Wall clock time and date at job start Mon Mar 30 2020 23:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47360 * 2 1 4 4 C 1.34231 * 116.99805 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99827 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47330 * 305.00288 * 6 4 3 8 8 C 1.53003 * 109.47267 * 65.00139 * 6 4 3 9 9 O 1.42903 * 109.47556 * 185.00204 * 6 4 3 10 10 C 1.42896 * 114.00322 * 149.99868 * 9 6 4 11 11 H 1.09003 * 109.47160 * 30.00701 * 10 9 6 12 12 C 1.50697 * 109.47220 * 269.99891 * 10 9 6 13 13 H 1.07998 * 120.00458 * 324.84612 * 12 10 9 14 14 C 1.37878 * 119.99806 * 144.84035 * 12 10 9 15 15 N 1.31515 * 120.00210 * 3.42531 * 14 12 10 16 16 Si 1.86800 * 120.00006 * 183.42692 * 14 12 10 17 17 H 1.48506 * 109.47039 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47620 * 120.00186 * 16 14 12 19 19 H 1.48506 * 109.46887 * 240.00480 * 16 14 12 20 20 C 1.50703 * 109.47138 * 150.00121 * 10 9 6 21 21 C 1.38229 * 120.00269 * 217.25624 * 20 10 9 22 22 C 1.38236 * 120.00285 * 179.97438 * 21 20 10 23 23 C 1.38233 * 119.99588 * 0.02562 * 22 21 20 24 24 C 1.38230 * 120.00161 * 359.97438 * 23 22 21 25 25 C 1.38226 * 120.00308 * 359.97146 * 24 23 22 26 26 H 1.08987 * 109.47173 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46897 * 300.00180 * 1 2 3 28 28 H 1.09003 * 109.46931 * 59.99264 * 1 2 3 29 29 H 1.09002 * 109.47447 * 240.00160 * 2 1 3 30 30 H 1.09001 * 109.47282 * 120.00053 * 2 1 3 31 31 H 1.09003 * 109.47560 * 180.02562 * 8 6 4 32 32 H 1.09000 * 109.47060 * 300.00014 * 8 6 4 33 33 H 1.09000 * 109.46824 * 59.99840 * 8 6 4 34 34 H 0.96996 * 120.00045 * 179.97438 * 15 14 12 35 35 H 1.08002 * 119.99618 * 0.25961 * 21 20 10 36 36 H 1.08003 * 119.99956 * 179.97438 * 22 21 20 37 37 H 1.08002 * 119.99636 * 179.97438 * 23 22 21 38 38 H 1.08003 * 119.99766 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.00057 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9372 0.0012 7 1 3.5153 3.4986 -0.8406 8 6 3.5520 3.6412 1.3086 9 8 5.3432 2.8645 -0.1158 10 6 5.9299 3.9852 -0.7804 11 1 5.3216 4.8721 -0.6030 12 6 5.9995 3.7115 -2.2607 13 1 6.1922 2.7101 -2.6163 14 6 5.8170 4.7395 -3.1612 15 7 5.6493 5.9703 -2.7290 16 14 5.8078 4.3842 -4.9950 17 1 6.0161 2.9310 -5.2187 18 1 4.5017 4.7922 -5.5719 19 1 6.8993 5.1471 -5.6524 20 6 7.3202 4.2148 -0.2462 21 6 7.7939 5.5030 -0.0825 22 6 9.0690 5.7136 0.4081 23 6 9.8706 4.6357 0.7344 24 6 9.3970 3.3475 0.5708 25 6 8.1215 3.1369 0.0813 26 1 -0.3633 -1.0275 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5140 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9683 4.6486 1.3089 32 1 2.4671 3.6968 1.3978 33 1 3.9575 3.0798 2.1504 34 1 5.5213 6.6935 -3.3625 35 1 7.1660 6.3451 -0.3335 36 1 9.4391 6.7202 0.5356 37 1 10.8670 4.8002 1.1173 38 1 10.0235 2.5054 0.8254 39 1 7.7517 2.1304 -0.0470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204596653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:49 Heat of formation + Delta-G solvation = -131.446920 kcal Electronic energy + Delta-G solvation = -21780.701361 eV Core-core repulsion = 18459.664391 eV Total energy + Delta-G solvation = -3321.036970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60004 -40.10270 -38.62355 -37.47361 -35.07822 -33.32652 -32.44334 -31.60353 -31.33082 -28.53355 -26.23778 -24.94311 -23.71326 -23.17509 -21.93744 -21.74267 -19.01802 -18.61037 -17.99468 -17.72434 -17.43975 -17.02510 -16.35739 -15.86490 -15.51385 -15.23656 -15.08511 -14.72232 -14.20623 -14.04641 -13.86958 -13.71276 -13.59841 -13.31633 -13.24099 -12.94238 -12.89878 -12.78996 -12.59812 -12.43980 -12.15633 -11.89364 -11.77199 -11.54249 -11.48810 -11.19271 -10.69653 -10.37642 -9.60361 -9.34848 -8.25149 -6.40691 0.72056 0.72833 1.11643 1.33356 1.36425 1.43291 1.48614 2.33441 2.94471 3.16884 3.26696 3.69217 3.98443 4.02363 4.09199 4.16247 4.25392 4.30707 4.33248 4.42129 4.61174 4.72199 4.75131 4.82613 4.88394 4.92968 4.96257 5.10726 5.11079 5.17441 5.37575 5.39337 5.39898 5.59171 5.77902 5.84089 5.98218 6.06108 6.29631 6.38416 6.72139 6.88588 7.30584 8.77430 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.006124 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.407125 B = 4570.818198 C = 5854.943225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.355 6.355 4 C 0.471 3.529 5 O -0.528 6.528 6 C 0.100 3.900 7 H 0.090 0.910 8 C -0.153 4.153 9 O -0.388 6.388 10 C 0.242 3.758 11 H 0.044 0.956 12 C -0.549 4.549 13 H 0.040 0.960 14 C 0.035 3.965 15 N -0.899 5.899 16 Si 0.949 3.051 17 H -0.278 1.278 18 H -0.268 1.268 19 H -0.274 1.274 20 C -0.058 4.058 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.128 4.128 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.271 0.729 35 H 0.109 0.891 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 -3.635 7.253 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.272 6.272 4 C 0.315 3.685 5 O -0.416 6.416 6 C 0.040 3.960 7 H 0.107 0.893 8 C -0.210 4.210 9 O -0.308 6.308 10 C 0.187 3.813 11 H 0.061 0.939 12 C -0.587 4.587 13 H 0.059 0.941 14 C -0.167 4.167 15 N -0.536 5.536 16 Si 0.775 3.225 17 H -0.203 1.203 18 H -0.193 1.193 19 H -0.200 1.200 20 C -0.058 4.058 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.147 4.147 26 H 0.122 0.878 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.159 0.841 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.844 -3.913 7.263 9.567 hybrid contribution -0.069 -0.198 -1.470 1.485 sum -4.913 -4.111 5.792 8.636 Atomic orbital electron populations 1.21817 0.89596 1.04567 1.03904 1.23377 0.97564 0.79082 1.02449 1.86493 1.22805 1.34059 1.83833 1.23851 0.80959 0.92336 0.71401 1.90599 1.61320 1.43834 1.45861 1.21349 0.84266 0.89052 1.01334 0.89270 1.22145 1.03602 1.00836 0.94451 1.87816 1.16637 1.47355 1.79014 1.18754 0.88378 0.84726 0.89489 0.93856 1.21590 1.50539 0.94705 0.91821 0.94144 1.25574 0.93483 0.94748 1.02899 1.69948 1.47846 0.99693 1.36121 0.85642 0.78417 0.78139 0.80349 1.20318 1.19327 1.19991 1.20261 0.97319 0.93657 0.94589 1.21019 0.97299 0.96021 0.99916 1.21340 0.93518 1.00117 0.99528 1.21325 1.00640 0.91964 1.01675 1.21336 0.95030 0.98264 1.00069 1.20962 0.95029 0.98145 1.00537 0.87789 0.90702 0.91451 0.92030 0.91021 0.90999 0.88294 0.91633 0.91981 0.87280 0.84134 0.83211 0.84320 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 10.29 71.98 0.74 -1.59 16 2 C 0.05 1.22 6.19 71.98 0.45 1.66 16 3 O -0.35 -11.44 10.21 -51.42 -0.53 -11.97 16 4 C 0.47 18.78 7.29 71.23 0.52 19.30 16 5 O -0.53 -24.30 16.26 28.37 0.46 -23.84 16 6 C 0.10 4.10 3.02 29.85 0.09 4.19 16 7 H 0.09 3.85 7.79 -2.39 -0.02 3.83 16 8 C -0.15 -4.93 9.50 71.98 0.68 -4.25 16 9 O -0.39 -19.12 8.38 -129.95 -1.09 -20.21 16 10 C 0.24 12.50 2.20 29.10 0.06 12.57 16 11 H 0.04 2.34 6.72 -2.39 -0.02 2.32 16 12 C -0.55 -30.98 8.61 25.60 0.22 -30.76 16 13 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 14 C 0.04 1.91 5.46 84.65 0.46 2.37 16 15 N -0.90 -48.75 12.82 21.45 0.27 -48.48 16 16 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 C -0.06 -2.78 4.97 -19.86 -0.10 -2.88 16 21 C -0.12 -5.49 9.67 22.27 0.22 -5.27 16 22 C -0.13 -4.54 10.05 22.27 0.22 -4.32 16 23 C -0.14 -4.48 10.05 22.27 0.22 -4.26 16 24 C -0.13 -4.65 10.05 22.27 0.22 -4.42 16 25 C -0.13 -5.74 9.35 22.27 0.21 -5.53 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.62 8.13 -2.39 -0.02 1.61 16 30 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 31 H 0.07 2.36 7.97 -2.39 -0.02 2.34 16 32 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 35 H 0.11 5.06 8.05 -2.91 -0.02 5.04 16 36 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 39 H 0.10 4.69 7.70 -2.91 -0.02 4.67 16 Total: -1.00 -66.88 340.72 6.39 -60.49 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 1.02 Total: 21.76 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 4.22 Total: -23.18 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.27 Total: -48.48 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -1.15 Total: -56.02 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.88 6.39 -60.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204596653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.960 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds