Wall clock time and date at job start Mon Mar 30 2020 23:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47360 * 2 1 4 4 C 1.34231 * 116.99805 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99827 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47330 * 305.00288 * 6 4 3 8 8 C 1.53003 * 109.47267 * 65.00139 * 6 4 3 9 9 O 1.42903 * 109.47556 * 185.00204 * 6 4 3 10 10 C 1.42896 * 114.00322 * 149.99868 * 9 6 4 11 11 H 1.09003 * 109.47160 * 30.00701 * 10 9 6 12 12 C 1.50697 * 109.47220 * 269.99891 * 10 9 6 13 13 H 1.07998 * 120.00458 * 324.84612 * 12 10 9 14 14 C 1.37878 * 119.99806 * 144.84035 * 12 10 9 15 15 N 1.31515 * 120.00210 * 3.42531 * 14 12 10 16 16 Si 1.86800 * 120.00006 * 183.42692 * 14 12 10 17 17 H 1.48506 * 109.47039 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47620 * 120.00186 * 16 14 12 19 19 H 1.48506 * 109.46887 * 240.00480 * 16 14 12 20 20 C 1.50703 * 109.47138 * 150.00121 * 10 9 6 21 21 C 1.38229 * 120.00269 * 217.25624 * 20 10 9 22 22 C 1.38236 * 120.00285 * 179.97438 * 21 20 10 23 23 C 1.38233 * 119.99588 * 0.02562 * 22 21 20 24 24 C 1.38230 * 120.00161 * 359.97438 * 23 22 21 25 25 C 1.38226 * 120.00308 * 359.97146 * 24 23 22 26 26 H 1.08987 * 109.47173 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46897 * 300.00180 * 1 2 3 28 28 H 1.09003 * 109.46931 * 59.99264 * 1 2 3 29 29 H 1.09002 * 109.47447 * 240.00160 * 2 1 3 30 30 H 1.09001 * 109.47282 * 120.00053 * 2 1 3 31 31 H 1.09003 * 109.47560 * 180.02562 * 8 6 4 32 32 H 1.09000 * 109.47060 * 300.00014 * 8 6 4 33 33 H 1.09000 * 109.46824 * 59.99840 * 8 6 4 34 34 H 0.96996 * 120.00045 * 179.97438 * 15 14 12 35 35 H 1.08002 * 119.99618 * 0.25961 * 21 20 10 36 36 H 1.08003 * 119.99956 * 179.97438 * 22 21 20 37 37 H 1.08002 * 119.99636 * 179.97438 * 23 22 21 38 38 H 1.08003 * 119.99766 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.00057 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9372 0.0012 7 1 3.5153 3.4986 -0.8406 8 6 3.5520 3.6412 1.3086 9 8 5.3432 2.8645 -0.1158 10 6 5.9299 3.9852 -0.7804 11 1 5.3216 4.8721 -0.6030 12 6 5.9995 3.7115 -2.2607 13 1 6.1922 2.7101 -2.6163 14 6 5.8170 4.7395 -3.1612 15 7 5.6493 5.9703 -2.7290 16 14 5.8078 4.3842 -4.9950 17 1 6.0161 2.9310 -5.2187 18 1 4.5017 4.7922 -5.5719 19 1 6.8993 5.1471 -5.6524 20 6 7.3202 4.2148 -0.2462 21 6 7.7939 5.5030 -0.0825 22 6 9.0690 5.7136 0.4081 23 6 9.8706 4.6357 0.7344 24 6 9.3970 3.3475 0.5708 25 6 8.1215 3.1369 0.0813 26 1 -0.3633 -1.0275 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5140 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9683 4.6486 1.3089 32 1 2.4671 3.6968 1.3978 33 1 3.9575 3.0798 2.1504 34 1 5.5213 6.6935 -3.3625 35 1 7.1660 6.3451 -0.3335 36 1 9.4391 6.7202 0.5356 37 1 10.8670 4.8002 1.1173 38 1 10.0235 2.5054 0.8254 39 1 7.7517 2.1304 -0.0470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204596653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:50 Heat of formation + Delta-G solvation = -116.508638 kcal Electronic energy + Delta-G solvation = -21780.053588 eV Core-core repulsion = 18459.664391 eV Total energy + Delta-G solvation = -3320.389197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.09549 -38.46784 -37.03441 -35.92945 -33.17260 -31.92744 -31.10361 -30.03812 -29.80404 -26.63269 -24.80467 -23.28291 -22.47819 -21.61619 -20.39984 -20.11390 -17.40677 -16.72494 -16.47564 -16.25721 -15.87119 -15.38872 -14.60576 -14.28227 -14.11205 -13.68326 -13.43547 -13.30691 -12.81153 -12.64201 -12.49816 -12.30510 -11.98021 -11.89024 -11.76593 -11.66121 -11.47306 -11.09440 -11.06511 -10.78761 -10.38145 -10.34719 -10.18712 -10.10658 -9.77014 -9.44952 -8.71579 -8.59039 -8.01824 -7.66936 -6.24979 -4.32590 2.30862 2.31947 2.67736 2.82502 3.19720 3.28252 3.34756 4.26518 4.64047 4.86455 4.94479 4.98572 5.10196 5.11659 5.29441 5.48977 5.62470 5.68193 5.73403 5.76895 5.79243 5.87564 5.93653 6.01753 6.20279 6.35275 6.46542 6.47745 6.56604 6.73311 6.88138 6.98512 7.06744 7.34538 7.45063 7.64830 7.70706 7.92350 8.04919 8.10147 8.30580 8.88442 9.35629 10.79218 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.006124 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.407125 B = 4570.818198 C = 5854.943225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.361 6.361 4 C 0.465 3.535 5 O -0.492 6.492 6 C 0.111 3.889 7 H 0.102 0.898 8 C -0.165 4.165 9 O -0.370 6.370 10 C 0.231 3.769 11 H 0.062 0.938 12 C -0.528 4.528 13 H 0.066 0.934 14 C 0.070 3.930 15 N -0.883 5.883 16 Si 0.897 3.103 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.028 4.028 21 C -0.106 4.106 22 C -0.132 4.132 23 C -0.150 4.150 24 C -0.134 4.134 25 C -0.107 4.107 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.267 0.733 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 -3.870 6.551 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.279 6.279 4 C 0.306 3.694 5 O -0.378 6.378 6 C 0.051 3.949 7 H 0.120 0.880 8 C -0.222 4.222 9 O -0.290 6.290 10 C 0.176 3.824 11 H 0.079 0.921 12 C -0.565 4.565 13 H 0.084 0.916 14 C -0.134 4.134 15 N -0.520 5.520 16 Si 0.724 3.276 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.029 4.029 21 C -0.124 4.124 22 C -0.150 4.150 23 C -0.168 4.168 24 C -0.152 4.152 25 C -0.126 4.126 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.226 -4.159 6.552 9.356 hybrid contribution 0.087 -0.075 -1.314 1.319 sum -5.139 -4.234 5.238 8.472 Atomic orbital electron populations 1.21786 0.92915 1.02599 1.03471 1.22943 0.95053 0.80952 1.02416 1.86503 1.24974 1.31745 1.84682 1.23986 0.80065 0.93066 0.72250 1.90622 1.60242 1.42950 1.43942 1.21082 0.85839 0.88199 0.99773 0.88029 1.22217 1.01711 1.01662 0.96647 1.87864 1.14555 1.47477 1.79124 1.19008 0.87567 0.85386 0.90422 0.92060 1.21531 1.49379 0.95682 0.89928 0.91554 1.24997 0.93852 0.94906 0.99604 1.69882 1.47762 0.99349 1.35046 0.86443 0.77818 0.78905 0.84446 1.19432 1.20644 1.20682 1.20241 0.97676 0.92402 0.92580 1.21020 0.95771 0.97203 0.98384 1.20965 0.94894 0.97909 1.01223 1.20843 0.99163 0.93123 1.03677 1.20978 0.96224 0.96302 1.01706 1.20983 0.93379 0.99398 0.98800 0.90569 0.91584 0.91463 0.91396 0.91538 0.90662 0.91272 0.92062 0.92369 0.85694 0.87374 0.87652 0.87494 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -5.85 10.21 -39.26 -0.40 -6.25 16 4 C 0.46 9.00 7.29 36.00 0.26 9.26 16 5 O -0.49 -10.93 16.26 -25.47 -0.41 -11.34 16 6 C 0.11 2.20 3.02 -27.88 -0.08 2.11 16 7 H 0.10 2.07 7.79 -51.93 -0.40 1.66 16 8 C -0.16 -2.64 9.50 37.16 0.35 -2.28 16 9 O -0.37 -8.64 8.38 -55.13 -0.46 -9.10 16 10 C 0.23 5.67 2.20 -29.03 -0.06 5.61 16 11 H 0.06 1.55 6.72 -51.93 -0.35 1.21 16 12 C -0.53 -14.19 8.61 -34.44 -0.30 -14.49 16 13 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.88 -23.44 12.82 55.43 0.71 -22.73 16 16 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.03 -0.66 4.97 -104.62 -0.52 -1.18 16 21 C -0.11 -2.31 9.67 -39.59 -0.38 -2.69 16 22 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16 23 C -0.15 -2.70 10.05 -39.59 -0.40 -3.10 16 24 C -0.13 -2.55 10.05 -39.59 -0.40 -2.95 16 25 C -0.11 -2.36 9.35 -39.58 -0.37 -2.73 16 26 H 0.08 0.54 8.14 -51.94 -0.42 0.12 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 30 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 31 H 0.07 1.21 7.97 -51.93 -0.41 0.79 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.13 2.81 8.05 -52.49 -0.42 2.38 16 36 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.12 2.65 7.70 -52.49 -0.40 2.24 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -29.77 340.72 -8.00 -37.77 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.77 Total: 4.30 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.78 Total: -13.58 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.71 Total: -22.73 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.28 Total: -26.69 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.77 -8.00 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204596653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.742 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds