Wall clock time and date at job start Mon Mar 30 2020 23:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.46880 * 2 1 4 4 C 1.34231 * 117.00217 * 180.02562 * 3 2 1 5 5 O 1.20834 * 119.99529 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00456 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47360 * 59.99438 * 6 4 3 8 8 C 1.53000 * 109.47179 * 300.00085 * 6 4 3 9 9 O 1.42904 * 109.47312 * 180.02562 * 6 4 3 10 10 C 1.42898 * 113.99728 * 209.99659 * 9 6 4 11 11 H 1.09007 * 109.47359 * 30.00282 * 10 9 6 12 12 C 1.50693 * 109.47391 * 269.99887 * 10 9 6 13 13 H 1.07996 * 120.00141 * 324.87860 * 12 10 9 14 14 C 1.37877 * 120.00145 * 144.87599 * 12 10 9 15 15 N 1.31521 * 120.00066 * 5.14803 * 14 12 10 16 16 Si 1.86804 * 120.00418 * 185.14302 * 14 12 10 17 17 H 1.48507 * 109.46792 * 89.99948 * 16 14 12 18 18 H 1.48494 * 109.47433 * 209.99968 * 16 14 12 19 19 H 1.48501 * 109.46655 * 330.00362 * 16 14 12 20 20 C 1.50706 * 109.47041 * 149.99629 * 10 9 6 21 21 C 1.38243 * 119.99551 * 37.70060 * 20 10 9 22 22 C 1.38227 * 119.99675 * 179.80805 * 21 20 10 23 23 C 1.38235 * 120.00514 * 0.39767 * 22 21 20 24 24 C 1.38236 * 119.99364 * 359.85523 * 23 22 21 25 25 C 1.38232 * 120.00654 * 359.95865 * 24 23 22 26 26 H 1.08994 * 109.47318 * 60.00041 * 1 2 3 27 27 H 1.08999 * 109.46696 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46856 * 299.99432 * 1 2 3 29 29 H 1.09009 * 109.46990 * 240.00540 * 2 1 3 30 30 H 1.08993 * 109.47662 * 120.00371 * 2 1 3 31 31 H 1.09000 * 109.47020 * 59.99409 * 8 6 4 32 32 H 1.08992 * 109.47593 * 179.97438 * 8 6 4 33 33 H 1.09004 * 109.47142 * 300.00126 * 8 6 4 34 34 H 0.96999 * 120.00302 * 180.02562 * 15 14 12 35 35 H 1.07998 * 119.99740 * 359.97438 * 21 20 10 36 36 H 1.08000 * 119.99956 * 180.23018 * 22 21 20 37 37 H 1.07995 * 120.00286 * 179.83228 * 23 22 21 38 38 H 1.08005 * 119.99735 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.00431 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4691 0.8904 8 6 3.4485 3.6852 -1.2485 9 8 5.3477 2.8627 -0.0013 10 6 5.9878 3.9609 0.6516 11 1 5.3421 4.3387 1.4445 12 6 6.2489 5.0572 -0.3488 13 1 6.5068 4.8084 -1.3675 14 6 6.1586 6.3779 0.0366 15 7 5.9446 6.6817 1.2982 16 14 6.3401 7.7360 -1.2332 17 1 5.0070 8.0677 -1.7972 18 1 6.9190 8.9421 -0.5888 19 1 7.2386 7.2776 -2.3231 20 6 7.2945 3.5003 1.2447 21 6 8.0773 2.5853 0.5656 22 6 9.2777 2.1659 1.1077 23 6 9.6914 2.6550 2.3326 24 6 8.9061 3.5660 3.0140 25 6 7.7075 3.9884 2.4702 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.3600 3.7421 -1.2480 32 1 3.8647 4.6925 -1.2480 33 1 3.7840 3.1535 -2.1390 34 1 5.8807 7.6109 1.5692 35 1 7.7522 2.2004 -0.3896 36 1 9.8911 1.4539 0.5755 37 1 10.6280 2.3252 2.7574 38 1 9.2291 3.9478 3.9713 39 1 7.0942 4.7004 3.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204596655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:51 Heat of formation + Delta-G solvation = -115.598818 kcal Electronic energy + Delta-G solvation = -21791.755193 eV Core-core repulsion = 18471.405448 eV Total energy + Delta-G solvation = -3320.349745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.14318 -38.45176 -37.04307 -35.97806 -33.11386 -31.96607 -31.11165 -29.98313 -29.72274 -26.73434 -24.58293 -23.23272 -22.62149 -21.59822 -20.43088 -20.12460 -17.40967 -16.81479 -16.49202 -16.25665 -15.84286 -15.35992 -14.48541 -14.31631 -14.16310 -13.69078 -13.43530 -13.25733 -12.83410 -12.59687 -12.45706 -12.38605 -11.90769 -11.77644 -11.75276 -11.53253 -11.36475 -11.18490 -10.98121 -10.75357 -10.40303 -10.39064 -10.18642 -10.09208 -9.80376 -9.45983 -8.68901 -8.59617 -7.99313 -7.65638 -6.24923 -4.31355 2.33166 2.34507 2.61071 2.78988 3.19869 3.27743 3.32106 4.25477 4.65019 4.87130 4.90834 4.96964 5.09321 5.12037 5.25522 5.62212 5.66159 5.69980 5.70316 5.74008 5.80979 5.89161 5.90760 6.18140 6.35214 6.42705 6.49328 6.57790 6.65769 6.87829 6.91138 7.00506 7.05787 7.36403 7.46373 7.65728 7.70245 7.93696 8.05250 8.08403 8.27129 8.87050 9.35051 10.79738 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.006243 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.107451 B = 4483.958042 C = 6057.898697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.459 3.541 5 O -0.495 6.495 6 C 0.118 3.882 7 H 0.091 0.909 8 C -0.162 4.162 9 O -0.370 6.370 10 C 0.233 3.767 11 H 0.059 0.941 12 C -0.523 4.523 13 H 0.067 0.933 14 C 0.070 3.930 15 N -0.882 5.882 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.271 1.271 20 C -0.031 4.031 21 C -0.105 4.105 22 C -0.134 4.134 23 C -0.150 4.150 24 C -0.132 4.132 25 C -0.105 4.105 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.267 0.733 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 -7.283 -0.019 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.278 6.278 4 C 0.301 3.699 5 O -0.380 6.380 6 C 0.058 3.942 7 H 0.109 0.891 8 C -0.220 4.220 9 O -0.290 6.290 10 C 0.178 3.822 11 H 0.076 0.924 12 C -0.561 4.561 13 H 0.085 0.915 14 C -0.134 4.134 15 N -0.519 5.519 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.031 4.031 21 C -0.123 4.123 22 C -0.152 4.152 23 C -0.168 4.168 24 C -0.150 4.150 25 C -0.123 4.123 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.941 -7.596 0.025 9.643 hybrid contribution 0.201 0.883 -0.497 1.033 sum -5.739 -6.713 -0.473 8.845 Atomic orbital electron populations 1.21788 0.92877 1.02616 1.03498 1.22949 0.95094 0.80960 1.02395 1.86514 1.24946 1.31715 1.84592 1.24260 0.80120 0.93290 0.72268 1.90630 1.60253 1.43024 1.44104 1.21172 0.85129 0.87068 1.00874 0.89136 1.22236 1.00337 1.03049 0.96364 1.87845 1.13457 1.48493 1.79232 1.19046 0.87897 0.82514 0.92719 0.92355 1.21413 1.48155 0.89785 0.96706 0.91464 1.24985 0.94062 0.98833 0.95482 1.69890 1.47758 1.19161 1.15140 0.86504 0.78580 0.81045 0.81486 1.20271 1.21073 1.19587 1.20285 0.97869 0.92733 0.92248 1.20943 0.93872 0.97480 0.99989 1.20972 0.97016 1.00971 0.96286 1.20838 0.99677 1.00025 0.96247 1.20960 0.95603 0.98826 0.99651 1.21019 0.96566 0.99329 0.95420 0.91516 0.90553 0.91502 0.91483 0.91481 0.92178 0.88673 0.92415 0.92333 0.86518 0.87516 0.87668 0.87409 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.36 -5.66 10.12 -39.26 -0.40 -6.06 16 4 C 0.46 8.65 7.33 36.00 0.26 8.91 16 5 O -0.49 -10.67 16.25 -25.48 -0.41 -11.08 16 6 C 0.12 2.32 3.24 -27.89 -0.09 2.23 16 7 H 0.09 1.73 7.37 -51.93 -0.38 1.35 16 8 C -0.16 -2.89 9.25 37.16 0.34 -2.54 16 9 O -0.37 -8.60 8.42 -55.18 -0.46 -9.06 16 10 C 0.23 5.68 2.40 -29.04 -0.07 5.61 16 11 H 0.06 1.50 6.49 -51.93 -0.34 1.16 16 12 C -0.52 -13.43 7.12 -34.44 -0.25 -13.67 16 13 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 14 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 15 N -0.88 -23.08 12.84 55.43 0.71 -22.37 16 16 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C -0.03 -0.73 4.97 -104.62 -0.52 -1.25 16 21 C -0.10 -2.32 9.36 -39.58 -0.37 -2.69 16 22 C -0.13 -2.60 10.05 -39.59 -0.40 -3.00 16 23 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 24 C -0.13 -2.57 10.05 -39.58 -0.40 -2.97 16 25 C -0.11 -2.34 9.67 -39.59 -0.38 -2.72 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.82 8.13 -51.92 -0.42 0.40 16 30 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 31 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.09 1.87 6.82 -51.93 -0.35 1.51 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 35 H 0.12 2.61 7.71 -52.49 -0.40 2.20 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 39 H 0.12 2.84 8.05 -52.49 -0.42 2.42 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -28.92 337.58 -7.92 -36.84 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.67 Total: 5.08 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.75 Total: -13.52 kcal Atomic # 7 Polarization: -23.08 SS G_CDS: 0.71 Total: -22.37 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.28 Total: -26.21 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.92 -7.92 -36.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204596655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.763 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds