Wall clock time and date at job start Mon Mar 30 2020 23:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.46880 * 2 1 4 4 C 1.34231 * 117.00217 * 180.02562 * 3 2 1 5 5 O 1.20834 * 119.99529 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00456 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47360 * 59.99438 * 6 4 3 8 8 C 1.53000 * 109.47179 * 300.00085 * 6 4 3 9 9 O 1.42904 * 109.47312 * 180.02562 * 6 4 3 10 10 C 1.42898 * 113.99728 * 209.99659 * 9 6 4 11 11 H 1.09007 * 109.47359 * 30.00282 * 10 9 6 12 12 C 1.50693 * 109.47391 * 269.99887 * 10 9 6 13 13 H 1.07996 * 120.00141 * 324.87860 * 12 10 9 14 14 C 1.37877 * 120.00145 * 144.87599 * 12 10 9 15 15 N 1.31521 * 120.00066 * 5.14803 * 14 12 10 16 16 Si 1.86804 * 120.00418 * 185.14302 * 14 12 10 17 17 H 1.48507 * 109.46792 * 89.99948 * 16 14 12 18 18 H 1.48494 * 109.47433 * 209.99968 * 16 14 12 19 19 H 1.48501 * 109.46655 * 330.00362 * 16 14 12 20 20 C 1.50706 * 109.47041 * 149.99629 * 10 9 6 21 21 C 1.38243 * 119.99551 * 37.70060 * 20 10 9 22 22 C 1.38227 * 119.99675 * 179.80805 * 21 20 10 23 23 C 1.38235 * 120.00514 * 0.39767 * 22 21 20 24 24 C 1.38236 * 119.99364 * 359.85523 * 23 22 21 25 25 C 1.38232 * 120.00654 * 359.95865 * 24 23 22 26 26 H 1.08994 * 109.47318 * 60.00041 * 1 2 3 27 27 H 1.08999 * 109.46696 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46856 * 299.99432 * 1 2 3 29 29 H 1.09009 * 109.46990 * 240.00540 * 2 1 3 30 30 H 1.08993 * 109.47662 * 120.00371 * 2 1 3 31 31 H 1.09000 * 109.47020 * 59.99409 * 8 6 4 32 32 H 1.08992 * 109.47593 * 179.97438 * 8 6 4 33 33 H 1.09004 * 109.47142 * 300.00126 * 8 6 4 34 34 H 0.96999 * 120.00302 * 180.02562 * 15 14 12 35 35 H 1.07998 * 119.99740 * 359.97438 * 21 20 10 36 36 H 1.08000 * 119.99956 * 180.23018 * 22 21 20 37 37 H 1.07995 * 120.00286 * 179.83228 * 23 22 21 38 38 H 1.08005 * 119.99735 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.00431 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4691 0.8904 8 6 3.4485 3.6852 -1.2485 9 8 5.3477 2.8627 -0.0013 10 6 5.9878 3.9609 0.6516 11 1 5.3421 4.3387 1.4445 12 6 6.2489 5.0572 -0.3488 13 1 6.5068 4.8084 -1.3675 14 6 6.1586 6.3779 0.0366 15 7 5.9446 6.6817 1.2982 16 14 6.3401 7.7360 -1.2332 17 1 5.0070 8.0677 -1.7972 18 1 6.9190 8.9421 -0.5888 19 1 7.2386 7.2776 -2.3231 20 6 7.2945 3.5003 1.2447 21 6 8.0773 2.5853 0.5656 22 6 9.2777 2.1659 1.1077 23 6 9.6914 2.6550 2.3326 24 6 8.9061 3.5660 3.0140 25 6 7.7075 3.9884 2.4702 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.3600 3.7421 -1.2480 32 1 3.8647 4.6925 -1.2480 33 1 3.7840 3.1535 -2.1390 34 1 5.8807 7.6109 1.5692 35 1 7.7522 2.2004 -0.3896 36 1 9.8911 1.4539 0.5755 37 1 10.6280 2.3252 2.7574 38 1 9.2291 3.9478 3.9713 39 1 7.0942 4.7004 3.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204596655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:51 Heat of formation + Delta-G solvation = -129.683023 kcal Electronic energy + Delta-G solvation = -21792.365930 eV Core-core repulsion = 18471.405448 eV Total energy + Delta-G solvation = -3320.960482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61226 -40.10016 -38.63055 -37.48546 -34.98458 -33.33952 -32.43946 -31.58297 -31.28004 -28.59759 -25.99823 -24.98709 -23.78600 -23.17402 -21.93980 -21.76046 -18.99633 -18.62940 -17.97301 -17.70512 -17.40147 -16.99588 -16.23836 -15.85985 -15.66566 -15.19975 -14.91340 -14.79462 -14.18644 -14.05333 -13.97698 -13.61895 -13.49008 -13.29061 -13.14323 -12.93887 -12.87016 -12.73484 -12.52721 -12.35893 -12.12236 -11.87979 -11.81297 -11.53728 -11.47478 -11.20187 -10.62855 -10.36265 -9.60688 -9.34418 -8.19114 -6.32273 0.71809 0.72740 1.09103 1.39495 1.42027 1.44562 1.53326 2.38923 2.99205 3.18754 3.27795 3.70087 3.99405 4.07900 4.09248 4.15639 4.24758 4.29468 4.33999 4.40997 4.61308 4.78314 4.81170 4.83081 4.92308 4.93668 4.96938 5.09378 5.12022 5.35449 5.36676 5.38947 5.42735 5.65878 5.77014 5.83374 5.98836 6.09010 6.32393 6.38382 6.71533 6.91876 7.36813 8.84484 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.006243 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.107451 B = 4483.958042 C = 6057.898697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.353 6.353 4 C 0.469 3.531 5 O -0.527 6.527 6 C 0.106 3.894 7 H 0.091 0.909 8 C -0.152 4.152 9 O -0.387 6.387 10 C 0.243 3.757 11 H 0.034 0.966 12 C -0.532 4.532 13 H 0.052 0.948 14 C 0.033 3.967 15 N -0.904 5.904 16 Si 0.951 3.049 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.275 1.275 20 C -0.062 4.062 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.140 4.140 24 C -0.129 4.129 25 C -0.126 4.126 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.268 0.732 35 H 0.103 0.897 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 -7.927 0.016 9.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.271 6.271 4 C 0.313 3.687 5 O -0.415 6.415 6 C 0.046 3.954 7 H 0.109 0.891 8 C -0.209 4.209 9 O -0.307 6.307 10 C 0.187 3.813 11 H 0.052 0.948 12 C -0.570 4.570 13 H 0.070 0.930 14 C -0.168 4.168 15 N -0.542 5.542 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.200 1.200 20 C -0.063 4.063 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.147 4.147 25 C -0.145 4.145 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.719 -8.243 0.057 10.032 hybrid contribution 0.082 0.968 -0.463 1.076 sum -5.637 -7.275 -0.406 9.212 Atomic orbital electron populations 1.21822 0.89684 1.04559 1.03886 1.23383 0.97503 0.79029 1.02532 1.86500 1.22731 1.34091 1.83749 1.23917 0.81025 0.92267 0.71517 1.90610 1.61289 1.43766 1.45871 1.21387 0.83737 0.88385 1.01872 0.89131 1.22128 1.02112 1.01343 0.95324 1.87799 1.15477 1.48215 1.79238 1.18812 0.88179 0.82576 0.91714 0.94787 1.21442 1.48506 0.90735 0.96270 0.92960 1.25587 0.93813 1.00436 0.96999 1.69986 1.48434 1.19482 1.16318 0.85657 0.78838 0.78540 0.79297 1.19072 1.20850 1.19973 1.20372 0.97994 0.94427 0.93506 1.20967 0.95419 0.98135 0.99886 1.21351 0.95912 1.00787 0.96780 1.21320 1.00694 0.98393 0.95322 1.21330 0.94262 0.98366 1.00742 1.21023 0.98091 0.99943 0.95395 0.91009 0.87792 0.91214 0.91304 0.91557 0.89080 0.90749 0.92338 0.92246 0.87873 0.84254 0.83262 0.84287 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.29 71.98 0.74 -1.45 16 2 C 0.05 1.15 6.19 71.98 0.45 1.60 16 3 O -0.35 -10.91 10.12 -51.42 -0.52 -11.43 16 4 C 0.47 17.97 7.33 71.23 0.52 18.49 16 5 O -0.53 -23.23 16.25 28.37 0.46 -22.77 16 6 C 0.11 4.31 3.24 29.85 0.10 4.41 16 7 H 0.09 3.65 7.37 -2.39 -0.02 3.63 16 8 C -0.15 -5.46 9.25 71.98 0.67 -4.80 16 9 O -0.39 -18.86 8.42 -129.90 -1.09 -19.95 16 10 C 0.24 12.43 2.40 29.10 0.07 12.50 16 11 H 0.03 1.87 6.49 -2.38 -0.02 1.85 16 12 C -0.53 -28.38 7.12 25.60 0.18 -28.20 16 13 H 0.05 2.88 7.82 -2.91 -0.02 2.85 16 14 C 0.03 1.74 5.45 84.65 0.46 2.20 16 15 N -0.90 -48.62 12.84 21.45 0.28 -48.34 16 16 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C -0.06 -3.05 4.97 -19.86 -0.10 -3.15 16 21 C -0.13 -5.66 9.36 22.27 0.21 -5.46 16 22 C -0.13 -4.79 10.05 22.27 0.22 -4.57 16 23 C -0.14 -4.67 10.05 22.27 0.22 -4.44 16 24 C -0.13 -4.78 10.05 22.27 0.22 -4.55 16 25 C -0.13 -5.73 9.67 22.27 0.22 -5.51 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.62 8.13 -2.38 -0.02 1.60 16 30 H 0.07 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.09 2.65 8.11 -2.39 -0.02 2.63 16 32 H 0.07 3.00 6.82 -2.39 -0.02 2.98 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.10 4.80 7.71 -2.91 -0.02 4.78 16 36 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.11 5.12 8.05 -2.91 -0.02 5.10 16 Total: -1.00 -64.29 337.58 6.35 -57.94 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 1.03 Total: 23.74 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 4.18 Total: -22.93 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.28 Total: -48.34 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -1.15 Total: -54.15 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -64.29 6.35 -57.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204596655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.744 kcal (2) G-P(sol) polarization free energy of solvation -64.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds