Wall clock time and date at job start Tue Mar 31 2020 00:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99523 * 2 1 4 4 H 1.48507 * 109.46933 * 239.99925 * 3 2 1 5 5 H 1.48494 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46869 * 120.00237 * 3 2 1 7 7 C 1.39937 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99149 * 197.87866 * 7 2 1 9 9 C 1.41434 * 120.00071 * 17.87903 * 7 2 1 10 10 C 1.40787 * 120.17464 * 204.44285 * 9 7 2 11 11 C 1.37711 * 120.04178 * 180.02562 * 10 9 7 12 12 C 1.38380 * 120.40825 * 359.70365 * 11 10 9 13 13 C 1.39880 * 120.35464 * 0.55397 * 12 11 10 14 14 C 1.47892 * 120.02041 * 179.74419 * 13 12 11 15 15 O 1.21553 * 119.99806 * 179.72643 * 14 13 12 16 16 N 1.34773 * 120.00115 * 359.72132 * 14 13 12 17 17 C 1.46504 * 120.00017 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47286 * 180.02562 * 17 16 14 19 19 N 1.46890 * 109.47227 * 180.02562 * 18 17 16 20 20 C 1.46902 * 111.00124 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47378 * 179.97438 * 20 19 18 22 22 O 1.42904 * 109.46713 * 65.00125 * 21 20 19 23 23 C 1.39031 * 119.95234 * 359.47187 * 13 12 11 24 24 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.98106 * 0.02834 * 10 9 7 26 26 H 1.07995 * 119.79507 * 179.97438 * 11 10 9 27 27 H 1.07994 * 119.81605 * 180.27770 * 12 11 10 28 28 H 0.96999 * 120.00139 * 0.02562 * 16 14 13 29 29 H 1.08996 * 109.46563 * 60.00824 * 17 16 14 30 30 H 1.09001 * 109.47119 * 300.00737 * 17 16 14 31 31 H 1.09002 * 109.46879 * 300.00436 * 18 17 16 32 32 H 1.09004 * 109.46689 * 59.99878 * 18 17 16 33 33 H 1.00906 * 110.99887 * 56.04760 * 19 18 17 34 34 H 1.08998 * 109.47206 * 300.00642 * 20 19 18 35 35 H 1.09006 * 109.47010 * 60.00091 * 20 19 18 36 36 H 1.08998 * 109.47538 * 184.99936 * 21 20 19 37 37 H 1.08997 * 109.47290 * 305.00731 * 21 20 19 38 38 H 0.96694 * 114.00085 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.20200 * 180.23272 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2126 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2344 0.2866 9 6 1.3520 -2.4070 -0.3771 10 6 1.8263 -3.6499 0.0836 11 6 1.1859 -4.8119 -0.2852 12 6 0.0710 -4.7678 -1.1038 13 6 -0.4114 -3.5425 -1.5756 14 6 -1.6001 -3.5043 -2.4546 15 8 -2.0220 -2.4390 -2.8603 16 7 -2.2156 -4.6507 -2.8059 17 6 -3.3935 -4.6128 -3.6762 18 6 -3.8949 -6.0379 -3.9181 19 7 -5.0756 -6.0000 -4.7913 20 6 -5.5854 -7.3538 -5.0464 21 6 -6.8125 -7.2736 -5.9568 22 8 -6.4244 -6.7685 -7.2360 23 6 0.2239 -2.3602 -1.2129 24 1 -0.4850 0.8400 -0.0004 25 1 2.6930 -3.6922 0.7266 26 1 1.5534 -5.7632 0.0701 27 1 -0.4265 -5.6846 -1.3834 28 1 -1.8791 -5.5008 -2.4819 29 1 -3.1268 -4.1546 -4.6286 30 1 -4.1794 -4.0276 -3.1988 31 1 -3.1091 -6.6235 -4.3954 32 1 -4.1615 -6.4958 -2.9655 33 1 -4.8705 -5.5222 -5.6561 34 1 -4.8110 -7.9483 -5.5313 35 1 -5.8641 -7.8212 -4.1019 36 1 -7.2434 -8.2679 -6.0743 37 1 -7.5518 -6.6074 -5.5122 38 1 -7.1537 -6.6911 -7.8661 39 1 -0.1474 -1.4117 -1.5718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:47 Heat of formation + Delta-G solvation = -100.594849 kcal Electronic energy + Delta-G solvation = -20404.151155 eV Core-core repulsion = 17116.744783 eV Total energy + Delta-G solvation = -3287.406373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.92060 -38.92960 -38.48180 -36.99422 -35.66694 -35.16542 -32.31763 -31.29967 -30.79832 -27.92203 -27.08186 -24.36895 -23.13577 -22.80076 -22.59462 -21.20215 -19.52421 -18.49505 -17.98517 -17.28743 -17.11176 -16.76429 -16.42900 -16.20017 -15.91743 -15.50830 -15.09708 -15.04016 -14.61021 -14.35309 -14.26830 -14.03003 -13.47649 -13.34905 -12.95596 -12.81296 -12.71843 -12.56518 -12.43562 -12.20180 -12.01487 -11.91177 -11.51268 -11.06567 -10.92971 -10.81378 -10.18837 -9.48679 -9.47576 -9.38629 -8.66633 -6.38211 0.37381 1.01344 1.36088 1.47964 1.50812 2.08706 2.11973 2.19378 2.78484 3.29482 3.47439 3.69844 3.81336 4.01615 4.09495 4.21401 4.38716 4.42483 4.44420 4.55644 4.59981 4.81708 4.86157 4.88584 4.94268 4.98149 5.08768 5.19550 5.31113 5.41106 5.51876 5.86453 5.92106 5.93480 6.05400 6.28504 6.31248 6.50337 6.67804 6.87587 6.91193 6.94743 7.29153 8.30023 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.002970 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.575329 B = 9425.032931 C =10197.830680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.498 4.498 8 H 0.085 0.915 9 C 0.066 3.934 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.197 4.197 13 C -0.138 4.138 14 C 0.559 3.441 15 O -0.590 6.590 16 N -0.711 5.711 17 C 0.125 3.875 18 C 0.062 3.938 19 N -0.694 5.694 20 C 0.056 3.944 21 C 0.076 3.924 22 O -0.598 6.598 23 C -0.133 4.133 24 H 0.287 0.713 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.414 0.586 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.347 0.653 34 H 0.035 0.965 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.398 0.602 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.030 -15.122 -8.353 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.527 4.527 8 H 0.103 0.897 9 C 0.063 3.937 10 C -0.236 4.236 11 C -0.113 4.113 12 C -0.217 4.217 13 C -0.142 4.142 14 C 0.349 3.651 15 O -0.472 6.472 16 N -0.365 5.365 17 C 0.000 4.000 18 C -0.068 4.068 19 N -0.327 5.327 20 C -0.073 4.073 21 C -0.002 4.002 22 O -0.407 6.407 23 C -0.154 4.154 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.158 0.842 27 H 0.156 0.844 28 H 0.252 0.748 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.166 0.834 34 H 0.054 0.946 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.247 0.753 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.439 -14.129 -7.836 19.235 hybrid contribution 0.459 0.467 -0.623 0.904 sum -9.980 -13.662 -8.458 18.915 Atomic orbital electron populations 1.69888 1.09289 1.30696 1.35228 1.26882 0.95413 1.05047 0.91337 0.85233 0.78694 0.75405 0.80308 1.18502 1.19705 1.17510 1.19846 0.98631 0.92219 1.41984 0.89693 1.17959 0.91792 0.94023 0.89889 1.21421 1.03947 0.92742 1.05522 1.20942 0.95297 0.97757 0.97352 1.20868 1.00486 0.95077 1.05238 1.19763 0.96901 0.95639 1.01869 1.18773 0.83251 0.83534 0.79532 1.90678 1.67421 1.31863 1.57192 1.45591 1.30693 1.08774 1.51403 1.21189 0.86654 0.98425 0.93684 1.21967 0.91919 0.93886 0.99012 1.60376 1.32790 1.18677 1.20829 1.22128 0.96523 0.89179 0.99467 1.22288 0.96037 0.98757 0.83133 1.86403 1.41002 1.88437 1.24866 1.21454 0.98401 0.96458 0.99096 0.90297 0.87270 0.84183 0.84371 0.74756 0.92879 0.92476 0.93321 0.89010 0.83445 0.94628 0.88288 0.91035 0.92659 0.75252 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.89 10.96 21.82 0.24 -46.65 16 2 C 0.03 1.49 5.14 85.25 0.44 1.93 16 3 Si 0.98 40.18 29.60 68.60 2.03 42.21 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 7 C -0.50 -27.40 9.05 23.47 0.21 -27.19 16 8 H 0.08 4.39 7.91 -2.91 -0.02 4.36 16 9 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 10 C -0.22 -10.15 9.78 22.77 0.22 -9.93 16 11 C -0.10 -3.76 10.01 22.18 0.22 -3.54 16 12 C -0.20 -7.70 9.55 22.70 0.22 -7.49 16 13 C -0.14 -6.64 5.87 -20.13 -0.12 -6.76 16 14 C 0.56 25.23 7.77 86.80 0.67 25.90 16 15 O -0.59 -31.77 16.33 -3.88 -0.06 -31.84 16 16 N -0.71 -22.78 5.51 -465.92 -2.57 -25.35 16 17 C 0.12 3.49 5.93 86.38 0.51 4.00 16 18 C 0.06 1.20 5.80 86.30 0.50 1.70 16 19 N -0.69 -13.26 6.50 -513.89 -3.34 -16.60 16 20 C 0.06 0.80 6.10 86.30 0.53 1.33 16 21 C 0.08 0.90 7.39 71.98 0.53 1.43 16 22 O -0.60 -8.54 13.18 -148.98 -1.96 -10.50 16 23 C -0.13 -7.55 8.24 23.01 0.19 -7.36 16 24 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 25 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 26 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 27 H 0.14 3.99 6.38 -2.91 -0.02 3.98 16 28 H 0.41 10.38 6.49 -92.71 -0.60 9.78 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.35 7.18 8.29 -89.69 -0.74 6.43 16 34 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.40 2.21 9.12 -74.06 -0.68 1.54 16 39 H 0.10 6.18 5.74 -2.91 -0.02 6.17 16 Total: -1.00 -73.29 333.07 -2.58 -75.88 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.93 Total: 35.33 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 4.01 Total: -22.48 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -5.67 Total: -88.60 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -2.03 Total: -42.34 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -73.29 -2.58 -75.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.720 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds