Wall clock time and date at job start Mon Mar 30 2020 23:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.46885 * 2 1 4 4 C 1.34232 * 117.00232 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99475 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00305 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.46924 * 304.99310 * 6 4 3 8 8 C 1.52997 * 109.47078 * 65.00058 * 6 4 3 9 9 O 1.42905 * 109.46972 * 185.00113 * 6 4 3 10 10 C 1.42890 * 113.99966 * 150.00185 * 9 6 4 11 11 H 1.08999 * 109.47437 * 329.99588 * 10 9 6 12 12 C 1.50703 * 109.47514 * 89.99831 * 10 9 6 13 13 H 1.08001 * 120.00020 * 240.00306 * 12 10 9 14 14 C 1.37872 * 119.99989 * 59.99722 * 12 10 9 15 15 N 1.31519 * 119.99939 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00061 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47085 * 90.00203 * 16 14 12 18 18 H 1.48499 * 109.47193 * 209.99868 * 16 14 12 19 19 H 1.48494 * 109.47379 * 330.00003 * 16 14 12 20 20 C 1.50709 * 109.47096 * 209.99936 * 10 9 6 21 21 C 1.38234 * 119.99662 * 324.72162 * 20 10 9 22 22 C 1.38232 * 119.99706 * 179.78578 * 21 20 10 23 23 C 1.38240 * 120.00067 * 0.44944 * 22 21 20 24 24 C 1.38233 * 119.99967 * 359.80497 * 23 22 21 25 25 C 1.38234 * 119.99757 * 145.00004 * 20 10 9 26 26 H 1.09002 * 109.47440 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47588 * 300.00295 * 1 2 3 28 28 H 1.09004 * 109.47074 * 60.00132 * 1 2 3 29 29 H 1.08995 * 109.47220 * 240.00178 * 2 1 3 30 30 H 1.08996 * 109.47190 * 120.00134 * 2 1 3 31 31 H 1.09002 * 109.47153 * 299.99793 * 8 6 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 8 6 4 33 33 H 1.09004 * 109.47261 * 59.99965 * 8 6 4 34 34 H 0.97004 * 120.00108 * 179.97438 * 15 14 12 35 35 H 1.08001 * 119.99829 * 0.02562 * 21 20 10 36 36 H 1.08001 * 119.99780 * 180.27605 * 22 21 20 37 37 H 1.07992 * 119.99919 * 179.83010 * 23 22 21 38 38 H 1.07998 * 120.00277 * 180.02562 * 24 23 22 39 39 H 1.07992 * 120.00496 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0806 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.5152 3.4987 -0.8407 8 6 3.5517 3.6414 1.3086 9 8 5.3430 2.8647 -0.1158 10 6 5.9296 3.9855 -0.7803 11 1 5.2224 4.3894 -1.5048 12 6 6.2725 5.0473 0.2327 13 1 5.8269 6.0282 0.1586 14 6 7.1550 4.7663 1.2540 15 7 7.6980 3.5718 1.3439 16 14 7.5795 6.0821 2.5100 17 1 6.6269 6.0071 3.6467 18 1 8.9617 5.8642 3.0074 19 1 7.4875 7.4211 1.8746 20 6 7.1833 3.5473 -1.4928 21 6 7.9911 2.5743 -0.9347 22 6 9.1387 2.1692 -1.5903 23 6 9.4834 2.7438 -2.7995 24 6 8.6782 3.7206 -3.3550 25 6 7.5283 4.1226 -2.7015 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.4668 3.6969 1.3977 32 1 3.9687 4.6485 1.3092 33 1 3.9572 3.0801 2.1504 34 1 8.3192 3.3742 2.0622 35 1 7.7236 2.1278 0.0116 36 1 9.7675 1.4058 -1.1565 37 1 10.3813 2.4293 -3.3103 38 1 8.9472 4.1692 -4.2998 39 1 6.8993 4.8856 -3.1355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204596663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:54 Heat of formation + Delta-G solvation = -101.405582 kcal Electronic energy + Delta-G solvation = -22116.099340 eV Core-core repulsion = 18796.365061 eV Total energy + Delta-G solvation = -3319.734280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02727 -38.28438 -36.84796 -35.84431 -33.04826 -31.81378 -30.88131 -29.86255 -29.37829 -26.82906 -24.51293 -23.04956 -22.52027 -21.36190 -20.27083 -20.13535 -17.34057 -16.82280 -16.37512 -16.06591 -15.58235 -15.04651 -14.76364 -14.12982 -13.96477 -13.53472 -13.32229 -13.10645 -12.78522 -12.51604 -12.28216 -12.20157 -11.81611 -11.67456 -11.55388 -11.50608 -11.36933 -10.97051 -10.80861 -10.75309 -10.37780 -10.31323 -10.11042 -9.84120 -9.60184 -9.28002 -8.74763 -8.25431 -7.72099 -7.41757 -5.96267 -4.30819 2.50272 2.67376 2.73689 2.89098 3.23334 3.31227 3.32793 4.30884 4.82218 4.95426 5.00644 5.08520 5.19005 5.26281 5.31430 5.66222 5.72694 5.76131 5.81738 5.85321 5.93703 5.98405 6.06492 6.28419 6.37631 6.49222 6.58158 6.75946 6.80074 6.91903 6.99738 7.14508 7.33045 7.53625 7.63047 7.85372 8.01625 8.05996 8.26241 8.35684 8.48132 8.86513 9.43614 10.87293 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.006319 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.757144 B = 4430.056611 C = 5674.444009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.456 3.544 5 O -0.489 6.489 6 C 0.113 3.887 7 H 0.079 0.921 8 C -0.157 4.157 9 O -0.339 6.339 10 C 0.244 3.756 11 H 0.021 0.979 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.086 3.914 15 N -0.842 5.842 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.043 4.043 21 C -0.040 4.040 22 C -0.154 4.154 23 C -0.145 4.145 24 C -0.151 4.151 25 C -0.129 4.129 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.263 0.737 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 -3.064 -3.028 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.282 6.282 4 C 0.298 3.702 5 O -0.374 6.374 6 C 0.052 3.948 7 H 0.096 0.904 8 C -0.215 4.215 9 O -0.258 6.258 10 C 0.188 3.812 11 H 0.039 0.961 12 C -0.580 4.580 13 H 0.082 0.918 14 C -0.121 4.121 15 N -0.476 5.476 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.044 4.044 21 C -0.059 4.059 22 C -0.172 4.172 23 C -0.163 4.163 24 C -0.169 4.169 25 C -0.147 4.147 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.182 0.818 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.234 -3.651 -2.836 9.444 hybrid contribution 0.448 0.806 0.630 1.117 sum -7.786 -2.846 -2.205 8.578 Atomic orbital electron populations 1.21784 0.93000 1.02557 1.03378 1.22920 0.94968 0.81153 1.02382 1.86510 1.25267 1.31590 1.84804 1.24338 0.79940 0.93493 0.72437 1.90639 1.60156 1.42962 1.43625 1.21166 0.86853 0.87086 0.99690 0.90385 1.22181 0.99778 1.03109 0.96409 1.88198 1.12528 1.45777 1.79312 1.18778 0.88170 0.83971 0.90242 0.96064 1.21369 1.27765 0.97965 1.10938 0.91848 1.24986 0.94496 0.95151 0.97433 1.69843 1.27946 1.19586 1.30252 0.86656 0.77918 0.82125 0.81694 1.20386 1.21043 1.19820 1.19940 0.98220 0.94413 0.91828 1.21888 0.91447 0.94340 0.98238 1.21162 0.99080 1.01197 0.95810 1.20821 0.99421 0.98985 0.97112 1.20686 0.96498 0.99888 0.99875 1.20768 0.97641 1.00532 0.95781 0.90614 0.91566 0.91605 0.91551 0.91518 0.92848 0.89165 0.92158 0.92632 0.81759 0.88044 0.88306 0.88029 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.16 0.38 -1.00 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -5.89 10.21 -39.26 -0.40 -6.29 16 4 C 0.46 8.96 7.29 36.01 0.26 9.22 16 5 O -0.49 -11.17 16.26 -25.46 -0.41 -11.59 16 6 C 0.11 2.25 3.24 -27.88 -0.09 2.16 16 7 H 0.08 1.40 7.37 -51.93 -0.38 1.02 16 8 C -0.16 -2.90 9.29 37.16 0.35 -2.55 16 9 O -0.34 -8.23 7.75 -55.13 -0.43 -8.66 16 10 C 0.24 5.86 2.59 -29.03 -0.08 5.78 16 11 H 0.02 0.48 7.28 -51.93 -0.38 0.10 16 12 C -0.54 -13.72 7.38 -34.44 -0.25 -13.98 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.09 2.21 5.24 -17.82 -0.09 2.12 16 15 N -0.84 -22.35 8.50 55.43 0.47 -21.88 16 16 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.04 -1.05 4.80 -104.62 -0.50 -1.55 16 21 C -0.04 -0.99 7.46 -39.58 -0.30 -1.29 16 22 C -0.15 -3.36 10.05 -39.58 -0.40 -3.76 16 23 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 24 C -0.15 -3.00 10.05 -39.58 -0.40 -3.39 16 25 C -0.13 -2.79 9.68 -39.58 -0.38 -3.17 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 30 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.75 6.82 -51.93 -0.35 1.40 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.17 4.43 5.50 -52.49 -0.29 4.14 16 36 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 37 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -29.26 329.47 -8.09 -37.35 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.60 Total: 4.65 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.67 Total: -13.69 kcal Atomic # 7 Polarization: -22.35 SS G_CDS: 0.47 Total: -21.88 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -1.24 Total: -26.54 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.26 -8.09 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204596663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.056 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds