 1.03550 0.92751 1.05821 1.20433 0.96013 0.96725 0.98451 1.20332 1.01300 0.94605 1.07672 1.19468 0.96519 0.95325 1.01709 1.18836 0.83285 0.82776 0.79650 1.90702 1.66254 1.29837 1.55464 1.45844 1.31013 1.09799 1.52518 1.21086 0.88198 0.95839 0.94966 1.22109 0.91276 0.96744 0.98003 1.60354 1.33173 1.17180 1.21032 1.21992 0.96086 0.90512 0.98405 1.22260 0.96769 0.97623 0.83637 1.86452 1.39404 1.88227 1.24120 1.21642 0.96492 0.96485 0.96710 0.90342 0.88623 0.88918 0.89282 0.76674 0.92021 0.90906 0.94570 0.90350 0.82925 0.94446 0.89606 0.93228 0.92471 0.77220 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.96 10.96 55.55 0.61 -20.35 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.94 29.60 -169.99 -5.03 13.91 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.17 9.05 -37.73 -0.34 -12.52 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16 10 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 11 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 12 C -0.22 -4.64 9.55 -38.91 -0.37 -5.01 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 14 C 0.56 12.65 7.77 -12.31 -0.10 12.56 16 15 O -0.54 -14.06 16.33 5.32 0.09 -13.98 16 16 N -0.74 -12.47 5.51 -61.23 -0.34 -12.81 16 17 C 0.12 1.80 5.93 -4.04 -0.02 1.78 16 18 C 0.05 0.53 5.80 -3.83 -0.02 0.51 16 19 N -0.68 -7.18 6.50 -113.78 -0.74 -7.92 16 20 C 0.06 0.50 6.10 -3.82 -0.02 0.48 16 21 C 0.08 0.53 7.39 37.16 0.27 0.80 16 22 O -0.58 -4.59 13.18 -35.23 -0.46 -5.05 16 23 C -0.09 -2.52 8.24 -38.44 -0.32 -2.84 16 24 H 0.29 7.05 8.30 -40.82 -0.34 6.71 16 25 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 26 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 27 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 28 H 0.40 5.74 6.49 -40.82 -0.26 5.48 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.35 3.85 8.29 -39.29 -0.33 3.52 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.38 1.35 9.12 45.56 0.42 1.77 16 39 H 0.13 3.91 5.74 -52.49 -0.30 3.61 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -31.63 333.07 -8.44 -40.07 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -4.59 Total: 13.16 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -3.00 Total: -12.05 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.47 Total: -41.08 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.38 Total: -19.03 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.63 -8.44 -40.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.793 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds